Quline

Applications of simulation tools ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Steps to run QuLine Breeding strategies GE system Population Input information about the GxE system and populations QUGENE QuLine *. fit *. var *. fre *. ham *. cro *. his *. rog *.pou *. fix Major outputs from QuLine Crosses after selection Genetic advance Genes fixed Gene frequency Selection history Hamming distance Population details Cross details Variance components

Software available from QuGene website www.uq.edu.au/lcafs/qugene

Steps in running simulation ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Two examples ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Example 1: Cross-prediction and Gene pyramiding Gene-Environment System ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Example 1: Cross-prediction and Gene pyramiding Starting population ,[object Object],[object Object]

Example 1: Cross-prediction and Gene pyramiding Breeding program definition ,[object Object]

Example 1: Cross-prediction and Gene pyramiding Run selection strategies

Example 1: Cross-prediction and Gene pyramiding Compare strategies for different haplotypes

Example 2 Combining QTL GenStat QTL analysis: Six yield QTL in eight Env

Getting data into simulation ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Example 2: Combining QTL FlapJack input files ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Example 2: Combining QTL FlapJack input files ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Example 2: Combining QTL Import data into FlapJack

Example 2: Combining QTL Flapjack - Chromosome + QTL view

Loading data from Flapjack formats

Summary of Gene-Environment System - environments

Summary of Gene-Environment System - Trait heritability

Summary of Gene-Environment System - genome view

Summary of Gene-Environment System - flanking markers

Run Qu-Gene engine to build files for simulation

Program view of Breeding module Load or create new breeding program ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],automated description of breeding program toolbox to load or create new files

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Yield of 50 F8 lines derived from 1000 F2s Selection for yield vs F2 selection for 2 QTL

Yield of 50 F8 lines derived from 1000 F2s Linkage drag in Chromosome 1

Opportunities ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Simulation applications for QTL ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Future ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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