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Causality in clinical epidemiology. Some
factors which could hamper causal inference
                Saskia le Cessie

           Clinical Epidemiology LUMC
New concept in epidemiology: DAGs
• What are DAGS?


• How can they be used in epidemiologic research?


• Are they of any practical use? Example: the NEO study




                            2                   Monday, October 15, 2012
What is a causal DAG?

• DAG: Directed Acyclic Graph

• “Directed” : an arrow indicates a causal relation

          E                            D

   • E (exposure) causes D (disease)

• “Acyclic”: no variable can causes itself

• Using some simple rules, DAGs can help detecting
  confounding and selection bias




                              3                       Monday, October 15, 2012
DAG rule 1: two variables are associated if they are
    connected by a (non blocked) path
1. Example 1:


    E             B                 D

•   E and D are associated

Unhealthy             obesity           Osteoarthritis
diet




                                4                        Monday, October 15, 2012
Example 2


                            C


          E                                    D


•   E and D are associated: there is a path from E via C to D


•   But there is no causal relation between E and D


•    CONFOUNDING



                                5                      Monday, October 15, 2012
Confounding in DAGS


                              C

                              ?
             E                                   D

•   The common cause C confounds the relation between E and D.


•   DAG language: there is a ‘backdoor path’ from van E via C to D


•   Backdoor path from E to D: path starts at E, against the flow(up to a
    cause of E) to C, than proceed to D




                                    6                      Monday, October 15, 2012
DAG rule 2: backdoor paths confound. Observed effects
    differ from causal effects
                              C

                              ?
            E                                   D
•    E-C-D is backdoor path
                              C


           E                                    D

•    E-C-D is NOT a backdoor path (there is a direct effect from E on
     D and an indirect effect via C)




                                  7                    Monday, October 15, 2012
DAG rule 3: paths are blocked by conditioning/
  stratification

                           C

                          Oke !
                           ?
         E                                    D


• Stratification/adjusting for C closes the backdoor path E-C-D
• We indicate stratification by a box
• If all backdoor path are closed, the causal effect of E on D can be
  estimated




                                  8                     Monday, October 15, 2012
Problem: colliders


                                Physical activity       Obesity gene
A                      B



          D                                    Obesity
    • A and B are both independent causes of D


    • D is called a collider, because two directed arrows collide at D




                                     9                       Monday, October 15, 2012
DAG rule 4: a collider blocks a path


                    A                      B



                               D

• The path from A via D to B is blocked because D is a collider


• A and B are independent




                               10                      Monday, October 15, 2012
Stratification on a collider


 Physical activity              Obesity gene




                     Obesity

• Consider group of obese subjects. What do you expect from a
  obese person without obesity genes?
• Probably a couch potato
• Association between physical activity and obesity genes within
  obese subjects


                               11                     Monday, October 15, 2012
DAG rule 5: conditioning on a colider induces
  dependency (opens a path)



             A                        B



                         D

Selection bias : conditioning on colliders




                                 12          Monday, October 15, 2012
NEO (Netherlands Epidemiology of Obesity) study
• Ralph Rippe, Martin den Heijer, Renée den Mutsert




• Aim: Investigate disease pathways in overweight or obesity
• Population-based, prospective cohort, age 45-65 with
  oversampling of obese subjects


• Obese: BMI > 27 (n ≈ 5994)
• Normal (n ≈ 900)




                            13                   Monday, October 15, 2012
Questions
• 1) When is selection on BMI a problem?


• 2) if so, how can we solve it?




• DAGs help to think about these questions




                              14             Monday, October 15, 2012
Different scenarios with selection/stratification on BMI
1. BMI is cause of exposure
        B           E              D
•No backdoor paths, no collider bias
•No problems


2. BMI is risk factor for the disease, independent of E
             E
                          D
             B
•No backdoor paths, no collider bias
•No problems

                              15                   Monday, October 15, 2012
Different types of selection/stratification on BMI
3. E is a cause of B, and affects D. U is another cause of B,
and affects D
          E
                       B            D
          U

•Selection on B (collider) creates a backdoor path E-U-D
•Related to index event bias
•Solution 1. Block path E-U-D, by conditioning on U
•Solution 2: use control group, adjust by inverse probability
weighting

                               16                  Monday, October 15, 2012
Different types of selection/stratification on BMI
4. B is an intermedair



        E            B              D


•Estimating direct effect of E still possible: the effect of E on D
in subjects with overweight


•Estimating indirect effect/total effects , control group is needed




                               17                     Monday, October 15, 2012
Conclusion
• DAGs are a very useful tool in the design and analysis of
  studies


• Confounding: existence of common causes, backdoor paths
• Selection bias: conditioning on a collider


