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Metabolism
Chapter 5
Why Study Metabolism?
• Classification of bacteria
– Oxygen Tolerance
– Biochemical reactions
• Acids, Ammonia, Gases
• Fermentation Products
– Food Products
• Yogurt, Sour Cream, Bread, Alcohol
– Commercial Products
• Citric Acid, Plastics
• Environmental Cleanup
Chapter 5
Ying & Yang of Metabolism
• Metabolism = Anabolism + Catabolism
• Photosynthesis requires Respiration
• Respiration requires Photosynthesis
• Energy Production = Energy
Consumption
Chapter 5
Breakdown
Proteins to Amino Acids, Starch to Glucose
Synthesis
Amino Acids to Proteins, Glucose to Starch
Chapter 5
Chapter 5
Chapter 5
Overview of Metabolism
• Source of Energy (Photo- vs.
Chemotroph)
– Source of Electrons
– Carrier of Electrons
– Final Electron Acceptor
• Source of Carbon (Auto- vs.
Heterotroph)
– Auto- : Carbon Dioxide
– Hetero- : Organic Compounds
Chapter 5
Classification based on Metabolism
• Where microbes get their energy?
– Sunlight vs. Chemical
– Photo- vs. Chemo- trophs
• How do they obtain carbon?
– Carbon Dioxide (or inorganic cmpds.) vs.
Organic Compounds (sugars, amino acids)
– Auto- vs. Hetero- trophs
• Examples
– Photoautotrophs vs. Photoheterotrophs
– Chemoautotrophs vs. Chemoheterotrophs
Chapter 5
Chapter 5
Chapter 5
Types of -trophs
Type Energy C source Example
Photoauto- Sun CO2 Purple &
Green sulfur
bacteria
Photohetero- Sun Organic
Compounds
Purple &
Green Non-
sulfur bacteria
Chemoauto- Chemical
bonds
CO2 H, S, Fe, N
bacteria
Chemohetero- Chemical
bonds
Organic
Compounds
Most bacteria,
fungi,
protozoa,
animals
Chapter 5
Source of Electrons
• Autotrophs
– Photosynthesis
– H2O, H2S
• Chemotrophs
– Organic Compounds
– Carbohydrates (C H2O)
• Glucose, Lactose, Sucrose, Mannitol, Citrate
– Amino Acids
Chapter 5
Electron Carriers
• Photosynthesis
– NADP + H to NADPH
• Respiration
– NAD + H to NADH
– FAD + H to FADH
• Contain Niacin and Riboflavin
– Vitamins, not stable
– Can’t store these molecules
Chapter 5
Final Electron Acceptor
• Photosynthesis
– CO2 + H’s to CH2O
– Stores energy
• Respiration
– Aerobic
• 1/2 O2 + H 2 to H2O
– Anaerobic
• Fermentation
Chapter 5
Movement of Electrons
• Chemical reactions
• Oxidation Reactions
• Reduction Reactions
• Reactions Coupled
– Redox reactions
Chapter 5
Chapter 5
Example of Redox Equations
Chapter 5
Example of Redox Equations
Chapter 5
Example of Redox Equations
Chapter 5
Examples
• ATP  ADP + P
– Oxidation, release energy
• ADP + P  ATP
– Reduction, stores energy
• NAD + H  NADH
• FADH  FAD + H
• NH4 + 11/
2O2 NO2
-
+H2O + 2H + ATP
• 2H2 + O2  2H2 O
Chapter 5
Examples
• Cellular Respiration
– C6H12 O6 + 6O2 6H2O + 6CO2 + 38 ATP
• Photosynthesis
– 6H2O + 6CO2 + light  C6H12 O6 + 6O2
• Nitrification
– NH4  NO2 to NO3
• Ammonia to Nitrite to Nitrate
• Ammonification
– N2  NH4
Chapter 5
Respiration
• Overview;
– Glucose to Carbon dioxide + Water
+Energy
– C6H12O6 + O2  6CO2 + 6H2O + 38 ATP
– Glucose is highly reduced; contains energy
– Oxygen receives the electrons to form
energy
• 4 separate reactions
– Glycolysis, Transition Reaction, Krebs
Cycle, Electron Transport, Chemiosomosis
• Requires Oxygen
Chapter 5
Steps in Respiration
• Electron Donors
– Organic Compounds (Glucose preferred)
• Electron Carriers
– NAD to NADH
– FAD to FADH
• Electron Acceptors-Terminal
– O2 to H2O
• Phosphorylation Reactions
– ADP to ATP
• Chemiosmosis Reactions
Chapter 5
Glycolysis- 10 steps
• Glucose is Phosphorylated to form
Fructose 1,6-diphosphate
• Split to form 2 Glyceraldehyde 3-
phosphate
• Final Products are:
– 2 Pyruvic Acid (C3H4O3)
• Compare to original glucose - C6H12O6
– 2 NADH
– 2 ATP
Chapter 5
Chapter 5
Transition Reaction
• Pyruvic Acid  Acetyl - Co A + CO2 +
NADH
• C2H4O2
Chapter 5
Kreb’s Cycle
• Figure E.3, A29
• Acetyl CoA  Carbon Dioxide
