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Defining Spatial Entropy from Multivariate
     Distributions of Co-Occurrences
                          Didier G. Leibovici


                    Centre for Geospatial Sciences,
                     University of Nottingham, UK

                   didier.leibovici@nottingham.ac.uk


Spatial Statistics, Multiway Data, Marked Point Process, Spatial Pattern,
                  Spatial Interaction, Multi-Scale Analysis
                              Co-Occurrences,


                                  COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
•         measuring spatial organisation:
                 - historical perspectives
                           - multivariate co-occurrences for Spatial
Entropy

•         ways of counting co-occurrences

•         potential applications ( CAkOO, SOOk, SelSOOk)

•         further issues




                                 COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
measuring uncertainty, information content, diversity, entropy



Statistical thermodynamics                                        economy


                                                                 ecology


    Signal processing                                   geography


                                                       etc ...




                                 COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
measuring uncertainty, information content, diversity, entropy

Uniform distribution




                                        normalisation /standardisation




                               COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
but ... Spatially !!!???




COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
Some solutions

•   similar to Moran’s index and correlation ( Karlström & Ceccato 2002)              e
                                                                                   nc
                                                                              Sc ie
                                                                         n al
                                                                       io
                                                                 Reg
                   weights



•   focusing on proximities ( O’Neill et al. 1988)
                                                                                  y
                                                                               log
                                                                           eco


                                adjacent to




                                    COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
Some solutions ...

•   Markov Random Field ( Maitre et al. 1994, 2000)
                                                                                    is
                                                                                l ys
                                                                          a   na
                                                                     e
                                                                   ag
                                                                 Im
                             of topological pattern

                                                                                             is
                                                                                        l ys
•   “geo-discriminant” analysis ( Claramunt, 2005 Li and Claramunt 2006)
                                                                                    a na
                                                                                l
                                                                             ica
                                                                          ph
                                                                    g   ra
                                                                  eo
                                                                 G
            within class i
                               discriminant weights
             between i and other classes



                                   COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
airs
 • •   •                 re of p
•                  ctu
  •  •         stru
• •
weighting by topology,
using topological distribution
or both
                                                        k> 2
                                                 or der
                                  s of
                              nce
                         urre
                 co -occ             • •   •
                                    •
                                      •  •
                                    • •


                     COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
The co-occurrences at various orders, of attributes from the same
     or different processes, build multinomial distributions at the root of

     spatial organisation and interactions of processes according
     to: the collocation distance, and the order of collocation.


Spatial entropy




                                   COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
an example



                       Spatial entropy with
                       increasing orders




        COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
12/21
Counting events

                          a Spatio-Temporal “event”
(i)     a person of age i with social class level j, diagnosed for a certain disease
        k and living at location s
(ii)    a plant species i, on a soil class j, at location s with annual rainfall k

(iii)   a crime of type i, at time slot j, in a zone of wealth class k of location s




 (i) is multivariate on the persons
 (ii) is a collocation of different measurements
(ii) is a mixture of both.




                                           COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
ways of counting co-occurrences
geometrical aspects

Attributes (univariate/ multivariate)




                                   COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
potential applications

                          a Spatio-Temporal “event”
(i)     a person of age i with social class level j, diagnosed for a certain disease
        k and living at location s
(ii)    a plant species i, on a soil class j, at location s with annual rainfall k

(iii)   a crime of type i, at time slot j, in a zone of wealth class k of location s



                                                                        SOOk CaKOO
looking for associations of vI, vJ , vK variables
                    in their spatial co-occurrences, scale-effect
                   interaction of variables     spatial pattern,



looking for list of variables most structuring the events                    SelSOOk
                                           COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
SOOk, SelSOOk and CAkOO
                                    SOOk analysis proposes to use plot
                                            the Spatial Entropy index
                                    against distance




                             "hi hi hi" "ma ma ma" "wh hi hi" "wh ma ma“
                                3.38%       2.23%      1.70%     1.41%




                                  "mi mi bl" "mi bl bl" "re mi bl" "wh mi bl"
                                     0.0152% 0.0180%      0.0365%    0.0467%




d=0.15       blackoak   hickory      maple     misc   redoak    whiteoak
 Hsu=0.893      7%        27%         23%       7%       16%       20%



