Kishor Presentation
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The presentation lists various approaches for analysing microarray data using R/Bioconductor.
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- 1. Design and Analysis Strategies for DNA microarray data: hits to targets
- 9. Preprocessing methods (BMC Bioinformatics 2006, 7 :105)
- 19. Experimental designs supported by SAM (Chu, G., Narasimhan, B., Tibshirani, R. & Tusher, V. (2002), Signicance analysis of microarrays (sam) software)
- 20. Sample input format (Chu, G., Narasimhan, B., Tibshirani, R. & Tusher, V. (2002), Signicance analysis of microarrays (sam) software)
- 21. SAM statistics (Chu, G., Narasimhan, B., Tibshirani, R. & Tusher, V. (2002), Signicance analysis of microarrays (sam) software)
- 23. SAM plot
- 27. Subramanian, Tamayo, et al. ( 2005, PNAS 102, 15545-15550 )
- 28. Leading edge subset Subramanian, Tamayo, et al. ( 2005, PNAS 102, 15545-15550 )
- 29. Subramanian, Tamayo, et al. ( 2005, PNAS 102, 15545-15550 )
- 32. Enriched gene sets Phenotype (http://www.broad.mit.edu/gsea/resources/gsea_pnas_results/p53_C2.Gsea/gsea_report_for_WT_1130958999391.html)
- 33. Enriched gene sets in mutant (http://www.broad.mit.edu/gsea/resources/gsea_pnas_results/p53_C2.Gsea/gsea_report_for_MUT_1130958999391.html)
- 39. biomaRt ( Bioconductor interface to BioMart Software Suit [ http://www.biomart.org/ ] ) (The biomaRt user’s guide Steffen Durinck, Wolfgang Huber)
- 43. Alexa et al. Bioinformatics , 13, 1600-1607, 2006
- 45. A.Alexa et al. Bioinformatics , 13, 1600-1607, 2006