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1
RNA (RIBONUCLEIC
ACID )
RNA is a
polymer of
ribonucleoti
des linked
together by
3’-5’
phosphodies
ter linkage
2
RNA VS DNA
3
4
DIFFERENCES BETWEEN RNA AND
DNA
S.No. RNA DNA
1) Single stranded mainly
except when self
complementary sequences
are there it forms a double
stranded structure (Hair
pin structure)
Double stranded (Except
for certain viral DNA s
which are single
stranded)
2) Ribose is the main sugar The sugar moiety is
deoxy ribose
3) Pyrimidine components
differ. Thymine is never
found(Except tRNA)
Thymine is always there
but uracil is never found
4) Being single stranded
structure- It does not
follow Chargaff’s rule
It does follow Chargaff's
rule. The total purine
content in a double
stranded DNA is always
equal to pyrimidine
5
DIFFERENCES BETWEEN RNA AND
DNA
S.No. RNA DNA
5) RNA can be easily
destroyed by alkalies to
cyclic diesters of mono
nucleotides.
DNA resists alkali action
due to the absence of
OH group at 2’ position
6) RNA is a relatively a
labile molecule,
undergoes easy and
spontaneous
degradation
DNA is a stable
molecule. The
spontaneous
degradation is very
slow. The genetic
information can be
stored for years
together without any
change.
7) Mainly cytoplasmic,
but also present in
nucleus (primary
transcript and small
Mainly found in
nucleus, extra nuclear
DNA is found in
mitochondria, and
6
DIFFERENCES BETWEEN RNA AND
DNA
S.No. RNA DNA
9) There are various types of
RNA – mRNA, r RNA, t
RNA, Sn RNA, Si
RNA, mi RNA and hn RNA.
These RNAs perform
different and specific
functions.
DNA is always of one type
and performs the
function of storage and
transfer of genetic
information.
10) No variable physiological
forms of RNA are found.
The different types of
RNA do not change their
forms
There are variable
forms of DNA (A to E
and Z)
11) RNA is synthesized from
DNA, it can not form
DNA(except by the action
of reverse transcriptase). It
can not duplicate (except
DNA can form DNA by
replication, it can also
form RNA by
transcription.
TYPES OF RNA
In all prokaryotic and eukaryotic
organisms, three main classes of RNA
molecules exist-
1) Messenger RNA(m RNA)
2) Transfer RNA (t RNA)
3)Ribosomal RNA (r RNA)
The other are –
o small nuclear RNA (SnRNA),
o micro RNA(mi RNA) and
o small interfering RNA(Si RNA) and
o heterogeneous nuclear RNA (hnRNA).
MESSENGER RNA (M-
RNA)
Comprises only 5% of the RNA in the
cell
Most heterogeneous in size and base
sequence
All members of the class function as
messengers carrying the information in
STRUCTURAL
CHARACTERISTICS OF M-
RNA
The 5’ terminal end is capped by 7-
methyl guanosine triphosphate cap.
The cap is involved in the
recognition of mRNA by the
translating machinery
It stabilizes m RNA by protecting it
from 5’ exonuclease
STRUCTURAL
CHARACTERISTICS OF M-
RNA(CONTD.)
The 3’end of most m-RNAs have a polymer
of Adenylate residues( 20-250)
 The tail prevents the attack by 3’
exonucleases
Histones and interferons do not contain poly
A tails
On both 5’ and 3’ end there are non coding
sequences which are not translated (NCS)
The intervening region between non coding
sequences present between 5’ and 3’ end is
called coding region. This region encodes for
STRUCTURAL
CHARACTERISTICS OF M-
RNA
5’ cap and 3’ tail impart stability to m RNA by
protecting from specific exo nucleases.
STRUCTURAL
CHARACTERISTICS OF M-
RNA(CONTD.)
The m- RNA molecules are formed with
the help of DNA template during the
process of transcription.
The sequence of nucleotides in m RNA is
complementary to the sequence of
nucleotides on template DNA.
The sequence carried on m -RNA is read in
the form of codons.
A codon is made up of 3 nucleotides
The m-RNA is formed after
processing of heterogeneous
nuclear RNA
HETEROGENEOUS
NUCLEAR RNA (HNRNA)
In mammalian nuclei ,hnRNA is the
immediate product of gene
transcription
The nuclear product is heterogeneous in
size (Variable) and is very large.