                              COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
Age
                                                                                                                                                       1
                                                                                                                               131 3
                                                                                                                            5111353
                                                                                                                              333113
                                                                                                                              5 1531
                                                                                                                             3111135
                                                                                                                               53
                                                                                                                            51511353
                                                                                                                               31                              1     5
                                                                                                                                                                     5
                                                                                                           51
                                                                                                           351 31
                                                                                                           311 13 3          3115 15
                                                                                                                               55
                                                                                                                              5131351 3
                                                                                                                              15333
                                                                                                                              351 3
                                                                                                                                15 1 5        3
                                                                                                                                                33
                                                                                                                  5          1 55 1 3
                                                                                                                            55351555
                                                                                                                          1 11311331
                                                                                                                                     1
                                                                                                                             3 53 3331
                                                                                                                                 3 5 3
                                                                                                                                     1                 5
                                                                                                            1 51 5 3        1355 531
                                                                                                                              11111
                                                                                                                                33 5
                                                                                                                                 55          551
                                                                                                                                               5
                                                                                                                                               31
                                                                                                                                               1               1
                                                                                                             3 13
                                                                                                             3313                3
            -                     +                               - not resistant                                                           1
                                                                                                                                                               3
                                                                  + resitant                                         1                                     1 113
                                                                                                                                                          35351
                                                                                                                                                          115335
                                                                                                                                                             51
                                                                                                                                                           315 5
         1450                      428 MRSA                                                                                       31           5      3 13331133
                                                                                                                                                          3 13 5
                                                                                                                                                             13
                                                                                                                                                      5 1 1 355
                                                                                                                                                      1 13 51 3
                                                                                                                                                           5 35
                                                                                                                                                      3 51 53 5
                                                                                                                                                             55
                                                                                                                                                             33
                                                                                                                                                             11
                                                                                                                                                              3
                                                                        -                                                         31
                                                                                                                                 35
                                                                                                                                 15 5       3            1 5331 551 113
                                                                                                                                                             1 1 51 3
                                                                                                                                                          3 3353 33 3 11
                                                                                                                                                             5 15 31
                                                                                                                                                             1 11 3
                                                                                                                                                            53 55553113
                                                                                                                                                             3 31 1
                                                                                                                                                             1 133 31
                                                                                                                                                             5 3 151 3
                                                                                                                                                             5 5 1
                                                                                                                                                             3 1 313 1
                                   - ----- -
                              - +++ - -
                                     +-
                              - -------- ----
                              +--+--+ +--
                                      +--                                            -       -+                     5             11                            515 51
                                                                                                                                                              1 1133 53
                                                                                                                                                             5 315131 1
                                                                                                                                                             1 13315133
                                                                                                                                                                   53
                                                                                             +
-- - - -                        - --++ - + -
                                   - -+- -+
                               + ++ +                            --                                                   5            1                          5 3 3113
                                                                                                                                                          5513 133 51 1
                                                                                                                                                                   3 5
                                                                                                                                                                   1 3
                                                                                                                                                                   31
                                                                                                                                                             3 335 153
                                                                                                                                                         1353 5111111 3
++-- + +
       --        -
                                  - - + --
                                        - +  -             -            -                                                          3                   3 3 1 53 3 3 5
                                                                                                                                                        315 5
                                                                                                                                                   1 155 133 31131 3513
