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Plenary 3 Co-chairs:   Sally Green and Helen Whelton Pembroke
The Human Genome Epidemiology Network (HuGENet): making sense of 10,000,000 postulated genetic risk factors   John P.A. Ioannidis Department of Hygiene and Epidemiology University of Ioannina School of Medicine, Ioannina, Greece and Tufts University School of Medicine, Boston, USA
Human Genome Epidemiology Network (HuGENet) ,[object Object]
[object Object],[object Object],[object Object],[object Object],[object Object],“ Systematic application of epidemiologic methods and approaches to assess the impact of human genetic variation on health and disease”  Khoury, Little and Burke, HuGE 2004 HuGE problem:  25,000 genes, their combinations and interactions with risk factors
From Genetics to Genomics ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Counting fish in the sea of gene-disease associations Ioannidis, Trends Mol Med 2003 Candidate analyses 1 quadrillion Investigators >10 Genetic contrasts >10 Subgroups >10 Outcomes >10 Diseases >1000 Gene variants >10000000 Parameter Multiplier
Major postulated problems of human genome epidemiology ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Background issues ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Small sample size
Small genetic effects Ioannidis , Trikalinos, and Khoury ,  Am J Epidemiol 2006
Number of Published Human Genome Epidemiology (HuGE) Papers*  2001-2005 ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],*  Data from HuGE Published Literature Database
Epidemiologic Studies/Platforms Analyses and Publications   Knowledge Integration Knowledge Dissemination Network of  Networks/ P3G Guide Health Services & Inform Public Policy  Guide Research Agenda The HuGENet “Road Map”
HuGENet “Network of Networks” Nat Genet Jan 2006
Examples of Network-based HuGE Study Platforms ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Study Platforms: Methodologic Implications ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Non-replicated diminishing effects Ioannidis  et al ,  Nature Genetics 2001
Breast cancer: a “null” field for common genetic variants? Ioannidis , JNCI 2006 and Pharoah et al. JNCI 2006
The other side: don’t give up early
H: heterogeneity R/F: difference in first vs. subsequent D1-D3: small-study bias diagnostics RS/FS: significant findings (with/without first studies) Ioannidis  et al, Lancet 2003
Succession of early extremes: the Proteus phenomenon Ioannidis and Trikalinos, J Clin Epidemiol 2005
Language bias and global science Pan et al. PLoS Med 2005
Measurement error: insight from a collaborative analysis ,[object Object],[object Object],Maraganore et al ,  JAMA 2006
Let us add the environment Hunter D. Nat Rev Genet 2005
Genomic Tests: a Public Health Issue ,[object Object],[object Object],[object Object],[object Object],[object Object]
“ Genomic profiling to promote a healthy lifestyle: not ready for prime time”  Haga S et al. Nat Genet 2003
[object Object],[object Object],[object Object],[object Object],[object Object],Knowledge Integration Across Disciplines:  Evaluation of Genetic Tests   http://www.cdc.gov/genomics/activities/fbr.htm
 
 
Research on genetic risk factors ,[object Object],[object Object],[object Object]
Plenary 3 Co-chairs:   Sally Green and Helen Whelton Pembroke

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The Cochrane Collaboration Colloquium: The Human Genome Epidemiology Network: making sense of 10,000,000 postulated genetic risk factors

  • 1. Plenary 3 Co-chairs: Sally Green and Helen Whelton Pembroke
  • 2. The Human Genome Epidemiology Network (HuGENet): making sense of 10,000,000 postulated genetic risk factors John P.A. Ioannidis Department of Hygiene and Epidemiology University of Ioannina School of Medicine, Ioannina, Greece and Tufts University School of Medicine, Boston, USA
  • 3.
  • 4.
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  • 6. Counting fish in the sea of gene-disease associations Ioannidis, Trends Mol Med 2003 Candidate analyses 1 quadrillion Investigators >10 Genetic contrasts >10 Subgroups >10 Outcomes >10 Diseases >1000 Gene variants >10000000 Parameter Multiplier
  • 7.
  • 8.
  • 10. Small genetic effects Ioannidis , Trikalinos, and Khoury , Am J Epidemiol 2006
  • 11.
  • 12. Epidemiologic Studies/Platforms Analyses and Publications Knowledge Integration Knowledge Dissemination Network of Networks/ P3G Guide Health Services & Inform Public Policy Guide Research Agenda The HuGENet “Road Map”
  • 13. HuGENet “Network of Networks” Nat Genet Jan 2006
  • 14.
  • 15.
  • 16. Non-replicated diminishing effects Ioannidis et al , Nature Genetics 2001
  • 17. Breast cancer: a “null” field for common genetic variants? Ioannidis , JNCI 2006 and Pharoah et al. JNCI 2006
  • 18. The other side: don’t give up early
  • 19. H: heterogeneity R/F: difference in first vs. subsequent D1-D3: small-study bias diagnostics RS/FS: significant findings (with/without first studies) Ioannidis et al, Lancet 2003
  • 20. Succession of early extremes: the Proteus phenomenon Ioannidis and Trikalinos, J Clin Epidemiol 2005
  • 21. Language bias and global science Pan et al. PLoS Med 2005
  • 22.
  • 23. Let us add the environment Hunter D. Nat Rev Genet 2005
  • 24.
  • 25. “ Genomic profiling to promote a healthy lifestyle: not ready for prime time” Haga S et al. Nat Genet 2003
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  • 30. Plenary 3 Co-chairs: Sally Green and Helen Whelton Pembroke