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Fossil Insect Collaborative
Digitization Project
DM Smith, SH Butts, A Dooley, MS Engel, BD Farrell, DA
Grimaldi, S Heads, T Karim, CA Norris
Fossilinsects.colorado.edu
Research Goals
 The fossil insect data are of great importance to
understanding insect response to environmental
change and patterns of biodiversity through time.
 These fossils can aid in phylogenetic
reconstruction, examinations of the evolution of
morphological characteristics and in studies of
overall patterns of diversification in deep time.
Project Goals
The Fossil Insect Collaborative will make
available all the major collections of fossil
insect specimens in the United States by
creating electronic specimen records
consisting of digital images and associated
collection data.
Pensoft.org

amnh.org

Partners - PIs
American Museum of Natural History – David Grimaldi
CU Museum of Natural History – Dena Smith & Talia Karim
Illinois Natural History Survey - Sam Heads
Museum of Comparative Zoology – Harvard – Brian Farrell
University of Kansas Biodiversity Institute – Michael Engel
Virginia Museum of Natural History – Alton Dooley
Yale Peabody Museum of Natural History - Susan Butts and
Chris Norris
Collaborating Institutions
Florissant Fossil Beds N.M. – Herbert Meyer

National Museum of Natural History - Smithsonian
–Kathy Hollis, Finnegan Marsh, Conrad Labandeira
Fossil Insect Collaborative
~500,000 fossil insect specimens, images and
associated metadata
Funded through NSF – Advancing the Digitization of
Biological Collections
Project Duration: 4 Year Project
Start Date: July 15th, 2013
Amount funded: ~2.3 million (overall)
Digitization Goals
# of specimens to be
databased

# of Specimens to be
imaged

American Museum of Natural
History
Harvard Museum of Comparative
Zoology
Illinois Natural History Survey

46,500*

20,000

Total Number of Digital Fossil
Insect Specimen Records
by end of project
60,000

30,443

15,000

59,854

10,000

5,000

10,000

University of Colorado at Boulder

74,649

25,000

100,000

University of Kansas Biodiversity
Institute
Virginia Museum of Natural
History

5,625

4,000

6,000

8,455

8,910

8,910

Yale Peabody Museum

1,558

8,343

8,343

N/A

N/A

224,000

N/A

N/A

2,163

175,672

76,253

479,270

Institution

National Museum of Natural
History**
Florissant Fossil Beds National
Monument***

Total
iDigPaleo - Hub
iDigPaleo will be used to aggregate specimen
data and low resolution images from
collaborators and then to serve these data to
the National Hub at iDigBio (www.idigbio.org)
and the Paleontology Portal
(www.paleoportal.org).
iDig Paleo - Hub
The model will be implemented for use with the
open-source MySQL relational database
system.
A novel feature of iDigPaleo will be the
incorporation of social networking tools to
enable users to interact directly with the project
dataset for a wide variety of purposes.
Future Partners
PENs
Burke Museum – University of Washington
Field Museum – Chicago
Milwaukee Public Museum
UC Berkeley
DMNS
Cross - TCN Collaborations
Southwest Collections of Arthropods Network
Tri-Trophic Interactions TCN
PaleoNiches TCN
iDig Paleo - Hub
Central resource to interact with bio and geo
cyberinfrastructure initiatives.
Broader Impacts
 Development of mobile apps and modules (NGSS)
 Testing of activiites in EVOLUTIONs after school
program at Yale-Peabody
 SHRMP (Science High School Research Mentoring
Program) at AMNH
fossilinsects.colorado.edu

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Dm smith ecn2013

  • 1. Fossil Insect Collaborative Digitization Project DM Smith, SH Butts, A Dooley, MS Engel, BD Farrell, DA Grimaldi, S Heads, T Karim, CA Norris Fossilinsects.colorado.edu
  • 2.
  • 3. Research Goals  The fossil insect data are of great importance to understanding insect response to environmental change and patterns of biodiversity through time.  These fossils can aid in phylogenetic reconstruction, examinations of the evolution of morphological characteristics and in studies of overall patterns of diversification in deep time.
  • 4. Project Goals The Fossil Insect Collaborative will make available all the major collections of fossil insect specimens in the United States by creating electronic specimen records consisting of digital images and associated collection data.
  • 5. Pensoft.org amnh.org Partners - PIs American Museum of Natural History – David Grimaldi CU Museum of Natural History – Dena Smith & Talia Karim Illinois Natural History Survey - Sam Heads Museum of Comparative Zoology – Harvard – Brian Farrell University of Kansas Biodiversity Institute – Michael Engel Virginia Museum of Natural History – Alton Dooley Yale Peabody Museum of Natural History - Susan Butts and Chris Norris
  • 6. Collaborating Institutions Florissant Fossil Beds N.M. – Herbert Meyer National Museum of Natural History - Smithsonian –Kathy Hollis, Finnegan Marsh, Conrad Labandeira
  • 7. Fossil Insect Collaborative ~500,000 fossil insect specimens, images and associated metadata Funded through NSF – Advancing the Digitization of Biological Collections Project Duration: 4 Year Project Start Date: July 15th, 2013 Amount funded: ~2.3 million (overall)
  • 8. Digitization Goals # of specimens to be databased # of Specimens to be imaged American Museum of Natural History Harvard Museum of Comparative Zoology Illinois Natural History Survey 46,500* 20,000 Total Number of Digital Fossil Insect Specimen Records by end of project 60,000 30,443 15,000 59,854 10,000 5,000 10,000 University of Colorado at Boulder 74,649 25,000 100,000 University of Kansas Biodiversity Institute Virginia Museum of Natural History 5,625 4,000 6,000 8,455 8,910 8,910 Yale Peabody Museum 1,558 8,343 8,343 N/A N/A 224,000 N/A N/A 2,163 175,672 76,253 479,270 Institution National Museum of Natural History** Florissant Fossil Beds National Monument*** Total
  • 9. iDigPaleo - Hub iDigPaleo will be used to aggregate specimen data and low resolution images from collaborators and then to serve these data to the National Hub at iDigBio (www.idigbio.org) and the Paleontology Portal (www.paleoportal.org).
  • 10. iDig Paleo - Hub The model will be implemented for use with the open-source MySQL relational database system. A novel feature of iDigPaleo will be the incorporation of social networking tools to enable users to interact directly with the project dataset for a wide variety of purposes.
  • 11.
  • 12. Future Partners PENs Burke Museum – University of Washington Field Museum – Chicago Milwaukee Public Museum UC Berkeley DMNS Cross - TCN Collaborations Southwest Collections of Arthropods Network Tri-Trophic Interactions TCN PaleoNiches TCN
  • 13. iDig Paleo - Hub Central resource to interact with bio and geo cyberinfrastructure initiatives.
  • 14. Broader Impacts  Development of mobile apps and modules (NGSS)  Testing of activiites in EVOLUTIONs after school program at Yale-Peabody  SHRMP (Science High School Research Mentoring Program) at AMNH

Notas del editor

  1. Rich fossil history – over 420 million years.Abundant, diverse, range of morphologies and ecologiesRange of preservational formsOnly known through species descriptions. Many remain unpublished, in museum collections. Dark Data
  2. And you?
  3. And you?
  4. And you?NSF ADBC – Due November 13th