                                                                                                                                                          3 1 33 53 1 5
                                                                                                                                                                 1
                                                                                                                                                                5 3
        -                           ++ - - -
                                       -- - -
                               --- +--- - +-+ -                                                                                    1                          5 1 1 5 31 1
                                                                                                                                                              15 33 1
                                                                                                                                                                 1 3 1
                                                                                                                                                             1 33 15131
  - ++- + -              -    -- + -
                                 +- -- ++--
                                    - + - -+ -                                                                          1          5                3            3 111
                                                                                                                                                                 5 1 13
        +                      - - + -+
                                     +
                                   + - -+               - +-- -
                                                           +-                        -                                  11
                                                                                                                          3 351 1 1
                                                                                                                          5 33 3                                 5 1
                                                                                                                                                                 1
   - -
  + -+
     +                              -                                                                                      5 55   5
                                                                                                                                 51
                                                                                                                               51 1155 5 1
                                                                                                                                 113 1 3
                                                                                                                                 33511 1         3       3      35 35
                                                                                                                                                                51 3
                                                                                                                                                                 3
                                                                                                                                                                 5
                                                                                                                                                                 1
                                                                                                                                                                13 3 3
                                                                                                                                                                 3
                                                                                                                                                                 1
                                                        -                                                                          33 3
                                                                                                                                 5115 1
                                                                                                                                11553115
                                                                                                                          3 335313 3 3
                                                                                                                           3 133 35 5 5
                                                                                                                                  5 33 3
                                                                                                                          3 5 3553 5
                                                                                                                           5      5 555 1
                                                                                                                                   5 531
                                                                                                                                  1 31 55
                                                                                  +                                                    5
                                                                                                                                       5
                                                                                                                                       3
                +                                                         ------- --
                                                                         - -
                                                                         - +   +- +
                                                                          -- --+-+
                                                                  - --- +- +--- +                                                 5351155
                                                                                                                                       3
                                                                                                                                       1
                                                                                                                                      13155
                                                                                                                                      151
                                                                                                                                       1 53
                                                                                                                                      11 33
                                                                                                                                       53
                                                            -     - --+ -+- +
                                                                  - + - ++- -  -                                                       35 351
                                                                                                                                       53131533
                                                                                                                                     551 13 5553
                                                                                                                                     3 3 5 151
                                                                                                                                     1 5 511335
                                      --                               -- --+-+-- -- - -----
                                                                              -+- -
                                                                               -                                         3            1 5 11
                                                                                                                                       51 3
                                                                                                                                     353 1 1155
                                    +--+
                                     - ---             -                      ------ --+ +- - --
                                                                               -
                                                                             -+ - --- - -                              55 3
                                                                                                                      1551 5          51 531
                                                                                                                                         3
                                                                                                                                      35 11111
                                                                                                                                      1 5 35
                                                                                                                                      5 3 3 33
                                                                                                                                      3 3 1551
                                                                                                                                       55
              -                        --                                     + --- --+------
                                                                               + -
                                                                               -
                                                                               - + - --
                                                                               +
                                                                                - +- -+-- -- +
                                                                                         - -
                                                                                    --- --- -- -
                                                                                                                      3553531 3351 335
                                                                                                                     33 55 31
                                                                                                                          3 5
                                                                                                                      355 3 333 11
                                                                                                                      515
                                                                                                                     53 11335 5 1 1 1 13
                                                                                                                    113313513535555 11
                                                                                                                      5135 5 5 5 15 3
                                                                                                                        3333                                                 626
                                                                                    + - +-                        13531 51 5 3551 3 5
                                                                                                                   15311515 1355153 13
                                                                                                                    13135353 5 353 3
                                                                                                                      55           5 5
                                        +                                      - -+ -+---+ -
