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GLOBAL BIODIVERSITY INFORMATION FACILITY WWW.GBIF.ORG Agenda Building the Biodiversity Informatics Commons Meeting with Elsevier 11 May 2010, Amsterdam
Agenda ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
GLOBAL BIODIVERSITY INFORMATION FACILITY Dr Vishwas Chavan Senior Programme Officer for DIGIT [email_address] WWW.GBIF.ORG GBIF & its achievements Building the Biodiversity Informatics Commons Meeting with Elsevier 11 May 2010, Amsterdam
GBIF: an intergovernmental initiative to share biodiversity information Currently 5 4  countries; 4 4  International Organisations…
Growth in GBIF Participation NB: Drop in Associate Participants in 2007 is attributable to delays in signing the new MOU 2007-2011 Last updated: 2010-02-12 39 51 63 72 78 81 79 88 97 98
GBIF’s Mandate ” To  facilitate free and open access to biodiversity data  worldwide, via the Internet, to underpin scientific research, conservation and sustainable development.” GBIF is govt-initiated, and govt. funded,  in response to government agency needs in biodiversity information access and management; GBIF is in service to science, as a global ‘public good’
Data shared online via GBIF  (> 200  m biodiversity records mapped to a 1 X 1 degree grid) Data Publishers: 312 Data Resources: 9900
GBIF facilitates access/exchange of data ,[object Object]
GBIF Data portal and data access/sharing/ repatriation
GBIF, Global Information Infrastructure for Biodiversity ,[object Object],[object Object],[object Object],[object Object]
Global Biodiversity Research Infrastructure
At the core, a Discovery System Consumers Data Publishers Searching Retrieving Discovering Discovery System Registering Service Publishers Others…
That links to resources… Who? Institutions, Collections … What? Where? When? How Data, Services, GUID/LSID… Location, Access points… Temporal Scope… Formats, protocols, qualities A distributed service ………… .. which resolves to information resources … ./
Global Biodiversity Resources Discovery System (GBRDS) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Key Components: the IPT IPT The Integrated Publishing Toolkit is a state-of-the-art tool to simplify the  mobilization of biodiversity information resources such as Names, Metadata and primary biodiversity data Data Publisher Registration (GBRDS) + Publishing of Names, Metadata, Primary biodiversity data etc…
Simple process! The Integrated Publishing Toolkit (IPT) is designed to simplify the mapping, indexing and harvesting of Names, Metadata and Primary Biodiversity Data!
In summary…GBIF’s Informatics Improved access to Names, Metadata  and Primary Biodiversity  Data Distributed GBIF  informatics architecture Faster and easier  publishing of data
Primary biodiversity data and information  effectively available Data and information that  have been produced  but  are not easy to find, access, and use  (i.e not effectively available!) -  a gigantic task of mobilising billions of data is still needed, as well as integrating new data.  Biological collections Scientific publications Observations Reports Gray literature Data Bases Geography
[object Object],[object Object],[object Object],[object Object],[object Object],Improving mobilisation and Cultural Changes
The Science-Policy Interface Management, conservation and sustainable use of biodiversity Policy development and decision making (at local, national, regional, and global levels) Scientific monitoring of status and trends of biodiversity GBIF-published data and analyses
GLOBAL BIODIVERSITY INFORMATION FACILITY Dr Vishwas Chavan Senior Programme Officer for DIGIT [email_address] WWW.GBIF.ORG Data Publishing Framework Planning & Implementation at the National Level Building the Biodiversity Informatics Commons Meeting with Elsevier 11 May 2010, Amsterdam
Primary Data and Scholarly Publications ,[object Object],Chavan, August 2009 ,[object Object],[object Object]
[object Object],[object Object],[object Object],Why should I publish data? What is there for me?
Data Publishing Framework ,[object Object],[object Object],[object Object]
Chavan and Ingwersen (2009) ,  BMC Bioinformatics, 10 (Suppl. 14): S2
DPF: Core Technical Components Chavan and Ingwersen (2009) , BMC Bioinformatics, 10 (Suppl. 14): S2
Occurrence Data KML file Data Publication together with scholarly publication: ZooKeys experience Penev, et.al. (2009). ZooKeys, 11: 1-8.
