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Discovery of novel CTL epitopes by peptide library screening of CTL lines
from Theileria parva immune animals
ABSTRACT
The parasite Theileria parva claims the life of
approximately 1 million cattle every year. Immune animals to the
parasite develop a lifelong immunity based on a cytotoxic T
lymphocyte (CTL) response with a strong immunodominance
restricted by the bovine leukocyte antigen (BoLA) class I
molecules. In our goal of developing a next-generation vaccine
against T. parva, we have undertaken to identify new CTL
inducing antigens that can be included in a recombinant vaccine.
A peptide library of 18-mer peptides overlapping by 12 amino
acids and covering 500 genes of the whole parasite genome was
synthesized; giving approximately 40,000 peptides aliquoted in
pools of 50 peptides. Genes were selected based on the presence
of a signal peptide, abundance, and divergence to the related
parasite T. annulata, as well as by a selection using
immunoinformatic tools predicting, by artificial neural network,
peptides binding with strong affinity to the BoLA class I molecules
present in cattle of Africa. A bank of ten CTL lines from cattle
immunized with the live parasite expressing different BoLA class I
specificities were screened by IFN- ELISpot assay. Among these
cells, four secreted IFN- in the presence of a different peptide
library pool. Peptides from these pools were synthesized and
positive individual 18-mer peptides were identified. Dissection of
the minimal epitope is underway using IFN- ELISpot, cytotoxicity
as well as peptide-BoLA class I flow cytometry assays. These
newly identified antigens will hopefully allow us to develop a
vaccine towards T. parva giving wide coverage in cattle
population with diverse BoLA class I molecules.
N. Svitek1, R. Saya1, E. Awino1, M. Nielsen2, N. MacHugh3, J.C. da Silva4, V. Nene1, and L. Steinaa1
1Vaccines Biosciences, International Livestock Research Institute, Nairobi, Kenya
2Centre for Biological Sequence Analysis, Technical University of Denmark, Copenhagen, Denmark
3The Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom
4The Institute for Genome Sciences, University of Maryland, Baltimore, USA
LIFE CYCLE OF T. PARVA
Sporozoite entry via
a “zippering” mechanism
Sporozoite attachment
to host lymphocyte
Mature schizont in
“transformed” lymphocyte
Merogony
Bos indicus
Syncerus caffer
Piroplasms in
red blood cells
Larvae & nymphs
acquire infection
Rhipicephalus appendiculatus
(a three-host tick)
Merozoites released by
host cell rupture
Zygote
Kinete
Gametes
Daughter host-cells
remain infected
Sporogony in
type III acinus
Bos taurus
Proliferation of
schizont-infected cells
Sporozoites released
during tick feeding
Infected
nymphal & adult ticks
Rb
Rb
Rb
Mz
Sz
Sz
Rb
CTL LINES FROM T. PARVAMuguga
IMMUNIZED ANIMALS
Theileria
parvaMuguga
Oxytetracycline
INFECTION & TREATMENT METHOD (ITM)
OF VACCINATION
Positive peptides (TpMuguga_04g00772):
TLTLQGHRMKVTNLKWNPG (D5.31)
HRMKVTNLKWNPTVDYALG (lD5.32)
Positive peptides (TpMuguga_01g01091 [Tp12]):
DTLDSNREQLLNQFYQLFG (E4.34)
REQLLNQFYQLFNTPVDQG (E4.35)
Cell line MHC Haplotype Epitope Screening
F100 (B) A10/KN104 N.A. Positive
BX64 (B) A10/KN104 N.A. Positive
BF091 A18/A11/A19 Tp1214-224 Negative
BB007 A18/? Tp1214-224 Negative
BF092 A18/A12 Tp1214-224 Positive
BK173 A14 Not reacting to Tp9 Negative
BA219 A18 Tp1214-224 Negative
BH055 A11/A15v Tp5214-224 Negative
BG042 A10/A12 Not reacting to Tp2 Negative
BW012(B) T7/? Tp7206-214 Positive
PARTNERS FUNDING
SUMMARY & PERSPECTIVE
1
2 3
A10
12%
A11
10%
A12
11%
A14/A15
31%A17
4%
A18
9%
A19
11%
A20
6%
A31
6%
Haplotype Frequency in Cattle
N=127
4
4 chromosomes
≈ 4,000 genes
Theileria
parvaMuguga
- Abundance
- Signal peptide
- Divergence to T. annulata
- Promiscuity to
