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EOSC-hub receives funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 777536.
Abdulrahman Azab
University of Oslo
T6.6 Sensitive Data Activities
OpenAIRE EOSC-hub Webinar
December 6th
CSC – Finnish research, education, culture and public administration ICT knowledge center
CSC ePouta secure cloud
406.12.2018
506.12.2018
606.12.2018
706.12.2018
806.12.2018
9
• Apply for a CSC project (You can apply through EOSC-hub)
• Setup your own network
• Establish the connection with your ePouta network
- OPN (Optical Private Network) or - within FUNET and European academic networks - an
MPLS (Multiprotocol Label Switching) connection
• More info:
• Connection: https://research.csc.fi/pouta-application
• Pricing (google “epouta pricing”)
Getting Access to ePouta
06.12.2018
CSC Sensitive data platform
Services for Sensitive Data
TSD in a nutshell
VMs
High performance
computing
Storage
2-factor
authentication
• Analyzes
• Software
• Databases
• Data collection
Firewall
BeeGFS
TSD Architecture
NFSp01 p02 pN
p01 p02 pN
ColossusTwofactorAuthentication
Singularity Repo
Compute
container
CVMFS Repo
Singularitycontainers
Condor
CM
container
container
Compute
container
Docker Singularity
Compute
container
Docker SingularityDocker Singularity
Compute
container
Docker Singularity
Reference data
Compute
container
Docker Singularity
Compute
container
SingularityDocker
Local
Docker Registry
Docker Repo
Docker Images
Elastic expansion
Docker swarm
Project storage
Sensitive data
Shared Storage
TSDFirewall
ProjectVLAN
bio.tools
GYOSC2 – Get Your Own Secure Container Cluster
# Research project over time
TSD in rapid growth
30
80
130
180
230
280
21.04.2014 07.11.2014 26.05.2015 12.12.2015 29.06.2016 15.01.2017 03.08.2017
Ø > 500 research projects
Ø > 2200 users
Ø > 800 virtual machines
Ø ~ 2.0 petabyte data
• Web form – online questionnaire for secure data collection
• API – import of data from smartphone and tablet
• Min Mat - Mapping of malnutrition in patients
• Others ….
Data collection
The consent system is a system designed to provide a service that manages
the consents given by persons for handling data imported in TSD by a project.
The consents are intended to allow the persons provided data to be
processed by researchers inside TSD. The system will provide the following
functionality:
• Allow a person to give, view and revoke consents for a data uploaded in
TSD.
• Allow a researches query user consent for a data in TSD
06.12.2018
17
TSD Consent system
06.12.2018
18
TSD Consent system - Design
06.12.2018
19
TSD Consent system - Query
20
• PaaS & SaaS à We take care of you J
• Support for both Windows and Linux (platform and software)
• High performance computing (HPC) à both elastic and bare metal
• Sensitive data Web forms
• Data collection using Smart devices
• Consent system
• Anonymization of structured data
TSD features summary
06.12.2018
21
• Apply for a TSD project (You can apply through EOSC-hub)
Getting Access to TSD
06.12.2018
In the electronic application you will be asked to upload the documentation collected
during the following steps:
• Step 1: Some document proving your rights to perform your research (i.e. your data
usage approval) (typically REK, NSD, Privacy Officer, Data Inspectorate or other such
body).
NB : If your research falls outside of this, but still has data that should be especially secured, you just
upload a document that describes the situation. Typically economic secrets or other data that is
business secrets.
• Step 2: Documentation regarding partner institutions (if of interest to the project
application, most of the time this is not needed)
• Step 3: Data Processor Agreement between your institution and UiO/TSD
• Step 4: TSD Commercial Contract between your project and UiO/TSD
• Step 5: Electronic Application (required)
06.12.2018
22
Apply for a TSD project
23
• Apply for a TSD project (You can apply through EOSC-hub)
• Upload your data
• Start working J
• More info:
• User guide: https://www.uio.no/english/services/it/research/sensitive-data/use-tsd/
• Pricing (google “TSD pricing”)
Getting Access to TSD
06.12.2018
EOSC hub activities
B2SHARE
25
26
Simple Setup (ongoing)
B2Access
B2Access IdP
Data
PXX
Data
PYY
B2Find B2share
pXXaccount
pXX
users
pYY
users
pYY
account
TSD/ePouta
Secure B2SHARE setup
(planned)
28
29
uDocker
• User space container platform (No admin
privileges)
• Compatible with Docker (no conversion)
• Supports MPI
• Suitable for secure e-infrastructure
• Ongoing work for support by TSD and
ePouta
30
Amnesia
• Data anonymization tool, that allows to
remove identifying information from data.
31
BeeGFS
NFSp01 p02 pN
p01 p02 pN
ColossusTwofactorAuthentication
Summary
• Using personal data for research purposes poses
challenges for IT infrastructure – but these can be solved!
• CSC ePouta and UiO/TSD are operational secure e-
infrastructure for sensitive research data
• CSC ePouta secure cloud and UiO/TSD provide sensitive
data and compute service in EOSC-hub
• https://www.eosc-
hub.eu/catalogue/Services%20for%20sensitive%20data
Other Nordic activities
Integration of ePouta and TSD
TSD
NeIC Tryggve
• Nordic collaboration for sensitive
data funded by NeIC and ELIXIR
nodes of participating countries.
• develops and facilitates access
to secure e-infrastructure for
sensitive data, suitable for
hosting large-scale cross-border
biomedical research studies.
