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eROSA has received funding from the European
Union’s Horizon 2020 research and innovation
programme under grant agreement No 730988
..towards an e-infrastructure for open
science for agriculture and food
Different views on infrastructure definition and mapping methods
Johannes Keizer, for the eROSA team
2
Synthesis Paper on eInfrastructure
definitions
http://www.erosa.aginfra.eu/vision
http://www.erosa.aginfra.eu/vision
http://www.erosa.aginfra.eu/vision
http://www.erosa.aginfra.eu/vision
It is based on and useful for a Community
It needs a business model and governance
for sustainability
A technical backbone that easily can host a
variety of services
a variety of services, useful for the
community, interoperable, but not
necessarily connected or dependent from
each other
3
Infrastructure has various components
Communities of Practice
Technical Standards
Shared Semantic
Business Models
Research Facilities
Connectivity
Computing Power
Quite a Lot! And to see in
Detail
Region-Country-
City
Laws and
Regulations/
Taxes/Fees
Streets/Railways/
Electricity/Water
Factories/
Transport
/Shops/Services
Set of Services
Technical
Backbone
Governance
Business Model
Community
Differen views
Different Views
Horizon 2020 research and innovation programme - grant agreement No 730988
Montpellier Stakeholder workshop– 2017-07-06
The commissions view
▪ European Open Science Cloud
(EOSC)
▪ Integration and consolidation of e-
infrastructures
▪ Federation of existing research
infrastructures and scientific clouds
▪ Development of cloud-based
services for Open Science
▪ Connection of ESFRIs to the
EOSC
▪ European Data Infrastructure
(EDI)
▪ Development and deployment of
large-scale European HPC, data
and network infrastructure
6
Industry
Scientific
Users
Public Sector
European Open Science Cloud
European Data Infrastructure
Source: https://ec.europa.eu/digital-single-
market/en/%20european-cloud-initiative
RDA: Research
Data Alliance
And how it could be interpreted
7
EOSC
EDI
Stake-
holders
Citizens /
Communities
Farmers Associations
Networks
NGOs, etc
Public Sector
Food Agencies
Ministries
EU DGs, etc
Scientific Users
Universities
Research Centres, etc
Industry
Bayer
Syngenta, etc
IoF2020 GACS
Horizon 2020 research and innovation programme - grant agreement No 730988
Montpellier Stakeholder workshop– 2017-07-06
Resources and services : 1st approach
Iron and Wires
Data interoperability
http://vest.agrisemantics.org
http://agroportal.lirmm.fr/
http://gacs/agrisemantics.org/
Common
s!
Shared semantics
Data, discovery services
DCAN
Sustainable
and trusted
storage
CCAN
DataVerse
Call it
FAIR data
,
Virtual research environments
Data/Information Portals
Data publication, acess,
processing and analysis
https://data.gov.in/sector/agriculture
BioLink
Galaxy
Horizon 2020 research and innovation programme - grant agreement No 730988
Montpellier Stakeholder workshop– 2017-07-06
The 6 levels of “FAIRness”
Horizon 2020 research and innovation programme - grant agreement No 730988
Montpellier Stakeholder workshop– 2017-07-06
Mapping under e-ROSA
Provide a detailed, comprehensive overview of the current
landscape related to data science in agriculture
Identify main stakeholders and existing resources within the
e-ROSA scope that can support and benefit from the e-ROSA
community-building and roadmap elaboration process
Tell a story :
 Diversity of data types and resources to tackle the challenges of the
agri-food science
 Identify the gems : data, standards, services, expertise
 Help to identify our commons ….
Scientific Community
Organizations
Initiatives
Data Resources
Data Points
Facilities
What does eROSA seek to map?
Data Points
Organizations
Initiatives
Facilities
Definitions
all forms of data sources directly or indirectly
providing access to data in the field of
agriculture and food (“how to get data?”)
