Background bioinformatics

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Presented by Martin Norling at the African Swine Fever Diagnostics, Surveillance, Epidemiology and Control Workshop, Nairobi, Kenya, 20-21 July 2011

Tecnología

Background
Bioinformatics
Martin Norling
Nairobi, July 2011

Data Collection
* Novel sample collection system written
in Python
* Runs in Linux
* Available freely as Open Source
* Uses a GPS Dongle to get exact position
and time for every sample
* Stores collected data in a MySQL
database
* Can migrate all data to central LIMS

Database
* Implemented in MySQL
* Runs in a linux server at SLU
* Maintained in LabCollector,
(a commercial LIMS software)
slightly modified.
* Nightly database backups
* Data kept with complete metadata to
ensure the most value from sampling

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