BoLA class I molecules (NetMHCpan)
Selection of 500 genes  40,000 peptides
5
1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0
0
1
2
3
4
[p e p tid e ] (n M )
O.D.[450nm]
B in d e r 1
B in d e r 2
N o n -b in d e r 1
N o n -b in d e r 2
F100.1 TLTLQGHRMKVT
F100.2 LTLQGHRMKVTN
F100.3 TLQGHRMKVTNL
F100.4 LQGHRMKVTNLK
F100.5 QGHRMKVTNLKW
F100.6 GHRMKVTNLKWN
F100.7 HRMKVTNLKWNP
F100.8 RMKVTNLKWNPT
F100.9 MKVTNLKWNPTV
F100.10 KVTNLKWNPTVD
F100.11 VTNLKWNPTVDY
F100.12 TNLKWNPTVDYA
F100.13 NLKWNPTVDYAL
MHC CLASS I HAPLOTYPE FREQUENCIES
IN CATTLE
SELECTION OF PEPTIDES
M
e
d
iu
m
C
T
L
+
T
p
M
T
p
M
o
n
lyF
1
0
0
.1
F
1
0
0
.2
F
1
0
0
.3
F
1
0
0
.4
F
1
0
0
.5
F
1
0
0
.6
F
1
0
0
.7
F
1
0
0
.8
F
1
0
0
.9
F
1
0
0
.1
0
F
1
0
0
.1
1
F
1
0
0
.1
2
F
1
0
0
.1
3
T
p
1
e
p
ito
p
e
P
o
s
itiv
e
p
o
o
lD
5
.3
1D
5
.3
2
0
1 0 0
2 0 0
3 0 0
SpotFormingUnit(SFU)
M
e
d
iu
m
C
o
n
A
P
o
o
l
D
5
,
p
la
te
8
D
5
.3
1
D
5
.3
20
1 0 0
2 0 0
3 0 0
SpotFormingUnit(SFU)
NEW ANTIGEN IDENTIFIED WITH F100 CTL
6
POSITIVE PEPTIDES IDENTIFIED WITH BF092 CTL
IFN ELISpot Assay
IFN ELISpot Assay
7
8
M
e
d
iu
m
C
o
n
A
B
F
0
9
2
T
p
M
T
p
M
a
lo
n
e
T
p
1
e
p
ito
p
e
P
o
o
l
E
4
,
p
la
te
2
E
4
.3
3
E
4
.3
4
E
4
.3
5
E
4
.3
6
0
2 0 0
4 0 0
6 0 0
SpotFormingUnit(SFU)
IFN ELISpot Assay
- 4 new epitopes under identification;
- Restricting BoLA class I molecule need to be
identified;
- Minimal epitope sequence will be confirmed
by ELISpot, cytotoxicity assay as well as by:
A) BoLA class I monomer binding assay
B) peptide-BoLA class I tetramer staining of positive cells
Tetramer+
CD8+
The figure illustrates the different life cycle stages of the
parasite as it cycles through the mammalian and tick host.
Induction of a strong
CTL response
negative positive
Looking for the minimal epitope:
A20
Licensed for use under the Creative Commons Attribution 4.0 International Licence (May
2016)

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Discovery of novel CTL epitopes by peptide library screening of CTL lines from Theileria parva immune animals

  • 1. Discovery of novel CTL epitopes by peptide library screening of CTL lines from Theileria parva immune animals ABSTRACT The parasite Theileria parva claims the life of approximately 1 million cattle every year. Immune animals to the parasite develop a lifelong immunity based on a cytotoxic T lymphocyte (CTL) response with a strong immunodominance restricted by the bovine leukocyte antigen (BoLA) class I molecules. In our goal of developing a next-generation vaccine against T. parva, we have undertaken to identify new CTL inducing antigens that can be included in a recombinant vaccine. A peptide library of 18-mer peptides overlapping by 12 amino acids and covering 500 genes of the whole parasite genome was synthesized; giving approximately 40,000 peptides aliquoted in pools of 50 peptides. Genes were selected based on the presence of a signal peptide, abundance, and divergence to the related parasite T. annulata, as well as by a selection using immunoinformatic tools predicting, by artificial neural network, peptides binding with strong affinity to the BoLA class I molecules present in cattle of Africa. A bank of ten CTL lines from cattle immunized with the live parasite expressing different BoLA class I specificities were screened by IFN- ELISpot assay. Among these cells, four secreted IFN- in the presence of a different peptide library pool. Peptides from these pools were synthesized and positive individual 18-mer peptides were identified. Dissection of the minimal epitope is underway using IFN- ELISpot, cytotoxicity as well as peptide-BoLA class I flow cytometry assays. These newly identified antigens will hopefully allow us to develop a vaccine towards T. parva giving wide coverage in cattle population with diverse BoLA class I molecules. N. Svitek1, R. Saya1, E. Awino1, M. Nielsen2, N. MacHugh3, J.C. da