– C2H4O2 to CO2
– Energy produced/Acetyl CoA (x2 for
/Glucose)
• 3 NADH
• 1 FADH
• 1 ATP
• Metabolic Wheel
– Fats, amino acids, etc. enter or leave
– Citrate is product of first reaction
Chapter 5
Electron Transport Chain
• NADH oxidized to NAD
• FAD reduced to FADH
• Cytochromes shuffle electrons finally to
O2
– Cytochrome Oxidase important in G - ID
• H2O formed and ATP
• 3 ATP / 1 NADH
• 2 ATP / 1 FADH
Chapter 5
Chapter 5
Chapter 5
Chapter 5
Chapter 5
Fermentation Products from
Pyruvate• Homolactic = Lactic Acid
– Yogurt, Lactobacillus
• Alcohol + CO2
• Propionic Acid
• Butyric Acid
• Acetic Acid
• Succinic Acid
• Butylene to Acetoin
– basis for VP Test (Vogues-Proskauer)
Chapter 5
Fermentation Products
• Alcohol and Carbon Dioxide
– Yeast mostly
• Lactic Acid
– Humans, muscles without oxygen
– Bacteria (Lactobacillus-yogurt)
• Butyric Acid
– Rancid butter, Clostridium-gangrene
• Acetoin
– Butanediol fermentation in Klebsiella
• Propionic Acid
– Swiss Cheese
Chapter 5
Fermentation in Yeast
Chapter 5
Fermentation in Muscle
Chapter 5
Chapter 5
Chapter 5
Photosynthesis
• Plants
– CO2 + H2O + Light  C6H12O6 + O2
– Water is split to release electrons
• Bacteria
– H2S is used not water
• Sulfur or Sulfuric Acid formed
• Oxygen not released
– Chlorophyll is different
– Strict Anaerobe
– Purple & Green Sulfur Bacteria
Chemiosmosis
• Production of ATP in Electron Transport
• Electrochemical Gradient Formed
between membranes
• H+ (Protons) generated from NADH
• Electrical Force (+) & pH Force (Acid)
• Gradient formed
• ATPase enzyme that channels H+ from
High to Low concentration
– 3 ATP/NADH
– 2 ATP/NADH
Chapter 5
Chapter 5
Summary of Respiration
• Aerobic Respiration
– Glycolysis
– Transition Rx.
– Kreb’s Cycle
– Electron Transport
Chain
• Anaerobic
Respiration
– Pyruvate 
• Lactic Acid
• Mixed Acids
• Alcohol + CO2
– Recycle NADH
– 2 ATP / Glucose
Chapter 5

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Metabolism in Fungi

  • 2. Chapter 5 Why Study Metabolism? • Classification of bacteria – Oxygen Tolerance – Biochemical reactions • Acids, Ammonia, Gases • Fermentation Products – Food Products • Yogurt, Sour Cream, Bread, Alcohol – Commercial Products • Citric Acid, Plastics • Environmental Cleanup
  • 3. Chapter 5 Ying & Yang of Metabolism • Metabolism = Anabolism + Catabolism • Photosynthesis requires Respiration • Respiration requires Photosynthesis • Energy Production = Energy Consumption
  • 4. Chapter 5 Breakdown Proteins to Amino Acids, Starch to Glucose Synthesis Amino Acids to Proteins, Glucose to Starch
  • 7. Chapter 5 Overview of Metabolism • Source of Energy (Photo- vs. Chemotroph) – Source of Electrons – Carrier of Electrons – Final Electron Acceptor • Source of Carbon (Auto- vs. Heterotroph) – Auto- : Carbon Dioxide – Hetero- : Organic Compounds
  • 8. Chapter 5 Classification based on Metabolism • Where microbes get their energy? – Sunlight vs. Chemical – Photo- vs. Chemo- trophs • How do they obtain carbon? – Carbon Dioxide (or inorganic cmpds.) vs. Organic Compounds (sugars, amino acids) – Auto- vs. Hetero- trophs • Examples – Photoautotrophs vs. Photoheterotrophs – Chemoautotrophs vs. Chemoheterotrophs
  • 11. Chapter 5 Types of -trophs Type Energy C source Example Photoauto- Sun CO2 Purple & Green sulfur bacteria Photohetero- Sun Organic Compounds Purple & Green Non- sulfur bacteria Chemoauto- Chemical bonds CO2 H, S, Fe, N bacteria Chemohetero- Chemical bonds Organic Compounds Most bacteria, fungi, protozoa, animals
  • 12. Chapter 5 Source of Electrons • Autotrophs – Photosynthesis – H2O, H2S • Chemotrophs – Organic Compounds – Carbohydrates (C H2O) • Glucose, Lactose, Sucrose, Mannitol, Citrate – Amino Acids
