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CONTACT: PRAVEEN KUMAR. L (,+91 – 9791938249)
MAIL ID: , praveen@nexgenproject.com
Web: www.nexgenproject.com,
INTELLIGENT GENERATOR OF BIG DATA MEDICALIMAGING
REPOSITORIES
ABSTRACT:
The production of medical imaging data has grown tremendously in the last decades. Nowadays,
even small institutions produce a considerable amount of studies. Furthermore, the general trend
in new imaging modalities is to produce more data per examination. As a result, the design and
implementation of tomorrow's storage and communication systems must deal with big data
issues. The research on technologies to cope with big data issues in large scale medical imaging
environments is still in its early stages. This is mostly due to the difficulty of implementing and
validating new technological approaches in real environments, without interfering with clinical
practice. Therefore, it is crucial to create test bed environments for research purposes. This study
proposes a methodology for creating simulated medical imaging repositories, based on the
indexing of model datasets, extraction of patterns and modeling of study production. The system
creates a model from a real world repository's representative time window and expands it
according to on-going research needs. In addition, the solution provides distinct approaches to
reducing the size of the generated datasets. The proposed system has already been used byother
research projects in validation processes that aim to assess the performance and scalability of
developed systems.
PROPOSED SYSTEM:
This paper proposes and describes a new system able to generate big datasets using only
representative portions of data extracted from real environments, causing no impact on
production processes. The generated repositories are excellent elements for supporting research,
development and validation of PACS technologies. This section presents our methodology for
CONTACT: PRAVEEN KUMAR. L (,+91 – 9791938249)
MAIL ID: , praveen@nexgenproject.com
Web: www.nexgenproject.com,
generating big data medical imaging repositories to be used in controlled laboratory trials. This
methodology was instantiated as a software system which orchestrates multiple components to
(i) capture the production statistics of an existing repository over a period of time;(ii) create a
representative regression model of the collected productivity statistics; (iii) and finally, generate
datasets of DICOM files with similar productivity to the model, however possibly encompassing
larger time periods. The main challenge is to captures accurately as possible how productivity
has evolved over time in the model repository. In this regard, we have also included a results
section intended to assess this accuracy, and validate our method.
EXISTING SYSTEM:
The DICOM Standard [15] was introduced in 1993 by National Electrical Manufacturers
Association, with the main purpose of normalizing data structures and communications to
promote interoperability between different PACS components. Before that, every manufacturer
had its own protocol, which promoted vendor locking situations and poor exploitation of
resources. Nowadays, it is a de facto standard, universally adopted by distinct medical imaging
modalities and manufacturers. This standard normalizes the content of medical imaging objects,
how they should be formatted and broadcast among the different PACS applications[16]. For
simplicity purposes, this article will not deal with the communication part of the standard, since
the proposed methods only demand knowledge of DICOM data structures. A DICOM object
aggregates metadata with images’ pixel data[16]. The header contains meaningful information
associated with the examination such as patient identification, equipment details, and radiation
exposure information. These elements have a unique identifier [17] denominated as tag. For
instance, the Patient Name attribute is identified by the tag (0010,0010). These attributes
reorganized in semantic groups following the DICOM Information Model, a hierarchical
database that captures real-world organization: patientstudyseriesimages. A patient has
multiple studies that may have multiple series that include one or more images. DICOM supports
27 data types; the attributes are matched to their data type using a dictionary [5], alternately, each
CONTACT: PRAVEEN KUMAR. L (,+91 – 9791938249)
MAIL ID: , praveen@nexgenproject.com
Web: www.nexgenproject.com,
attribute may declare its data type explicitly. Although the DICOM standard specifies a wide
range of attributes, new ones can be declared via private dictionaries. Therefore, the standard is
extensible and manufacturers can include their latest equipment metadata. Finally, a file object
may contain one or more images (i.e. cine-loop) [18].Fig. 1 provides an example of a DICOM
file's metadata and its hierarchical organization. It is perceivable that the root object holds
multiple data elements. These elements can be composite elements holding further members in
their hierarchy.
Conclusions
Nowadays, researchers on medical imaging networks and storage systems face a major issue
when validating their contributions. The lack of big datasets that perfectly mimic real
institutional scenarios is a serious constraint regarding the quality of their contributions. Many of
those proposals have been validated with datasets that are simply not large enough to stress them,
i.e. push the system towards its operational limit to determine its robustness, availability, and
error handling under heavy load as real laboratories would. Drawing conclusions based on poorly
designed trials may induce errors and hinder future research efforts. Moreover, most developers
do not have a clear picture of how their solutions will perform in the long-term. Due to this lack
of knowledge, unpredicted episodes may take place during the PACS lifetime, compromising the
healthcare service provision. The proposed methods address these issues by enabling the creation
of artificial datasets with the same characteristics as a model dataset, for instance, a real-world
institutional repository. Moreover, these methods enable the creation of larger datasets to be used
in long term and big data exploration scenarios. For this purpose, the approach used to reduce the
size of the generated datasets seems vital
References
CONTACT: PRAVEEN KUMAR. L (,+91 – 9791938249)
MAIL ID: , praveen@nexgenproject.com
Web: www.nexgenproject.com,
[1] Vienna-Ferreira, C., Costa, C.: ‘Challenges of using cloud computing in medical imaging’, in
Ramachandran, M. (Ed.): ‘Advances in Cloud Computing Research’ (Nova Publisher, 2014)
[2] Tabaco, P., Labret, F., Bertrand, L., et al.: ‘Effects of outsourcing magnetic resonance
examinations from a public university hospital to private agent’, Act Radial., 2011, 52, (1), pp.