Silva4, V. Nene1, and L. Steinaa1 1Vaccines Biosciences, International Livestock Research Institute, Nairobi, Kenya 2Centre for Biological Sequence Analysis, Technical University of Denmark, Copenhagen, Denmark 3The Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom 4The Institute for Genome Sciences, University of Maryland, Baltimore, USA LIFE CYCLE OF T. PARVA Sporozoite entry via a “zippering” mechanism Sporozoite attachment to host lymphocyte Mature schizont in “transformed” lymphocyte Merogony Bos indicus Syncerus caffer Piroplasms in red blood cells Larvae & nymphs acquire infection Rhipicephalus appendiculatus (a three-host tick) Merozoites released by host cell rupture Zygote Kinete Gametes Daughter host-cells remain infected Sporogony in type III acinus Bos taurus Proliferation of schizont-infected cells Sporozoites released during tick feeding Infected nymphal & adult ticks Rb Rb Rb Mz Sz Sz Rb CTL LINES FROM T. PARVAMuguga IMMUNIZED ANIMALS Theileria parvaMuguga Oxytetracycline INFECTION & TREATMENT METHOD (ITM) OF VACCINATION Positive peptides (TpMuguga_04g00772): TLTLQGHRMKVTNLKWNPG (D5.31) HRMKVTNLKWNPTVDYALG (lD5.32) Positive peptides (TpMuguga_01g01091 [Tp12]): DTLDSNREQLLNQFYQLFG (E4.34) REQLLNQFYQLFNTPVDQG (E4.35) Cell line MHC Haplotype Epitope Screening F100 (B) A10/KN104 N.A. Positive BX64 (B) A10/KN104 N.A. Positive BF091 A18/A11/A19 Tp1214-224 Negative BB007 A18/? Tp1214-224 Negative BF092 A18/A12 Tp1214-224 Positive BK173 A14 Not reacting to Tp9 Negative BA219 A18 Tp1214-224 Negative BH055 A11/A15v Tp5214-224 Negative BG042 A10/A12 Not reacting to Tp2 Negative BW012(B) T7/? Tp7206-214 Positive PARTNERS FUNDING SUMMARY & PERSPECTIVE 1 2 3 A10 12% A11 10% A12 11% A14/A15 31%A17 4% A18 9% A19 11% A20 6% A31 6% Haplotype Frequency in Cattle N=127 4 4 chromosomes ≈ 4,000 genes Theileria parvaMuguga - Abundance - Signal peptide - Divergence to T. annulata - Promiscuity to BoLA class I molecules (NetMHCpan) Selection of 500 genes  40,000 peptides 5 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 2 3 4 [p e p tid e ] (n M ) O.D.[450nm] B in d e r 1 B in d e r 2 N o n -b in d e r 1 N o n -b in d e r 2 F100.1 TLTLQGHRMKVT F100.2 LTLQGHRMKVTN F100.3 TLQGHRMKVTNL F100.4 LQGHRMKVTNLK F100.5 QGHRMKVTNLKW F100.6 GHRMKVTNLKWN F100.7 HRMKVTNLKWNP F100.8 RMKVTNLKWNPT F100.9 MKVTNLKWNPTV F100.10 KVTNLKWNPTVD F100.11 VTNLKWNPTVDY F100.12 TNLKWNPTVDYA F100.13 NLKWNPTVDYAL MHC CLASS I HAPLOTYPE FREQUENCIES IN CATTLE SELECTION OF PEPTIDES M e d iu m C T L + T p M T p M o n lyF 1 0 0 .1 F 1 0 0 .2 F 1 0 0 .3 F 1 0 0 .4 F 1 0 0 .5 F 1 0 0 .6 F 1 0 0 .7 F 1 0 0 .8 F 1 0 0 .9 F 1 0 0 .1 0 F 1 0 0 .1 1 F 1 0 0 .1 2 F 1 0 0 .1 3 T p 1 e p ito p e P o s itiv e p o o lD 5 .3 1D 5 .3 2 0 1 0 0 2 0 0 3 0 0 SpotFormingUnit(SFU) M e d iu m C o n A P o o l D 5 , p la te 8 D 5 .3 1 D 5 .3 20 1 0 0 2 0 0 3 0 0 SpotFormingUnit(SFU) NEW ANTIGEN IDENTIFIED WITH F100 CTL 6 POSITIVE PEPTIDES IDENTIFIED WITH BF092 CTL IFN ELISpot Assay IFN ELISpot Assay 7 8 M e d iu m C o n A B F 0 9 2 T p M T p M a lo n e T p 1 e p ito p e P o o l E 4 , p la te 2 E 4 .3 3 E 4 .3 4 E 4 .3 5 E 4 .3 6 0 2 0 0 4 0 0 6 0 0 SpotFormingUnit(SFU) IFN ELISpot Assay - 4 new epitopes under identification; - Restricting BoLA class I molecule need to be identified; - Minimal epitope sequence will be confirmed by ELISpot, cytotoxicity assay as well as by: A) BoLA class I monomer binding assay B) peptide-BoLA class I tetramer staining of positive cells Tetramer+ CD8+ The figure illustrates the different life cycle stages of the parasite as it cycles through the mammalian and tick host. Induction of a strong CTL response negative positive Looking for the minimal epitope: A20 Licensed for use under the Creative Commons Attribution 4.0 International Licence (May 2016)