                                                                        -- ----- +------------ -
                                                                                             +                      3551 5
                                                                                                                      1
                                                                                                                      5 5 1 31
                                                                                                              3 3 5511513153133113 351 5
                                                                                                                     3 5 3 5 15355 1
                                                                                                                 5 35151333 1335133 551
                                                                                                                     5                                       1 <45
                 -                                                  - + +- - ----- -- + +
                                                                                       + - -+
                                                                   +- +-- -+ -+-- - - -- +
                                                                      - + +- -- - - +
                                                                        - -+                       -          1 3 111331135113511 5331
                                                                                                                    53315515555115 1 13
                                                                                                                     5 1 15 3 55
                                                                                                                    31 5 335315353 3 1
                                                                                                                      3 3 33
                                                                                                                      5 5353 5 15
                                                                                                                      5 15 13 33
                                                                                                                      3 5                                    3 45-75         616
                                                              -                                               5 111115 331131355553351
                                                                                                                      5
                                                                                                                  3 5 3 111 311513 333
                                                                                                                   5 3 15 553 3
                                       +-
                                        -                       -              + +--- + ---------
                                                                                    + - - - -
                                                                               - + + + -+-+
                                                                                   - - -- +                        551 5       3 3 155 1 53 5
                                                                                                                               1 1535 1 33 5
                                                                                                                               5 3 5 53
                                                                                                                5 11333155313513 1 351133
                                                                                                                 3 51 115513151553 3335 1
                                                                                                                               3 155135 55 5
                                                                                                                               3 551
                                                                                                                               1 51351 5 5 3
                                                                                                                                     5
                                                                                                                               553 1 5
                                                                                                                                              5
                    +
                   --                                                              -+  -        --             5                   3
                                                                                                                             35 53 5
                                                                                                               3331 51531111 133 3 51 3
                                                                                                                1         135351 1 13
                                                                                                                                  3                          5 >75
                        -
                        +-        - -
                                 -+-- - -
                                   -- -
                                   -                                    -            --- - -
                                                                                    +-- + --
                                                                                     -- -                                  513 553 315 535
                                                                                                                               13
                                                                                                                     5 3311111511155331
                                                                                                                     3 13135551135315111 5
                                                                                                                             15 55 5 513 55
                                                                                                                   53 551131533353113111
                                                                                                                           353 1 1 1 133 333
                                                                                                                             53531 5551 13 3
                                                                                                                              3 31 3 31 5 55 5
                                                                                                                               1 3 51 13
                                                                                                                              5 15 3 3 1 1                                   636
                               - ++- - -
                                    -
                                    -                       -          +             -
                                                                                    +--                                    3 531 31 3 33
                                                                                                                           31  331 1 5 311
                                                                                                                               5
                        -- ------+++-+- -- ----
                         + - --------+-- +-
                                  - --- --- -- -+
                                             +                                                                                11355 5
                                                                                                                              31531 3
                                                                                                                              3111331
                                                                                                                                3315
                                                                                                                                333
                                                                                                                                             13
                                                                                                                                             15
                        -
                        +             -- -+ - +-- -
                                      + +++
                                      - -
                                          -- --                                                                                 33
                                                                                                                                 15
                                      - - -- -+-
                                      + - ------ -----
                                             - - --
                                            ---- +++--
                                             +-
                     --                   ++ --- ----- +-+- --
                                           -- + +-- +---
                                             +
                                           --- -+ - ++---
                   - --- -
                      +                      +--- - +-+--+
                                                  -
                                             - - +-- -
                                                         ++
               +----+- -
                +- - +
                 - - - +-                   +- + -- + -
                -------+ --+ - - - -+---- - ------
                                              +-
                                              -- +-
                -- - -
           - -+-+ --- -+- +- - --+- -- - -
                 -
                -+ +
                                             -
           +---+----+-+------ - ---+------+ -+ - -
                                            - - +
                                                                                                                                                 somewhere in UK
              -+------------- --- -----+-++ - -
                -+ - -- --- + --+ -+ -
                -- - +- - - + -
        - +-+ +- +-+-- - + - + +
    -- -+ +---- +++-+ - -+-+- - -- --
            --- +- ++-+ +- - + - -+ --- -+
              + -- - -+- - + + --+ +- - -
                           -
                           ++                   -
    + -- --+ +----- --- + --------+-+--- -++- ---
    -           --          ++ - - +- ---
              -+- -- -+-- ++---++- + -++ -+ --
                               + - + +-+       -
                                                -     ++-
                                          --+ -- ++---- - -
       --- - - --- -- + --+ -+- ---
                               - -
                              -+ --- ---
      +- + --- -++-++-+-+- +- + - +- -
      - -+              - +-- ++ -   + - - -
                                           - - - -
                                                       -
                       +-+---- ----- ---- --- --+- - ---- +
                           -- -- - --- + ++ -++
                        -++-- -++ - - -+- -+ + ---
                                - -+
           -+  -         --+-+- --++-- +-+- +---- -
                            - + - - ---+- -- -+-
                              +- - +- ----+--- -----
                               - -+
                               - +- - -++ ++      -       +
                                                                                                                    -1 -3 -5 +1 +3 +5
                              ----+-- --- -
                                     --
                              - --+++--+                ---
                                - -- -- +
                                 +     -                                                                           571 478 401 55 138 235