Molecular weight may be more than 107,
while the molecular weight of m RNA is
less than 2x 106
75 % of hnRNA is degraded in the
nucleus, only 25% is processed to
mature m RNA
Heterogeneous nuclear RNA (hnRNA)
Mature m –RNA is formed from primary transcript by capping,
tailing, splicing and base modification.
TRANSFER RNA (T-
RNA)
Transfer RNA are the smallest of three major
species of RNA molecules
They have 74-95 nucleotide residues
They are synthesized by the nuclear
processing of a precursor molecule
They transfer the amino acids from
cytoplasm to the protein synthesizing
machinery, hence the name t RNA.
They are easily soluble , hence called “Soluble
RNA or s RNA
They are also called Adapter molecules, since
they act as adapters for the translation of the
sequence of nucleotides of the m RNA in to
specific amino acids
There are at least 20 species of t RNA one
STRUCTURAL CHARACTERISTICS
OF T- RNA
1)Primary structure- The nucleotide
sequence of all the t RNA molecules allows
extensive intrastand complimentarity that
generates a secondary structure.
2)Secondary structure- Each single t- RNA
shows extensive internal base pairing and
acquires a clover leaf like structure. The
structure is stabilized by hydrogen
bonding between the bases and is a
consistent feature.
STRUCTURAL
CHARACTERISTICS OF T-
RNA
Secondary structure (Clover leaf
structure)
All t-RNA contain 5 main arms
or loops which are as follows-
a) Acceptor arm
b) Anticodon arm
c) D HU arm
d) TΨ C arm
e) Extra arm
SECONDARY STRUCTURE OF
T- RNA
The carboxyl group of amino acid is attached to 3’OH group of
Adenine nucleotide of the acceptor arm. The anticodon arm
base pairs with the codon present on the m- RNA
SECONDARY STRUCTURE OF
T- RNA
a)Acceptor arm
 The acceptor arm is at 3’ end
 It has 7 base pairs
 The end sequence is unpaired
 Cytosine, Cytosine-Adenine at the 3’
end
 The 3’ OH group terminal of Adenine
binds with carboxyl group of amino
acids
 The t RNA bound with amino acid
is called Amino acyl t RNA
 CCA attachment is done post
SECONDARY STRUCTURE OF T-
RNA(CONTD.)
b) Anticodon arm
Lies at the opposite end of acceptor arm
5 base pairs long
Recognizes the triplet codon present in
the m RNA
Base sequence of anticodon arm is
complementary to the base sequence of m
RNA codon.
Due to complimentarity it can bind
specifically with m RNA by hydrogen bonds.
SECONDARY STRUCTURE OF T-
RNA(CONTD.)
c) DHU arm
It has 3-4 base pairs
Serves as the recognition site for the
enzyme (amino acyl t RNA synthetase) that
adds the amino acid to the acceptor arm.
d) TΨC arm
This arm is opposite to DHU arm
Since it contains pseudo uridine that is
why it is so named
 It is involved in the binding of t RNA to the
ribosomes
SECONDARY STRUCTURE OF T-
RNA(CONTD.)
e) Extra arm or Variable arm
About 75 % of t RNA molecules possess a short extra arm
If about 3-5 base pairs are present the t-RNA is said to be
belonging to class 1. Majority t -RNA belong to class 1.
The t –RNA belonging to class 2 have long extra arm, 13-21
base pairs in length.
TERTIARY STRUCTURE OF
T- RNA
The L shaped tertiary
structure is formed by
further folding of the
clover leaf due to
hydrogen bonds
between T and D arms.
The base paired
double helical stems
get arranged in to two
double helical
columns, continuous
and perpendicular to
one another.
RIBOSOMAL RNA
(RRNA)
The mammalian ribosome contains two
major nucleoprotein subunits—a larger one
with a molecular weight of 2.8 x 106 (60S)
and a smaller subunit with a molecular
weight of 1.4 x 106 (40S).
The 60S subunit contains a 5S ribosomal RNA
(rRNA), a 5.8S rRNA, and a 28S rRNA; there are
also probably more than 50 specific
polypeptides.
The 40S subunit is smaller and contains a
single 18S rRNA and approximately 30
distinct polypeptide chains.