  • 13. Chapter 5 Electron Carriers • Photosynthesis – NADP + H to NADPH • Respiration – NAD + H to NADH – FAD + H to FADH • Contain Niacin and Riboflavin – Vitamins, not stable – Can’t store these molecules
  • 14. Chapter 5 Final Electron Acceptor • Photosynthesis – CO2 + H’s to CH2O – Stores energy • Respiration – Aerobic • 1/2 O2 + H 2 to H2O – Anaerobic • Fermentation
  • 15. Chapter 5 Movement of Electrons • Chemical reactions • Oxidation Reactions • Reduction Reactions • Reactions Coupled – Redox reactions
  • 17. Chapter 5 Example of Redox Equations
  • 18. Chapter 5 Example of Redox Equations
  • 19. Chapter 5 Example of Redox Equations
  • 20. Chapter 5 Examples • ATP  ADP + P – Oxidation, release energy • ADP + P  ATP – Reduction, stores energy • NAD + H  NADH • FADH  FAD + H • NH4 + 11/ 2O2 NO2 - +H2O + 2H + ATP • 2H2 + O2  2H2 O
  • 21. Chapter 5 Examples • Cellular Respiration – C6H12 O6 + 6O2 6H2O + 6CO2 + 38 ATP • Photosynthesis – 6H2O + 6CO2 + light  C6H12 O6 + 6O2 • Nitrification – NH4  NO2 to NO3 • Ammonia to Nitrite to Nitrate • Ammonification – N2  NH4
  • 22. Chapter 5 Respiration • Overview; – Glucose to Carbon dioxide + Water +Energy – C6H12O6 + O2  6CO2 + 6H2O + 38 ATP – Glucose is highly reduced; contains energy – Oxygen receives the electrons to form energy • 4 separate reactions – Glycolysis, Transition Reaction, Krebs Cycle, Electron Transport, Chemiosomosis • Requires Oxygen
  • 23. Chapter 5 Steps in Respiration • Electron Donors – Organic Compounds (Glucose preferred) • Electron Carriers – NAD to NADH – FAD to FADH • Electron Acceptors-Terminal – O2 to H2O • Phosphorylation Reactions – ADP to ATP • Chemiosmosis Reactions
  • 24. Chapter 5 Glycolysis- 10 steps • Glucose is Phosphorylated to form Fructose 1,6-diphosphate • Split to form 2 Glyceraldehyde 3- phosphate • Final Products are: – 2 Pyruvic Acid (C3H4O3) • Compare to original glucose - C6H12O6 – 2 NADH – 2 ATP
  • 26. Chapter 5 Transition Reaction • Pyruvic Acid  Acetyl - Co A + CO2 + NADH • C2H4O2
  • 27. Chapter 5 Kreb’s Cycle • Figure E.3, A29 • Acetyl CoA  Carbon Dioxide – C2H4O2 to CO2 – Energy produced/Acetyl CoA (x2 for /Glucose) • 3 NADH • 1 FADH • 1 ATP • Metabolic Wheel – Fats, amino acids, etc. enter or leave – Citrate is product of first reaction
  • 28. Chapter 5 Electron Transport Chain • NADH oxidized to NAD • FAD reduced to FADH • Cytochromes shuffle electrons finally to O2 – Cytochrome Oxidase important in G - ID • H2O formed and ATP • 3 ATP / 1 NADH • 2 ATP / 1 FADH
  • 33. Chapter 5 Fermentation Products from Pyruvate• Homolactic = Lactic Acid – Yogurt, Lactobacillus • Alcohol + CO2 • Propionic Acid • Butyric Acid • Acetic Acid • Succinic Acid • Butylene to Acetoin – basis for VP Test (Vogues-Proskauer)
  • 34. Chapter 5 Fermentation Products • Alcohol and Carbon Dioxide – Yeast mostly • Lactic Acid – Humans, muscles without oxygen – Bacteria (Lactobacillus-yogurt) • Butyric Acid – Rancid butter, Clostridium-gangrene • Acetoin – Butanediol fermentation in Klebsiella • Propionic Acid – Swiss Cheese
  • 39. Chapter 5 Photosynthesis • Plants – CO2 + H2O + Light  C6H12O6 + O2 – Water is split to release electrons • Bacteria – H2S is used not water • Sulfur or Sulfuric Acid formed • Oxygen not released – Chlorophyll is different – Strict Anaerobe – Purple & Green Sulfur Bacteria
  • 40. Chemiosmosis • Production of ATP in Electron Transport • Electrochemical Gradient Formed between membranes • H+ (Protons) generated from NADH • Electrical Force (+) & pH Force (Acid) • Gradient formed • ATPase enzyme that channels H+ from High to Low concentration – 3 ATP/NADH – 2 ATP/NADH Chapter 5
  • 42. Summary of Respiration • Aerobic Respiration – Glycolysis – Transition Rx. – Kreb’s Cycle – Electron Transport Chain • Anaerobic Respiration – Pyruvate  • Lactic Acid • Mixed Acids • Alcohol + CO2 – Recycle NADH – 2 ATP / Glucose Chapter 5