                                                                                                                            Epidemiological study
                                                                                                                            Infectious disease dataset
                                                                                                       COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
SOOk, SelSOOk and CAkOO


  also Spatial Entropy of Self-co-occurrences




                          = 0.6533133       d=2000




   COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
SOOk, SelSOOk and CAkOO
                                                                      SOOk map of local Spatial entropies (d=2000)



                       RSA.ppp
                                           -
                   oo+ +o
                 ooooo+o
                       +
                      oo
                 ooooooo
                  ooooooo
                    o oooo
                       o
                                     -
                                                    -    --
ooo +o
o+                 oooooo
                    oooooo +
oo+ oo +
       o
 o ooo o o
    o o
                     oo o
                      o
                  o oo ooo+
                     oo oo o
               - oooooooo
                  oooooooo
                       o o
                   oo oo o
                     oo o
                                  o -
                                   oo
                                 ooo
                                   o
                                           -
                                                   -             O   0.888< HSu
  o o
  o o                o o

           -
                                o
                                                    o            +   0.7 < HSu < 0.888
                                              +ooooo
                                              o oooo
                                               + ooo
                                               o oo
                    ++
                     oo
                    oo
                     o
                      o
                      o        -
                                  -             oo o
                                          + ++oooooo
                                          + ++ ooo + +
                                                  o
                                             +o oo o + +
                                                  o
                                                  oo
                                                 o o o+ ++
                                                 oo o o+ +++
                                                oooo +++ ++ -
                                                  o + +
                                                oooo++ +++
                                                  o +++ +
                                                  + o
                                                  o o +++ +
                                                                 -   HSu<= 0.7
       -              o                           o ooo++++
                                                       o++ +
                                                      oo +
                                                        o +
         -            o                           o ooo++
                                                  o oo o
                                                  o o+
                                              o o ooo+++
                                           ooo+oo oooo+++ +
                                            oo ooo oooo++ +
                                                          +
                     +                -        o oo ooooo+++
                                                o o ooo o+ ++
                                                      o o+ +
                                                  o oo o ++ +
                                                     o o+
           +
           ++         +                 -         o oo o++++
                                                     ooo ++ ++
                                                      o + ++
                                                      o +
              + ++ o
                   ++
             + +++ o o
                  +++
                   ++
                     o
                                    -         -      oo + +
                                                     o+ + +
                                                      o
                                                      o
                                                      +
                                                      +
             + ++++++o oo+
                   +++o
                      +
                ++++++ o
              + ++++++ oooo
             + ++++o++o
              + +++o+ o o
                     ++o+ o
                        oo
                    + +o +
                       oo o
                          o
                    + oo o o
                          o
                          o
                     +oo+ ooo
                         o o
                         o o
                         o
            +           ooo oooooo
                         oo oo
                       ooo ooooo o
                          oo
                        oooooooo o
                         oo o oo
            +
            +            oo ooooo
                         oo oooo
                                oo
                                 o
         ++ + ++
         ++ +
        ++ +o +           oo ooo
          ++oo o o ooo oo
          +
             oo o + oo +
      +++++ ooooooooooooo
       +++++ooo ooooooo o+
         +++ o             o
      + ++++oo oooooo o oo
         +o
         + oo o o o
       +o o+ oooo o o+ o
            +             o o
         + +o
  o o oo++ooooooo+oooo oo++
  o + o++ooooooo ooooo oooo
         ++
       oo +oooo oo oo o o
       oo+oooooooooooo o oo
         + o
                               o
        oo + oo oo o o
      oooo+ooooooooooo oooo
       o+ + ooooooooo o oooo
              o o oo  o
                     oooo oo
  + ooo + o ooooooooooo ooo
          +oo oo ooo++o ooo +
                 o oo
   o + ++ o oo oooo+ o ooo o+
    o          o ooo o
   oo oo oooooooo++o+ ooo o+
    o          o oo + o
             o+ ooo + +o o o +
             ++oooo + ooo o oo
     o o ++ooooo+++ooooooo +
              +++ o+++ oo ooo
      oo ++oooo++o++oooooo +
                     o +
                     ++ o o o
              + o oo+o ++ ooo
              +oooo++ ++o oooo
                 o o+++ ++ oo
                 o++o + + oo
                 o+
                +o++o+
                oo++ +
                +o++++          oo
                  + o
                  o
                  oo+




                                                                          COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
Liti, north of Thessaloniki
                              plant OPEN.               plant LOW.             plant HIGH.




Ecological study – semi-natural.
plant community data      plant TREE.                    plant S.T.            plant PATCH




Transect dataset
plant community
and vegetation indices


                               plant TEX                plant SLOPE             plant ASP




fuzzy clustering
on Transect data




                                            COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
SOOk, SelSOOk and CAkOO
SelSOOk analysis proposes to use
      the Spatial Entropy in a PEGASE (CART) like Regression Tree




                            COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
SOOk, SelSOOk and CAkOO

         CA2OO and CAkOO methods
• based on Correspondence Analysis (order 2)




• k-way table (order>2) using PTAk (R package)




                      COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
CAkOO d=0.1 Lansing data




              COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
COSIT 2009 - Defining a spatial entropy from co-occurrence data
COSIT 2009 - Defining a spatial entropy from co-occurrence data
COSIT 2009 - Defining a spatial entropy from co-occurrence data
COSIT 2009 - Defining a spatial entropy from co-occurrence data
COSIT 2009 - Defining a spatial entropy from co-occurrence data
COSIT 2009 - Defining a spatial entropy from co-occurrence data
COSIT 2009 - Defining a spatial entropy from co-occurrence data
COSIT 2009 - Defining a spatial entropy from co-occurrence data

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COSIT 2009 - Defining a spatial entropy from co-occurrence data