The organizations within the e-ROSA scope;
“data producers”, “data experts” , “data
policy”
Projects, networks and other initiatives within
the e-ROSA scope
research infrastructures and e-infrastructures
that provide one or several types of data
services (“what can you do with data?”)
Organization
Full Name
Description
Logo
URL
Address
Geographic Coordinates
Scientific Discipline(s)
Date Added/Approved
ID
Name of the Organization
Short description
Logo of the organization
URL
Physical/Postal Address
Latitude and Longitude of headquarters
Branch of scientific knowledge that the Organization works on
Date Added/Approved in eROSA
Unique Identifier of Organization
Acronym Short name of the Organization
Geographic Coverage Geographical area of the activities of the Organization
Impact Area(s)
Application areas for the scientific discipline(s) of Organization
(from GACS - Global Agricultural Concept Scheme)
Added by (eROSA Partner) The eROSA partner that added the specific record/entry
Initiative
Full Name
Description
Logo
URL
Related Organizations
Added by (eROSA Partner)
Name of the Initiative
Short Description of Initiative
Logo
Website
Relation to the Organization(s) within the initiative
The eROSA partner that added the specific record/entry
ID Unique Identifier of Initiative
Date Added Date Added in eROSA
Acronym Short name of the Organization
Geographic Coverage Geographical area of the activities of the Initiative
Address
Geographic Coordinates
Physical/Postal Address
Latitude and Longitude of headquarters
Scientific Discipline(s) Branch of scientific knowledge that the Initiative works on
Data Science Category(ies) Types of data services offered by the Initiative
Impact Area(s)
Application areas for the scientific discipline(s) of Initiative
(from GACS - Global Agricultural Concept Scheme)
Data Point
Full Name
Description
URL
Date Added
Geographic Coordinates
Type
ID
Name of Data Point
Description of Data Point
URL
Date Added in eROSA
Latitude and Longitude of location
Type of Data Point
Unique Identifier of Data Point
Logo Logo of the Data Point
Acronym Short name of the Data Point
Geographic Coverage Geographical area of the data within the Data Point
Address Physical/Postal Address
Access Policy Type of access to the data of the Data Point
Open
Controlled
Private
Set
Catalogue
Repository
Aggregator
Data Point
Impact Areas
Related Organization(s)
Application areas for the scientific discipline(s) of Data Point
(from GACS - Global Agricultural Concept Scheme)
Relation/Connection to any Organization(s)
Related Initiative(s) Relation/Connection to any Initiative(s)
Related Facilities(s) Relation/Connection to any Facilitie(s)
Added by (eROSA Partner) The eROSA partner that added the specific record/entry
Scientific Discipline(s) Branch of scientific knowledge that the Data Point concerns
Agriculture - General
Animal Production and Health
Economics and Policy
Education and Extension
Engineering, Technology and Research
Farming Practices and Systems
Forestry
General Arts and Humanities
Geographical and Regional Information
Government, Administration and Legislation
Information Management
Medicine
Fisheries and Aquaculture
Food safety and Human nutrition
Food Security
Natural Resources and Environment
Plant Production and Protection
Rural and Social Development
Organization
Full Name
Description
Logo
URL
Address
Geographic Coordinates
Scientific Discipline(s)
Date Added/Approved
ID
Name of the Organization
Short description
Logo of the organization
URL
Physical/Postal Address
Latitude and Longitude of headquarters
Branch of scientific knowledge that the Organization works on
Date Added/Approved in eROSA
Unique Identifier of Organization
Acronym Short name of the Organization
Geographic Coverage Geographical area of the activities of the Organization
Impact Area(s)
Application areas for the scientific discipline(s) of Organization
(from GACS - Global Agricultural Concept Scheme)
Added by (eROSA Partner) The eROSA partner that added the specific record/entry
Initiative
Full Name
Description
Logo
URL
Related Organizations
Added by (eROSA Partner)
Name of the Initiative
Short Description of Initiative
Logo
Website
Relation to the Organization(s) within the initiative