Persistent Identifiers Journal  System Submission Acceptance Revision Peer Review Publication DoI Distributed Metadata  Catalogues Metadata  Authors auto conversion to manuscript GBIF Metadata  Repository Current Biology PhytoKeys Indian J. Mar. Sci. Registry GBRDS
Data Citation Mechanism & Service ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Data Usage Index (DUI): Why? ,[object Object],Chavan, June 2009 ,[object Object],[object Object],[object Object],[object Object],[object Object]
DPF: Challenges Chavan and Ingwersen (2009) , BMC Bioinformatics, 10 (Suppl. 14): S2  Policy & Political Uptake Cultural &  Social Acceptance  ,[object Object],[object Object],[object Object],[object Object]
Impact of Data Publishing Framework Funding Agencies Project Data Creation,  Collection Analysis, Interpretation Scholarly Publishing Data  Management, & Archival Data Publishing Increased  Data Usage Knowledge  Dissemination support results in  Inspires another results in  requires  provide feedback on gaps  and strategies for  leads to  Metadata  facilitate  facilitate  results in  Improves data quality  and fitness facilitate  encourages  Existing cycle Complementary Expected cycle Impact Factor Data Usage Index Data Discovery Incentivisation  through  Data Paper  leads to  leads to  leads to  results in  Source: BMC Bioinformatics 2009,  10 (Suppl 14) : S2, doi:10.1186/1471-2105-10-S14-S2
GBIF & Elsevier: Collaboration ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Email:  [email_address] Data Publishing together with  Scholarly Publishing!
© Vishwas Chavan, 2009 Metadata  Catalogues HIT HIT Data Publishers IPT Other Publishing  Tools Processed  Indexes Integration Services Applications Portals Open  Journal  System Scholarly  Publishing Other  Review  Systems Submission Acceptance Revision Peer Review Publication International  Journal of  Biodiversity Data auto conversion to manuscript Registry GBRDS DoI

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Elsevier1 vc

  • 1. GLOBAL BIODIVERSITY INFORMATION FACILITY WWW.GBIF.ORG Agenda Building the Biodiversity Informatics Commons Meeting with Elsevier 11 May 2010, Amsterdam
  • 2.
  • 3. GLOBAL BIODIVERSITY INFORMATION FACILITY Dr Vishwas Chavan Senior Programme Officer for DIGIT [email_address] WWW.GBIF.ORG GBIF & its achievements Building the Biodiversity Informatics Commons Meeting with Elsevier 11 May 2010, Amsterdam
  • 4. GBIF: an intergovernmental initiative to share biodiversity information Currently 5 4 countries; 4 4 International Organisations…
  • 5. Growth in GBIF Participation NB: Drop in Associate Participants in 2007 is attributable to delays in signing the new MOU 2007-2011 Last updated: 2010-02-12 39 51 63 72 78 81 79 88 97 98
  • 6. GBIF’s Mandate ” To facilitate free and open access to biodiversity data worldwide, via the Internet, to underpin scientific research, conservation and sustainable development.” GBIF is govt-initiated, and govt. funded, in response to government agency needs in biodiversity information access and management; GBIF is in service to science, as a global ‘public good’
  • 7. Data shared online via GBIF (> 200 m biodiversity records mapped to a 1 X 1 degree grid) Data Publishers: 312 Data Resources: 9900
  • 8.
  • 9. GBIF Data portal and data access/sharing/ repatriation
  • 10.
  • 12. At the core, a Discovery System Consumers Data Publishers Searching Retrieving Discovering Discovery System Registering Service Publishers Others…
  • 13. That links to resources… Who? Institutions, Collections … What? Where? When? How Data, Services, GUID/LSID… Location, Access points… Temporal Scope… Formats, protocols, qualities A distributed service ………… .. which resolves to information resources … ./
  • 14.