  • 1. Defining Spatial Entropy from Multivariate Distributions of Co-Occurrences Didier G. Leibovici Centre for Geospatial Sciences, University of Nottingham, UK didier.leibovici@nottingham.ac.uk Spatial Statistics, Multiway Data, Marked Point Process, Spatial Pattern, Spatial Interaction, Multi-Scale Analysis Co-Occurrences, COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 2. measuring spatial organisation: - historical perspectives - multivariate co-occurrences for Spatial Entropy • ways of counting co-occurrences • potential applications ( CAkOO, SOOk, SelSOOk) • further issues COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 3. measuring uncertainty, information content, diversity, entropy Statistical thermodynamics economy ecology Signal processing geography etc ... COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 4. measuring uncertainty, information content, diversity, entropy Uniform distribution normalisation /standardisation COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 5. but ... Spatially !!!??? COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 6. Some solutions • similar to Moran’s index and correlation ( Karlström & Ceccato 2002) e nc Sc ie n al io Reg weights • focusing on proximities ( O’Neill et al. 1988) y log eco adjacent to COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 7. Some solutions ... • Markov Random Field ( Maitre et al. 1994, 2000) is l ys a na e ag Im of topological pattern is l ys • “geo-discriminant” analysis ( Claramunt, 2005 Li and Claramunt 2006) a na l ica ph g ra eo G within class i discriminant weights between i and other classes COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 8. airs • • • re of p • ctu • • stru • • weighting by topology, using topological distribution or both k> 2 or der s of nce urre co -occ • • • • • • • • COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 9. The co-occurrences at various orders, of attributes from the same or different processes, build multinomial distributions at the root of spatial organisation and interactions of processes according to: the collocation distance, and the order of collocation. Spatial entropy COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 10. COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 11. COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 12. an example Spatial entropy with increasing orders COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009 12/21
  • 13. Counting events a Spatio-Temporal “event” (i) a person of age i with social class level j, diagnosed for a certain disease k and living at location s (ii) a plant species i, on a soil class j, at location s with annual rainfall k (iii) a crime of type i, at time slot j, in a zone of wealth class k of location s (i) is multivariate on the persons (ii) is a collocation of different measurements (ii) is a mixture of both. COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 14. ways of counting co-occurrences geometrical aspects Attributes (univariate/ multivariate) COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 15. potential applications a Spatio-Temporal “event” (i) a person of age i with social class level j, diagnosed for a certain disease k and living at location s (ii) a plant species i, on a soil class j, at location s with annual rainfall k (iii) a crime of type i, at time slot j, in a zone of wealth class k of location s SOOk CaKOO looking for associations of vI, vJ , vK variables in their spatial co-occurrences, scale-effect interaction of variables spatial pattern, looking for list of variables most structuring the events SelSOOk COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 16. SOOk, SelSOOk and CAkOO SOOk analysis proposes to use plot the Spatial Entropy index against distance "hi hi hi" "ma ma ma" "wh hi hi" "wh ma ma“ 3.38% 2.23% 1.70% 1.41% "mi