All of the ribosomal RNA molecules except
the 5S rRNA are processed from a single 45S
RIBOSOMAL RNA
(RRNA)
RIBOSOMAL RNA
(RRNA)
The functions of the ribosomal
RNA molecules in the ribosomal
particle are not fully understood,
but they are necessary for
ribosomal assembly and seem to
play key roles in the binding of
mRNA to ribosomes and its
translation
Recent studies suggest that an rRNA
component performs the peptidyl
transferase activity and thus is an
SMALL RNA
Most of these molecules are
complexed with proteins to form
ribonucleoproteins and are
distributed in the nucleus, in the
cytoplasm, or in both.
They range in size from 20 to
300 nucleotides and are present
in 100,000– 1,000,000 copies
per cell.
SMALL NUCLEAR RNAS
(SNRNAS)
snRNAs, a subset of the small RNAs,
are significantly involved in mRNA
processing and gene regulation
Of the several snRNAs, U1, U2, U4,
U5, and U6 are involved in intron
removal and the processing of
hnRNA into mRNA
The U7 snRNA is involved in
production of the correct 3' ends of
histone mRNA—which lacks a
SMALL NUCLEAR RNAS
(SNRNAS).
Sn RNA s are involved in the process of splicing (intron removal)
of primary transcript to form mature m RNA. The Sn RNA s form
complexes with proteins to form Ribonucleoprotein particles
called snRNPs
MICRO RNAS, MIRNAS, AND
SMALL INTERFERING
RNAS, SIRNAS
These two classes of RNAs
represent a subset of small RNAs;
both play important roles in gene
regulation.
miRNAs and siRNAs cause
inhibition of gene expression by
decreasing specific protein
production albeit apparently via
distinct mechanisms
MICRO RNAS
(MIRNAS)
miRNAs are typically 21–25
nucleotides in length and are
generated by nucleolytic processing
of the products of distinct
genes/transcription units
The small processed mature miRNAs
typically hybridize, via the formation
of imperfect RNA-RNA duplexes
within the 3'- untranslated regions of
specific target mRNAs, leading via
unknown mechanisms to translation
arrest.
SMALL INTERFERING RNAS
(SIRNAS)
siRNAs are derived by the specific nucleolytic
cleavage of larger, double-stranded RNAs to
again form small 21– 25 nucleotide-long
products.
These short siRNAs usually form perfect RNA-
RNA hybrids with their distinct targets
potentially anywhere within the length of the
mRNA where the complementary sequence
exists.
Formation of such RNA-RNA duplexes
between siRNA and mRNA results in reduced
specific protein production because the
siRNA-mRNA complexes are degraded by
dedicated nucleolytic machinery;

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Structure and function of RNA.pptx

  • 1. 1
  • 2. RNA (RIBONUCLEIC ACID ) RNA is a polymer of ribonucleoti des linked together by 3’-5’ phosphodies ter linkage 2
  • 4. 4 DIFFERENCES BETWEEN RNA AND DNA S.No. RNA DNA 1) Single stranded mainly except when self complementary sequences are there it forms a double stranded structure (Hair pin structure) Double stranded (Except for certain viral DNA s which are single stranded) 2) Ribose is the main sugar The sugar moiety is deoxy ribose 3) Pyrimidine components differ. Thymine is never found(Except tRNA) Thymine is always there but uracil is never found 4) Being single stranded structure- It does not follow Chargaff’s rule It does follow Chargaff's rule. The total purine content in a double stranded DNA is always equal to pyrimidine
  • 5. 5 DIFFERENCES BETWEEN RNA AND DNA S.No. RNA DNA 5) RNA can be easily destroyed by alkalies to cyclic diesters of mono nucleotides. DNA resists alkali action due to the absence of OH group at 2’ position 6) RNA is a relatively a labile molecule, undergoes easy and spontaneous degradation DNA is a stable molecule. The spontaneous degradation is very slow. The genetic information can be stored for years together without any change. 7) Mainly cytoplasmic, but also present in nucleus (primary transcript and small Mainly found in nucleus, extra nuclear DNA is found in mitochondria, and
  • 6. 6 DIFFERENCES BETWEEN RNA AND DNA S.No. RNA DNA 9) There are various types of RNA – mRNA, r RNA, t RNA, Sn RNA, Si RNA, mi RNA and hn RNA. These RNAs perform different and specific functions. DNA is always of one type and performs the function of storage and transfer of genetic information. 10) No variable physiological forms of RNA are found. The different types of RNA do not change their forms There are variable forms of DNA (A to E and Z) 11) RNA is synthesized from DNA, it can not form DNA(except by the action of reverse transcriptase). It can not duplicate (except DNA can form DNA by replication, it can also form RNA by transcription.