The eROSA partner that added the specific record/entry
ID Unique Identifier of Initiative
Date Added Date Added in eROSA
Acronym Short name of the Organization
Geographic Coverage Geographical area of the activities of the Initiative
Address
Geographic Coordinates
Physical/Postal Address
Latitude and Longitude of headquarters
Scientific Discipline(s) Branch of scientific knowledge that the Initiative works on
Data Science Category(ies) Types of data services offered by the Initiative
Impact Area(s)
Application areas for the scientific discipline(s) of Initiative
(from GACS - Global Agricultural Concept Scheme)
Facility
Full Name
Geographic Coverage
Date Added
Address
Geographic Coordinates
URL
Development Stage
Description
ID
Name of the Facility
Geographical area covered by the Facility
Date Added in eROSA
Physical/Postal Address
Latitude and Longitude of location
URL
Stage of Development for the Facility
Description of the Facility
Unique Identifier of Facility
Logo Logo of the Facility
Acronym Short name of the Facility
Project
Operational service
Access Policy Type of access to the Facility
Scientific Discipline(s) Branch of scientific knowledge that the Facility concerns
Facility
Type
Farm
Garden
Greenhouse
Laboratory
Land
Ranch
Research center/station
Education center
Virtual Lab
Type of Facility
e-Infrastructure
Field Station
Impact Areas
Related Organization(s)
Application areas for the scientific discipline(s) of Data Point
(from GACS - Global Agricultural Concept Scheme)
Relation/Connection to any Organization(s)
Related Initiative(s) Relation/Connection to any Initiative(s)
Network of research infrastructures
Added by (eROSA Partner) The eROSA partner that added the specific record/entry
Data Science Category(ies) Types of data services offered by the Facility
Data production
Data discovery & access Computation
Data visualisation
Data veracity
Data storage
Semantics
Technical data interoperability
Modelling, statistics & simulation
Workflows
Data ownership
Data publication
Data integration
Support for decision-making
Governance
http://www.aginfra.eu/discover
http://www.aginfra.eu
AgINFRA/e-ROSA online map
eROSA methodology
2
CONSORTIUM
WWW.EROSA.AGINFRA.EU
Thank you for your attention!
And many thanks to the eROSA team

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Towards an e-infrastrucutre for open science in agriculture and food

  • 1. eROSA has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 730988 ..towards an e-infrastructure for open science for agriculture and food Different views on infrastructure definition and mapping methods Johannes Keizer, for the eROSA team
  • 2. 2 Synthesis Paper on eInfrastructure definitions http://www.erosa.aginfra.eu/vision http://www.erosa.aginfra.eu/vision http://www.erosa.aginfra.eu/vision http://www.erosa.aginfra.eu/vision
  • 3. It is based on and useful for a Community It needs a business model and governance for sustainability A technical backbone that easily can host a variety of services a variety of services, useful for the community, interoperable, but not necessarily connected or dependent from each other 3 Infrastructure has various components
  • 4. Communities of Practice Technical Standards Shared Semantic Business Models Research Facilities Connectivity Computing Power Quite a Lot! And to see in Detail Region-Country- City Laws and Regulations/ Taxes/Fees Streets/Railways/ Electricity/Water Factories/ Transport /Shops/Services Set of Services Technical Backbone Governance Business Model Community
  • 6. Horizon 2020 research and innovation programme - grant agreement No 730988 Montpellier Stakeholder workshop– 2017-07-06 The commissions view ▪ European Open Science Cloud (EOSC) ▪ Integration and consolidation of e- infrastructures ▪ Federation of existing research infrastructures and scientific clouds ▪ Development of cloud-based services for Open Science ▪ Connection of ESFRIs to the EOSC ▪ European Data Infrastructure (EDI) ▪ Development and deployment of large-scale European HPC, data and network infrastructure 6 Industry Scientific Users Public Sector European Open Science Cloud European Data Infrastructure Source: https://ec.europa.eu/digital-single- market/en/%20european-cloud-initiative