Kuvat CSC:n arkisto ja Thinkstock
Antti Pursula
Antti.Pursula@csc.fi
Chris Ariyo
Chris.Ariyo@csc.fi
https://www.csc.fi/
Abdulrahman Azab
azab@usit.uio.no
www.uio.no
Contact information
Maria Francesca Iozzi
maria.iozzi@uninett.no
www.uninett.no
T6.6 Sensitive Data Activities

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T6.6 Sensitive Data Activities

  • 1. EOSC-hub receives funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 777536. Abdulrahman Azab University of Oslo T6.6 Sensitive Data Activities OpenAIRE EOSC-hub Webinar December 6th
  • 2. CSC – Finnish research, education, culture and public administration ICT knowledge center CSC ePouta secure cloud
  • 8. 9 • Apply for a CSC project (You can apply through EOSC-hub) • Setup your own network • Establish the connection with your ePouta network - OPN (Optical Private Network) or - within FUNET and European academic networks - an MPLS (Multiprotocol Label Switching) connection • More info: • Connection: https://research.csc.fi/pouta-application • Pricing (google “epouta pricing”) Getting Access to ePouta 06.12.2018
  • 11. TSD in a nutshell VMs High performance computing Storage 2-factor authentication • Analyzes • Software • Databases • Data collection Firewall
  • 12. BeeGFS TSD Architecture NFSp01 p02 pN p01 p02 pN ColossusTwofactorAuthentication
  • 13. Singularity Repo Compute container CVMFS Repo Singularitycontainers Condor CM container container Compute container Docker Singularity Compute container Docker SingularityDocker Singularity Compute container Docker Singularity Reference data Compute container Docker Singularity Compute container SingularityDocker Local Docker Registry Docker Repo Docker Images Elastic expansion Docker swarm Project storage Sensitive data Shared Storage TSDFirewall ProjectVLAN bio.tools GYOSC2 – Get Your Own Secure Container Cluster
  • 14. # Research project over time TSD in rapid growth 30 80 130 180 230 280 21.04.2014 07.11.2014 26.05.2015 12.12.2015 29.06.2016 15.01.2017 03.08.2017 Ø > 500 research projects Ø > 2200 users Ø > 800 virtual machines Ø ~ 2.0 petabyte data
  • 15. • Web form – online questionnaire for secure data collection • API – import of data from smartphone and tablet • Min Mat - Mapping of malnutrition in patients • Others …. Data collection
  • 16. The consent system is a system designed to provide a service that manages the consents given by persons for handling data imported in TSD by a project. The consents are intended to allow the persons provided data to be processed by researchers inside TSD. The system will provide the following functionality: • Allow a person to give, view and revoke consents for a data uploaded in TSD. • Allow a researches query user consent for a data in TSD 06.12.2018 17 TSD Consent system
  • 19. 20 • PaaS & SaaS à We take care of you J • Support for both Windows and Linux (platform and software) • High performance computing (HPC) à both elastic and bare metal • Sensitive data Web forms • Data collection using Smart devices • Consent system • Anonymization of structured data TSD features summary 06.12.2018
  • 20. 21 • Apply for a TSD project (You can apply through EOSC-hub) Getting Access to TSD 06.12.2018
  • 21. In the electronic application you will be asked to upload the documentation collected during the following steps: • Step 1: Some document proving your rights to perform your research (i.e. your data usage approval) (typically REK, NSD, Privacy Officer, Data Inspectorate or other such body). NB : If your research falls outside of this, but still has data that should be especially secured, you just upload a document that describes the situation. Typically economic secrets or other data that is business secrets. • Step 2: Documentation regarding partner institutions (if of interest to the project application, most of the time this is not needed) • Step 3: Data Processor Agreement between your institution and UiO/TSD • Step 4: TSD Commercial Contract between your project and UiO/TSD • Step 5: Electronic Application (required) 06.12.2018 22 Apply for a TSD project
  • 22. 23 • Apply for a TSD project (You can apply through EOSC-hub) • Upload your data • Start working J • More info: • User guide: https://www.uio.no/english/services/it/research/sensitive-data/use-tsd/ • Pricing (google “TSD pricing”) Getting Access to TSD 06.12.2018
  • 25. 26 Simple Setup (ongoing) B2Access B2Access IdP Data PXX Data PYY B2Find B2share pXXaccount pXX users pYY users pYY account TSD/ePouta
  • 27. 28
  • 28. 29
  • 29. uDocker • User space container platform (No admin privileges) • Compatible with Docker (no conversion) • Supports MPI • Suitable for secure e-infrastructure • Ongoing work for support by TSD and ePouta 30
  • 30. Amnesia • Data anonymization tool, that allows to remove identifying information from data. 31
  • 31. BeeGFS NFSp01 p02 pN p01 p02 pN ColossusTwofactorAuthentication
  • 32. Summary • Using personal data for research purposes poses challenges for IT infrastructure – but these can be solved! • CSC ePouta and UiO/TSD are operational secure e- infrastructure for sensitive research data • CSC ePouta secure cloud and UiO/TSD provide sensitive data and compute service in EOSC-hub • https://www.eosc- hub.eu/catalogue/Services%20for%20sensitive%20data
  • 34. Integration of ePouta and TSD TSD
  • 35. NeIC Tryggve • Nordic collaboration for sensitive data funded by NeIC and ELIXIR nodes of participating countries. • develops and facilitates access to secure e-infrastructure for sensitive data, suitable for hosting large-scale cross-border biomedical research studies.
  • 36. Kuvat CSC:n arkisto ja Thinkstock Antti Pursula Antti.Pursula@csc.fi Chris Ariyo Chris.Ariyo@csc.fi https://www.csc.fi/ Abdulrahman Azab azab@usit.uio.no www.uio.no Contact information Maria Francesca Iozzi maria.iozzi@uninett.no www.uninett.no