  • 7. TYPES OF RNA In all prokaryotic and eukaryotic organisms, three main classes of RNA molecules exist- 1) Messenger RNA(m RNA) 2) Transfer RNA (t RNA) 3)Ribosomal RNA (r RNA) The other are – o small nuclear RNA (SnRNA), o micro RNA(mi RNA) and o small interfering RNA(Si RNA) and o heterogeneous nuclear RNA (hnRNA).
  • 8. MESSENGER RNA (M- RNA) Comprises only 5% of the RNA in the cell Most heterogeneous in size and base sequence All members of the class function as messengers carrying the information in
  • 9. STRUCTURAL CHARACTERISTICS OF M- RNA The 5’ terminal end is capped by 7- methyl guanosine triphosphate cap. The cap is involved in the recognition of mRNA by the translating machinery It stabilizes m RNA by protecting it from 5’ exonuclease
  • 10. STRUCTURAL CHARACTERISTICS OF M- RNA(CONTD.) The 3’end of most m-RNAs have a polymer of Adenylate residues( 20-250)  The tail prevents the attack by 3’ exonucleases Histones and interferons do not contain poly A tails On both 5’ and 3’ end there are non coding sequences which are not translated (NCS) The intervening region between non coding sequences present between 5’ and 3’ end is called coding region. This region encodes for
  • 11. STRUCTURAL CHARACTERISTICS OF M- RNA 5’ cap and 3’ tail impart stability to m RNA by protecting from specific exo nucleases.
  • 12. STRUCTURAL CHARACTERISTICS OF M- RNA(CONTD.) The m- RNA molecules are formed with the help of DNA template during the process of transcription. The sequence of nucleotides in m RNA is complementary to the sequence of nucleotides on template DNA. The sequence carried on m -RNA is read in the form of codons. A codon is made up of 3 nucleotides The m-RNA is formed after processing of heterogeneous nuclear RNA
  • 13. HETEROGENEOUS NUCLEAR RNA (HNRNA) In mammalian nuclei ,hnRNA is the immediate product of gene transcription The nuclear product is heterogeneous in size (Variable) and is very large. Molecular weight may be more than 107, while the molecular weight of m RNA is less than 2x 106 75 % of hnRNA is degraded in the nucleus, only 25% is processed to mature m RNA
  • 14. Heterogeneous nuclear RNA (hnRNA) Mature m –RNA is formed from primary transcript by capping, tailing, splicing and base modification.
  • 15. TRANSFER RNA (T- RNA) Transfer RNA are the smallest of three major species of RNA molecules They have 74-95 nucleotide residues They are synthesized by the nuclear processing of a precursor molecule They transfer the amino acids from cytoplasm to the protein synthesizing machinery, hence the name t RNA. They are easily soluble , hence called “Soluble RNA or s RNA They are also called Adapter molecules, since they act as adapters for the translation of the sequence of nucleotides of the m RNA in to specific amino acids There are at least 20 species of t RNA one
  • 16. STRUCTURAL CHARACTERISTICS OF T- RNA 1)Primary structure- The nucleotide sequence of all the t RNA molecules allows extensive intrastand complimentarity that generates a secondary structure. 2)Secondary structure- Each single t- RNA shows extensive internal base pairing and acquires a clover leaf like structure. The structure is stabilized by hydrogen bonding between the bases and is a consistent feature.
  • 17. STRUCTURAL CHARACTERISTICS OF T- RNA Secondary structure (Clover leaf structure) All t-RNA contain 5 main arms or loops which are as follows- a) Acceptor arm b) Anticodon arm c) D HU arm d) TΨ C arm e) Extra arm
  • 18. SECONDARY STRUCTURE OF T- RNA The carboxyl group of amino acid is attached to 3’OH group of Adenine nucleotide of the acceptor arm. The anticodon arm base pairs with the codon present on the m- RNA
  • 19. SECONDARY STRUCTURE OF T- RNA a)Acceptor arm  The acceptor arm is at 3’ end  It has 7 base pairs  The end sequence is unpaired  Cytosine, Cytosine-Adenine at the 3’ end  The 3’ OH group terminal of Adenine binds with carboxyl group of amino acids  The t RNA bound with amino acid is called Amino acyl t RNA  CCA attachment is done post
  • 20. SECONDARY STRUCTURE OF T- RNA(CONTD.) b) Anticodon arm Lies at the opposite end of acceptor arm 5 base pairs long Recognizes the triplet codon present in the m RNA Base sequence of anticodon arm is complementary to the base sequence of m RNA codon. Due to complimentarity it can bind specifically with m RNA by hydrogen bonds.