  • 7. RDA: Research Data Alliance And how it could be interpreted 7 EOSC EDI Stake- holders Citizens / Communities Farmers Associations Networks NGOs, etc Public Sector Food Agencies Ministries EU DGs, etc Scientific Users Universities Research Centres, etc Industry Bayer Syngenta, etc IoF2020 GACS
  • 8. Horizon 2020 research and innovation programme - grant agreement No 730988 Montpellier Stakeholder workshop– 2017-07-06 Resources and services : 1st approach Iron and Wires Data interoperability http://vest.agrisemantics.org http://agroportal.lirmm.fr/ http://gacs/agrisemantics.org/ Common s! Shared semantics Data, discovery services DCAN Sustainable and trusted storage CCAN DataVerse Call it FAIR data , Virtual research environments Data/Information Portals Data publication, acess, processing and analysis https://data.gov.in/sector/agriculture BioLink Galaxy
  • 9. Horizon 2020 research and innovation programme - grant agreement No 730988 Montpellier Stakeholder workshop– 2017-07-06
  • 10. The 6 levels of “FAIRness”
  • 11. Horizon 2020 research and innovation programme - grant agreement No 730988 Montpellier Stakeholder workshop– 2017-07-06 Mapping under e-ROSA Provide a detailed, comprehensive overview of the current landscape related to data science in agriculture Identify main stakeholders and existing resources within the e-ROSA scope that can support and benefit from the e-ROSA community-building and roadmap elaboration process Tell a story :  Diversity of data types and resources to tackle the challenges of the agri-food science  Identify the gems : data, standards, services, expertise  Help to identify our commons ….
  • 12. Scientific Community Organizations Initiatives Data Resources Data Points Facilities What does eROSA seek to map?
  • 13. Data Points Organizations Initiatives Facilities Definitions all forms of data sources directly or indirectly providing access to data in the field of agriculture and food (“how to get data?”) The organizations within the e-ROSA scope; “data producers”, “data experts” , “data policy” Projects, networks and other initiatives within the e-ROSA scope research infrastructures and e-infrastructures that provide one or several types of data services (“what can you do with data?”)
  • 14. Organization Full Name Description Logo URL Address Geographic Coordinates Scientific Discipline(s) Date Added/Approved ID Name of the Organization Short description Logo of the organization URL Physical/Postal Address Latitude and Longitude of headquarters Branch of scientific knowledge that the Organization works on Date Added/Approved in eROSA Unique Identifier of Organization Acronym Short name of the Organization Geographic Coverage Geographical area of the activities of the Organization Impact Area(s) Application areas for the scientific discipline(s) of Organization (from GACS - Global Agricultural Concept Scheme) Added by (eROSA Partner) The eROSA partner that added the specific record/entry
  • 15. Initiative Full Name Description Logo URL Related Organizations Added by (eROSA Partner) Name of the Initiative Short Description of Initiative Logo Website Relation to the Organization(s) within the initiative The eROSA partner that added the specific record/entry ID Unique Identifier of Initiative Date Added Date Added in eROSA Acronym Short name of the Organization Geographic Coverage Geographical area of the activities of the Initiative Address Geographic Coordinates Physical/Postal Address Latitude and Longitude of headquarters Scientific Discipline(s) Branch of scientific knowledge that the Initiative works on Data Science Category(ies) Types of data services offered by the Initiative Impact Area(s) Application areas for the scientific discipline(s) of Initiative (from GACS - Global Agricultural Concept Scheme)
  • 16. Data Point Full Name Description URL Date Added Geographic Coordinates Type ID Name of Data Point Description of Data Point URL Date Added in eROSA Latitude and Longitude of location Type of Data Point Unique Identifier of Data Point Logo Logo of the Data Point Acronym Short name of the Data Point Geographic Coverage Geographical area of the data within the Data Point Address Physical/Postal Address Access Policy Type of access to the data of the Data Point Open Controlled Private Set Catalogue Repository Aggregator