• NEO study: find optimal way to obtain causal effects in
  situation 3 and 4 (efficient ways of weighting observations)
• Incorporate that BMI is proxy for “obesity”




                              18                   Monday, October 15, 2012

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Kickoff meeting Le Cessie

  • 1. Causality in clinical epidemiology. Some factors which could hamper causal inference Saskia le Cessie Clinical Epidemiology LUMC
  • 2. New concept in epidemiology: DAGs • What are DAGS? • How can they be used in epidemiologic research? • Are they of any practical use? Example: the NEO study 2 Monday, October 15, 2012
  • 3. What is a causal DAG? • DAG: Directed Acyclic Graph • “Directed” : an arrow indicates a causal relation E D • E (exposure) causes D (disease) • “Acyclic”: no variable can causes itself • Using some simple rules, DAGs can help detecting confounding and selection bias 3 Monday, October 15, 2012
  • 4. DAG rule 1: two variables are associated if they are connected by a (non blocked) path 1. Example 1: E B D • E and D are associated Unhealthy obesity Osteoarthritis diet 4 Monday, October 15, 2012
  • 5. Example 2 C E D • E and D are associated: there is a path from E via C to D • But there is no causal relation between E and D •  CONFOUNDING 5 Monday, October 15, 2012
  • 6. Confounding in DAGS C ? E D • The common cause C confounds the relation between E and D. • DAG language: there is a ‘backdoor path’ from van E via C to D • Backdoor path from E to D: path starts at E, against the flow(up to a cause of E) to C, than proceed to D 6 Monday, October 15, 2012
  • 7. DAG rule 2: backdoor paths confound. Observed effects differ from causal effects C ? E D • E-C-D is backdoor path C E D • E-C-D is NOT a backdoor path (there is a direct effect from E on D and an indirect effect via C) 7 Monday, October 15, 2012
  • 8. DAG rule 3: paths are blocked by conditioning/ stratification C Oke ! ? E D • Stratification/adjusting for C closes the backdoor path E-C-D • We indicate stratification by a box • If all backdoor path are closed, the causal effect of E on D can be estimated 8 Monday, October 15, 2012
  • 9. Problem: colliders Physical activity Obesity gene A B D Obesity • A and B are both independent causes of D • D is called a collider, because two directed arrows collide at D 9 Monday, October 15, 2012
  • 10. DAG rule 4: a collider blocks a path A B D • The path from A via D to B is blocked because D is a collider • A and B are independent 10 Monday, October 15, 2012
  • 11. Stratification on a collider Physical activity Obesity gene Obesity • Consider group of obese subjects. What do you expect from a obese person without obesity genes? • Probably a couch potato • Association between physical activity and obesity genes within obese subjects 11 Monday, October 15, 2012
  • 12. DAG rule 5: conditioning on a colider induces dependency (opens a path) A B D Selection bias : conditioning on colliders 12 Monday, October 15, 2012
  • 13. NEO (Netherlands Epidemiology of Obesity) study • Ralph Rippe, Martin den Heijer, Renée den Mutsert • Aim: Investigate disease pathways in overweight or obesity • Population-based, prospective cohort, age 45-65 with oversampling of obese subjects • Obese: BMI > 27 (n ≈ 5994) • Normal (n ≈ 900) 13 Monday, October 15, 2012
  • 14. Questions • 1) When is selection on BMI a problem? • 2) if so, how can we solve it? • DAGs help to think about these questions 14 Monday, October 15, 2012
  • 15. Different scenarios with selection/stratification on BMI 1. BMI is cause of exposure B E D •No backdoor paths, no collider bias •No problems 2. BMI is risk factor for the disease, independent of E E D B •No backdoor paths, no collider bias •No problems 15 Monday, October 15, 2012
  • 16. Different types of selection/stratification on BMI 3. E is a cause of B, and affects D. U is another cause of B, and affects D E B D U •Selection on B (collider) creates a backdoor path E-U-D •Related to index event bias •Solution 1. Block path E-U-D, by conditioning on U •Solution 2: use control group, adjust by inverse probability weighting 16 Monday, October 15, 2012
  • 17. Different types of selection/stratification on BMI 4. B is an intermedair E B D •Estimating direct effect of E still possible: the effect of E on D in subjects with overweight •Estimating indirect effect/total effects , control group is needed 17 Monday, October 15, 2012
  • 18. Conclusion • DAGs are a very useful tool in the design and analysis of studies • Confounding: existence of common causes, backdoor paths • Selection bias: conditioning on a collider • NEO study: find optimal way to obtain causal effects in situation 3 and 4 (efficient ways of weighting observations) • Incorporate that BMI is proxy for “obesity” 18 Monday, October 15, 2012