  • 21. SECONDARY STRUCTURE OF T- RNA(CONTD.) c) DHU arm It has 3-4 base pairs Serves as the recognition site for the enzyme (amino acyl t RNA synthetase) that adds the amino acid to the acceptor arm. d) TΨC arm This arm is opposite to DHU arm Since it contains pseudo uridine that is why it is so named  It is involved in the binding of t RNA to the ribosomes
  • 22. SECONDARY STRUCTURE OF T- RNA(CONTD.) e) Extra arm or Variable arm About 75 % of t RNA molecules possess a short extra arm If about 3-5 base pairs are present the t-RNA is said to be belonging to class 1. Majority t -RNA belong to class 1. The t –RNA belonging to class 2 have long extra arm, 13-21 base pairs in length.
  • 23. TERTIARY STRUCTURE OF T- RNA The L shaped tertiary structure is formed by further folding of the clover leaf due to hydrogen bonds between T and D arms. The base paired double helical stems get arranged in to two double helical columns, continuous and perpendicular to one another.
  • 24. RIBOSOMAL RNA (RRNA) The mammalian ribosome contains two major nucleoprotein subunits—a larger one with a molecular weight of 2.8 x 106 (60S) and a smaller subunit with a molecular weight of 1.4 x 106 (40S). The 60S subunit contains a 5S ribosomal RNA (rRNA), a 5.8S rRNA, and a 28S rRNA; there are also probably more than 50 specific polypeptides. The 40S subunit is smaller and contains a single 18S rRNA and approximately 30 distinct polypeptide chains. All of the ribosomal RNA molecules except the 5S rRNA are processed from a single 45S
  • 26. RIBOSOMAL RNA (RRNA) The functions of the ribosomal RNA molecules in the ribosomal particle are not fully understood, but they are necessary for ribosomal assembly and seem to play key roles in the binding of mRNA to ribosomes and its translation Recent studies suggest that an rRNA component performs the peptidyl transferase activity and thus is an
  • 27. SMALL RNA Most of these molecules are complexed with proteins to form ribonucleoproteins and are distributed in the nucleus, in the cytoplasm, or in both. They range in size from 20 to 300 nucleotides and are present in 100,000– 1,000,000 copies per cell.
  • 28. SMALL NUCLEAR RNAS (SNRNAS) snRNAs, a subset of the small RNAs, are significantly involved in mRNA processing and gene regulation Of the several snRNAs, U1, U2, U4, U5, and U6 are involved in intron removal and the processing of hnRNA into mRNA The U7 snRNA is involved in production of the correct 3' ends of histone mRNA—which lacks a
  • 29. SMALL NUCLEAR RNAS (SNRNAS). Sn RNA s are involved in the process of splicing (intron removal) of primary transcript to form mature m RNA. The Sn RNA s form complexes with proteins to form Ribonucleoprotein particles called snRNPs
  • 30. MICRO RNAS, MIRNAS, AND SMALL INTERFERING RNAS, SIRNAS These two classes of RNAs represent a subset of small RNAs; both play important roles in gene regulation. miRNAs and siRNAs cause inhibition of gene expression by decreasing specific protein production albeit apparently via distinct mechanisms
  • 31. MICRO RNAS (MIRNAS) miRNAs are typically 21–25 nucleotides in length and are generated by nucleolytic processing of the products of distinct genes/transcription units The small processed mature miRNAs typically hybridize, via the formation of imperfect RNA-RNA duplexes within the 3'- untranslated regions of specific target mRNAs, leading via unknown mechanisms to translation arrest.
  • 32. SMALL INTERFERING RNAS (SIRNAS) siRNAs are derived by the specific nucleolytic cleavage of larger, double-stranded RNAs to again form small 21– 25 nucleotide-long products. These short siRNAs usually form perfect RNA- RNA hybrids with their distinct targets potentially anywhere within the length of the mRNA where the complementary sequence exists. Formation of such RNA-RNA duplexes between siRNA and mRNA results in reduced specific protein production because the siRNA-mRNA complexes are degraded by dedicated nucleolytic machinery;