  • 17. Data Point Impact Areas Related Organization(s) Application areas for the scientific discipline(s) of Data Point (from GACS - Global Agricultural Concept Scheme) Relation/Connection to any Organization(s) Related Initiative(s) Relation/Connection to any Initiative(s) Related Facilities(s) Relation/Connection to any Facilitie(s) Added by (eROSA Partner) The eROSA partner that added the specific record/entry Scientific Discipline(s) Branch of scientific knowledge that the Data Point concerns Agriculture - General Animal Production and Health Economics and Policy Education and Extension Engineering, Technology and Research Farming Practices and Systems Forestry General Arts and Humanities Geographical and Regional Information Government, Administration and Legislation Information Management Medicine Fisheries and Aquaculture Food safety and Human nutrition Food Security Natural Resources and Environment Plant Production and Protection Rural and Social Development
  • 18. Organization Full Name Description Logo URL Address Geographic Coordinates Scientific Discipline(s) Date Added/Approved ID Name of the Organization Short description Logo of the organization URL Physical/Postal Address Latitude and Longitude of headquarters Branch of scientific knowledge that the Organization works on Date Added/Approved in eROSA Unique Identifier of Organization Acronym Short name of the Organization Geographic Coverage Geographical area of the activities of the Organization Impact Area(s) Application areas for the scientific discipline(s) of Organization (from GACS - Global Agricultural Concept Scheme) Added by (eROSA Partner) The eROSA partner that added the specific record/entry
  • 19. Initiative Full Name Description Logo URL Related Organizations Added by (eROSA Partner) Name of the Initiative Short Description of Initiative Logo Website Relation to the Organization(s) within the initiative The eROSA partner that added the specific record/entry ID Unique Identifier of Initiative Date Added Date Added in eROSA Acronym Short name of the Organization Geographic Coverage Geographical area of the activities of the Initiative Address Geographic Coordinates Physical/Postal Address Latitude and Longitude of headquarters Scientific Discipline(s) Branch of scientific knowledge that the Initiative works on Data Science Category(ies) Types of data services offered by the Initiative Impact Area(s) Application areas for the scientific discipline(s) of Initiative (from GACS - Global Agricultural Concept Scheme)
  • 20. Facility Full Name Geographic Coverage Date Added Address Geographic Coordinates URL Development Stage Description ID Name of the Facility Geographical area covered by the Facility Date Added in eROSA Physical/Postal Address Latitude and Longitude of location URL Stage of Development for the Facility Description of the Facility Unique Identifier of Facility Logo Logo of the Facility Acronym Short name of the Facility Project Operational service Access Policy Type of access to the Facility Scientific Discipline(s) Branch of scientific knowledge that the Facility concerns
  • 21. Facility Type Farm Garden Greenhouse Laboratory Land Ranch Research center/station Education center Virtual Lab Type of Facility e-Infrastructure Field Station Impact Areas Related Organization(s) Application areas for the scientific discipline(s) of Data Point (from GACS - Global Agricultural Concept Scheme) Relation/Connection to any Organization(s) Related Initiative(s) Relation/Connection to any Initiative(s) Network of research infrastructures Added by (eROSA Partner) The eROSA partner that added the specific record/entry Data Science Category(ies) Types of data services offered by the Facility Data production Data discovery & access Computation Data visualisation Data veracity Data storage Semantics Technical data interoperability Modelling, statistics & simulation Workflows Data ownership Data publication Data integration Support for decision-making Governance
  • 24. CONSORTIUM WWW.EROSA.AGINFRA.EU Thank you for your attention! And many thanks to the eROSA team