mi bl" "mi bl bl" "re mi bl" "wh mi bl" 0.0152% 0.0180% 0.0365% 0.0467% d=0.15 blackoak hickory maple misc redoak whiteoak Hsu=0.893 7% 27% 23% 7% 16% 20% COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 17. Age 1 131 3 5111353 333113 5 1531 3111135 53 51511353 31 1 5 5 51 351 31 311 13 3 3115 15 55 5131351 3 15333 351 3 15 1 5 3 33 5 1 55 1 3 55351555 1 11311331 1 3 53 3331 3 5 3 1 5 1 51 5 3 1355 531 11111 33 5 55 551 5 31 1 1 3 13 3313 3 - + - not resistant 1 3 + resitant 1 1 113 35351 115335 51 315 5 1450 428 MRSA 31 5 3 13331133 3 13 5 13 5 1 1 355 1 13 51 3 5 35 3 51 53 5 55 33 11 3 - 31 35 15 5 3 1 5331 551 113 1 1 51 3 3 3353 33 3 11 5 15 31 1 11 3 53 55553113 3 31 1 1 133 31 5 3 151 3 5 5 1 3 1 313 1 - ----- - - +++ - - +- - -------- ---- +--+--+ +-- +-- - -+ 5 11 515 51 1 1133 53 5 315131 1 1 13315133 53 + -- - - - - --++ - + - - -+- -+ + ++ + -- 5 1 5 3 3113 5513 133 51 1 3 5 1 3 31 3 335 153 1353 5111111 3 ++-- + + -- - - - + -- - + - - - 3 3 3 1 53 3 3 5 315 5 1 155 133 31131 3513 3 1 33 53 1 5 1 5 3 - ++ - - - -- - - --- +--- - +-+ - 1 5 1 1 5 31 1 15 33 1 1 3 1 1 33 15131 - ++- + - - -- + - +- -- ++-- - + - -+ - 1 5 3 3 111 5 1 13 + - - + -+ + + - -+ - +-- - +- - 11 3 351 1 1 5 33 3 5 1 1 - - + -+ + - 5 55 5 51 51 1155 5 1 113 1 3 33511 1 3 3 35 35 51 3 3 5 1 13 3 3 3 1 - 33 3 5115 1 11553115 3 335313 3 3 3 133 35 5 5 5 33 3 3 5 3553 5 5 5 555 1 5 531 1 31 55 + 5 5 3 + ------- -- - - - + +- + -- --+-+ - --- +- +--- + 5351155 3 1 13155 151 1 53 11 33 53 - - --+ -+- + - + - ++- - - 35 351 53131533 551 13 5553 3 3 5 151 1 5 511335 -- -- --+-+-- -- - ----- -+- - - 3 1 5 11 51 3 353 1 1155 +--+ - --- - ------ --+ +- - -- - -+ - --- - - 55 3 1551 5 51 531 3 35 11111 1 5 35 5 3 3 33 3 3 1551 55 - -- + --- --+------ + - - - + - -- + - +- -+-- -- + - - --- --- -- - 3553531 3351 335 33 55 31 3 5 355 3 333 11 515 53 11335 5 1 1 1 13 113313513535555 11 5135 5 5 5 15 3 3333 626 + - +- 13531 51 5 3551 3 5 15311515 1355153 13 13135353 5 353 3 55 5 5 + - -+ -+---+ - -- ----- +------------ - + 3551 5 1 5 5 1 31 3 3 5511513153133113 351 5 3 5 3 5 15355 1 5 35151333 1335133 551 5 1 <45 - - + +- - ----- -- + + + - -+ +- +-- -+ -+-- - - -- + - + +- -- - - + - -+ - 1 3 111331135113511 5331 53315515555115 1 13 5 1 15 3 55 31 5 335315353 3 1 3 3 33 5 5353 5 15 5 15 13 33 3 5 3 45-75 616 - 5 111115 331131355553351 5 3 5 3 111 311513 333 5 3 15 553 3 +- - - + +--- + --------- + - - - - - + + + -+-+ - - -- + 551 5 3 3 155 1 53 5 1 1535 1 33 5 5 3 5 53 5 11333155313513 1 351133 3 51 115513151553 3335 1 3 155135 55 5 3 551 1 51351 5 5 3 5 553 1 5 5 + -- -+ - -- 5 3 35 53 5 3331 51531111 133 3 51 3 1 135351 1 13 3 5 >75 - +- - - -+-- - - -- - - - --- - - +-- + -- -- - 513 553 315 535 13 5 3311111511155331 3 13135551135315111 5 15 55 5 513 55 53 551131533353113111 353 1 1 1 133 333 53531 5551 13 3 3 31 3 31 5 55 5 1 3 51 13 5 15 3 3 1 1 636 - ++- - - - - - + - +-- 3 531 31 3 33 31 331 1 5 311 5 -- ------+++-+- -- ---- + - --------+-- +- - --- --- -- -+ + 11355 5 31531 3 3111331 3315 333 13 15 - + -- -+ - +-- - + +++ - - -- -- 33 15 - - -- -+- + - ------ ----- - - -- ---- +++-- +- -- ++ --- ----- +-+- -- -- + +-- +--- + --- -+ - ++--- - --- - + +--- - +-+--+ - - - +-- - ++ +----+- - +- - + - - - +- +- + -- + - -------+ --+ - - - -+---- - ------ +- -- +- -- - - - -+-+ --- -+- +- - --+- -- - - - -+ + - +---+----+-+------ - ---+------+ -+ - - - - + somewhere in UK -+------------- --- -----+-++ - - -+ - -- --- + --+ -+ - -- - +- - - + - - +-+ +- +-+-- - + - + + -- -+ +---- +++-+ - -+-+- - -- -- --- +- ++-+ +- - + - -+ --- -+ + -- - -+- - + + --+ +- - - - ++ - + -- --+ +----- --- + --------+-+--- -++- --- - -- ++ - - +- --- -+- -- -+-- ++---++- + -++ -+ -- + - + +-+ - - ++- --+ -- ++---- - - --- - - --- -- + --+ -+- --- - - -+ --- --- +- + --- -++-++-+-+- +- + - +- - - -+ - +-- ++ - + - - - - - - - - +-+---- ----- ---- --- --+- - ---- + -- -- - --- + ++ -++ -++-- -++ - - -+- -+ + --- - -+ -+ - --+-+- --++-- +-+- +---- - - + - - ---+- -- -+- +- - +- ----+--- ----- - -+ - +- - -++ ++ - + -1 -3 -5 +1 +3 +5 ----+-- --- - -- - --+++--+ --- - -- -- + + - 571 478 401 55 138 235 Epidemiological study Infectious disease dataset COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 18. SOOk, SelSOOk and CAkOO also Spatial Entropy of Self-co-occurrences = 0.6533133 d=2000 COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 19. SOOk, SelSOOk and CAkOO SOOk map of local Spatial entropies (d=2000) RSA.ppp - oo+ +o ooooo+o + oo ooooooo ooooooo o oooo o - - -- ooo +o o+ oooooo oooooo + oo+ oo + o o ooo o o o o oo o o o oo ooo+ oo oo o - oooooooo oooooooo o o oo oo o oo o o - oo ooo o - - O 0.888< HSu o o o o o o - o o + 0.7 < HSu < 0.888 +ooooo o oooo + ooo o oo ++ oo oo o o o - - oo o + ++oooooo + ++ ooo + + o +o oo o + + o oo o o o+ ++ oo o o+ +++ oooo +++ ++ - o + + oooo++ +++ o +++ + + o o o +++ + - HSu<= 0.7 - o o ooo++++ o++ + oo + o + - o o ooo++ o oo o o o+ o o ooo+++ ooo+oo oooo+++ + oo ooo oooo++ + + + - o oo ooooo+++ o o ooo o+ ++ o o+ + o oo o ++ + o o+ + ++ + - o oo o++++ ooo ++ ++ o + ++ o + + ++ o ++ + +++ o o +++ ++ o - - oo + + o+ + + o o + + + ++++++o oo+ +++o + ++++++ o + ++++++ oooo + ++++o++o + +++o+ o o ++o+ o oo + +o + oo o o + oo o o o o +oo+ ooo o o o o o + ooo oooooo oo oo ooo ooooo o oo oooooooo o oo o oo + + oo ooooo oo oooo oo o ++ + ++ ++ + ++ +o + oo ooo ++oo o o ooo oo + oo o + oo + +++++ ooooooooooooo +++++ooo ooooooo o+ +++ o o + ++++oo oooooo o oo +o + oo o o o +o o+ oooo o o+ o + o o + +o o o oo++ooooooo+oooo oo++ o + o++ooooooo ooooo oooo ++ oo +oooo oo oo o o oo+oooooooooooo o oo + o o oo + oo oo o o oooo+ooooooooooo oooo o+ + ooooooooo o oooo o o oo o oooo oo + ooo + o ooooooooooo ooo +oo oo ooo++o ooo + o oo o + ++ o oo oooo+ o ooo o+ o o ooo o oo oo oooooooo++o+ ooo o+ o o oo + o o+ ooo + +o o o + ++oooo + ooo o oo o o ++ooooo+++ooooooo + +++ o+++ oo ooo oo ++oooo++o++oooooo + o + ++ o o o + o oo+o ++ ooo +oooo++ ++o oooo o o+++ ++ oo o++o + + oo o+ +o++o+ oo++ + +o++++ oo + o o oo+ COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 20. Liti, north of Thessaloniki plant OPEN. plant LOW. plant HIGH. Ecological study – semi-natural. plant community data plant TREE. plant S.T. plant PATCH Transect dataset plant community and vegetation indices plant TEX plant SLOPE plant ASP fuzzy clustering on Transect data COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 21. SOOk, SelSOOk and CAkOO SelSOOk analysis proposes to use the Spatial Entropy in a PEGASE (CART) like Regression Tree COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 22. SOOk, SelSOOk and CAkOO CA2OO and CAkOO methods • based on Correspondence Analysis (order 2) • k-way table (order>2) using PTAk (R package) COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009
  • 23. CAkOO d=0.1 Lansing data COSIT’09 l’Aber Wrac'h, France, 21-25 September 2009

Notas del editor

  1. Horizontal and top: 6 &lt;&gt; (independently of + - a b) “ showing an age disparity for the over 85: less than expected in the reds and a little association in the blue area” Vertical and left: 2 3 &lt;&gt; 4 (5) “ the isolated class 4 (65-75) opposed to not much of them but 3s (45-65) in the right blue blob”
  2. Horizontal and top : +b &lt;&gt;+a in blue collocating more with +b “ More co-occurrences than expected, of cases resistant to methicillin with later contagion (rather than earlier +a) in the top left corner” Vertical ad left : -a &lt;&gt; +a (+b) in early – “ … but also rather with earlier resitants cases (+a) rather than just sensitives with earlier contagion”
  3. vs222 +b and not 6 opposed to +a top left corner “ More than expected collocations of + with late contagion in top left corner, not collocating with age 6 (over 85)” Vertical and left: “isolated points