  • 15. Key Components: the IPT IPT The Integrated Publishing Toolkit is a state-of-the-art tool to simplify the mobilization of biodiversity information resources such as Names, Metadata and primary biodiversity data Data Publisher Registration (GBRDS) + Publishing of Names, Metadata, Primary biodiversity data etc…
  • 16. Simple process! The Integrated Publishing Toolkit (IPT) is designed to simplify the mapping, indexing and harvesting of Names, Metadata and Primary Biodiversity Data!
  • 17. In summary…GBIF’s Informatics Improved access to Names, Metadata and Primary Biodiversity Data Distributed GBIF informatics architecture Faster and easier publishing of data
  • 18. Primary biodiversity data and information effectively available Data and information that have been produced but are not easy to find, access, and use (i.e not effectively available!) - a gigantic task of mobilising billions of data is still needed, as well as integrating new data. Biological collections Scientific publications Observations Reports Gray literature Data Bases Geography
  • 19.
  • 20. The Science-Policy Interface Management, conservation and sustainable use of biodiversity Policy development and decision making (at local, national, regional, and global levels) Scientific monitoring of status and trends of biodiversity GBIF-published data and analyses
  • 21. GLOBAL BIODIVERSITY INFORMATION FACILITY Dr Vishwas Chavan Senior Programme Officer for DIGIT [email_address] WWW.GBIF.ORG Data Publishing Framework Planning & Implementation at the National Level Building the Biodiversity Informatics Commons Meeting with Elsevier 11 May 2010, Amsterdam
  • 22.
  • 23.
  • 24.
  • 25. Chavan and Ingwersen (2009) , BMC Bioinformatics, 10 (Suppl. 14): S2
  • 26. DPF: Core Technical Components Chavan and Ingwersen (2009) , BMC Bioinformatics, 10 (Suppl. 14): S2
  • 27. Occurrence Data KML file Data Publication together with scholarly publication: ZooKeys experience Penev, et.al. (2009). ZooKeys, 11: 1-8.
  • 28. Persistent Identifiers Journal System Submission Acceptance Revision Peer Review Publication DoI Distributed Metadata Catalogues Metadata Authors auto conversion to manuscript GBIF Metadata Repository Current Biology PhytoKeys Indian J. Mar. Sci. Registry GBRDS
  • 29.
  • 30.
  • 31.
  • 32. Impact of Data Publishing Framework Funding Agencies Project Data Creation, Collection Analysis, Interpretation Scholarly Publishing Data Management, & Archival Data Publishing Increased Data Usage Knowledge Dissemination support results in Inspires another results in requires provide feedback on gaps and strategies for leads to Metadata facilitate facilitate results in Improves data quality and fitness facilitate encourages Existing cycle Complementary Expected cycle Impact Factor Data Usage Index Data Discovery Incentivisation through Data Paper leads to leads to leads to results in Source: BMC Bioinformatics 2009, 10 (Suppl 14) : S2, doi:10.1186/1471-2105-10-S14-S2
  • 33.
  • 34. Email: [email_address] Data Publishing together with Scholarly Publishing!
  • 35. © Vishwas Chavan, 2009 Metadata Catalogues HIT HIT Data Publishers IPT Other Publishing Tools Processed Indexes Integration Services Applications Portals Open Journal System Scholarly Publishing Other Review Systems Submission Acceptance Revision Peer Review Publication International Journal of Biodiversity Data auto conversion to manuscript Registry GBRDS DoI

Notas del editor

  1. DIGIT has moved from its NHC focus (specimen, observation, multimedia, impact assessments, domain specific task groups). Data Resources Discovery – GBRDS is planned as registry of biodiversity resources, GBRDS Stakeholders workshop, GBRDS as tool for investment in BI. GSAP-NHC has recommended that metadata creation is way forward to expedite NHC digitisation. Innovative approaches are being adopted by the network Participants as fall out of targets set by 2009-2010 WP. Data Mobilisation Strategy Discussions – assess realities, challenges, and potentials of the Participants Data Publishing Framework Task Group: Data Publishing on par with Scholarly publishing: (a) recommendation on data discovery and publishing, (b) data publishing together with scholarly publishing, (c) Data Paper, (d) Data Usage Index, (e) Data Citation Mechanism