81–85
[3] Silva, L.B., Costa, C., Oliveira, J.: ‘A PACS archive architecture supported on cloud
services’, Int. J. Compute. Assist. Radial. Surg., 2012, 7, (3), pp. 349–358
[4] Huang, H.K.: ‘PACS and imaging informatics: basic principles and applications’ (Wiley,
2010, 2nd end.)
[5] Pinky, O.S.: ‘Digital imaging and communications in medicine (DICOM):A practical
introduction and survival guide’ (Springer, 2008)
[6] Santos, M., de Francesco, S., Silva, L.A.B., et al.: ‘Multi vendor DICOM metadata access a
multi site hospital approach using Decouple’. Information Systems and Technologies (CISTI),
2013 8th Iberian Conf. on, 2013
[7] Savarins, A., Harder, T., von Wangenheim, A.: ‘DCMDSM: a DICOM decomposed storage
model’, J. Am. Med. Inf. Assoc., 2014, 21, (5), pp. 917–924
[8] Jin, Z., Chen, Y.: ‘Telemedicine in the Cloud Era: prospects and challenges’ ,IEEE Pervasive
Compute., 2015, 14, (1), pp. 54–61
[9] Hue, Y., Kundakcioglu, E., Jing, L., et al.: ‘Healthcare intelligence: turning data into
knowledge’, IEEE Intel. Syst., 2014, 29, (3), pp. 54–68
[10] Sernadela, P., Lopes, P., Oliveira, J.L.: ‘A knowledge federation architecture for rare
disease patient registries and bio banks’, J. Inf. Syst. Eng. Manage.,2016, 1, pp. 83–90
CONTACT: PRAVEEN KUMAR. L (,+91 – 9791938249)
MAIL ID: , praveen@nexgenproject.com
Web: www.nexgenproject.com,
[11] Prado, T., de Macedon, D.J., Danas, M.A.R., et al.: ‘Optimization of PACS data persistency
using indexed hierarchical data’, J. Digit. Imaging, 2014, 27,(3), pp. 297–308
[12] Costa, C., Ferreira, C., Bastia, L., et al.: ‘Decouple - an open source peer-topeer PACS’,
Digit. Imaging,2011,24,(5), pp. 848–856
[13] Bastia Silva, L.A., Brood, L., Costa, C., et al.: ‘Medical imaging archiving: A comparison
between several Nosily solutions’. Biomedical and Health Informatics (BHI), 2014 IEEE-EMBS
Int. Conf. on, 2014
[14] Godin, T.M., Vienna-Ferreira, C., Silva, L.A.B., et al.: ‘A routing mechanism for cloud
outsourcing of medical imaging repositories’, IEEE Biomed. Health Inf., 2016, 20, (1), pp. 367–
375

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Intelligent generator of big data medical

  • 1. CONTACT: PRAVEEN KUMAR. L (,+91 – 9791938249) MAIL ID: , praveen@nexgenproject.com Web: www.nexgenproject.com, INTELLIGENT GENERATOR OF BIG DATA MEDICALIMAGING REPOSITORIES ABSTRACT: The production of medical imaging data has grown tremendously in the last decades. Nowadays, even small institutions produce a considerable amount of studies. Furthermore, the general trend in new imaging modalities is to produce more data per examination. As a result, the design and implementation of tomorrow's storage and communication systems must deal with big data issues. The research on technologies to cope with big data issues in large scale medical imaging environments is still in its early stages. This is mostly due to the difficulty of implementing and validating new technological approaches in real environments, without interfering with clinical practice. Therefore, it is crucial to create test bed environments for research purposes. This study proposes a methodology for creating simulated medical imaging repositories, based on the indexing of model datasets, extraction of patterns and modeling of study production. The system creates a model from a real world repository's representative time window and expands it according to on-going research needs. In addition, the solution provides distinct approaches to reducing the size of the generated datasets. The proposed system has already been used byother research projects in validation processes that aim to assess the performance and scalability of developed systems. PROPOSED SYSTEM: This paper proposes and describes a new system able to generate big datasets using only representative portions of data extracted from real environments, causing no impact on production processes. The generated repositories are excellent elements for supporting research, development and validation of PACS technologies. This section presents our methodology for
  • 2. CONTACT: PRAVEEN KUMAR. L (,+91 – 9791938249) MAIL ID: , praveen@nexgenproject.com Web: www.nexgenproject.com, generating big data medical imaging repositories to be used in controlled laboratory trials. This methodology was instantiated as a software system which orchestrates multiple components to (i) capture the production statistics of an existing repository over a period of time;(ii) create a representative regression model of the collected productivity statistics; (iii) and finally, generate datasets of DICOM files with similar productivity to the model, however possibly encompassing larger time periods. The main challenge is to captures accurately as possible how productivity has evolved over time in the model repository. In this regard, we have also included a results section intended to assess this accuracy, and validate our method. EXISTING SYSTEM: The DICOM Standard [15] was introduced in 1993 by National Electrical Manufacturers Association, with the main purpose of normalizing data structures and communications to promote interoperability between different PACS components. Before that, every manufacturer had its own protocol, which promoted vendor locking situations and poor exploitation of resources. Nowadays, it is a de facto standard, universally adopted by distinct medical imaging modalities and manufacturers. This standard normalizes the content of medical imaging objects, how they should be formatted and broadcast among the different PACS applications[16]. For simplicity purposes, this article will not deal with the communication part of the standard, since the proposed methods only demand knowledge of DICOM data structures. A DICOM object aggregates metadata with images’ pixel data[16]. The header contains meaningful information associated with the examination such as patient identification, equipment details, and radiation exposure information. These elements have a unique identifier [17] denominated as tag. For instance, the Patient Name attribute is identified by the tag (0010,0010). These attributes reorganized in semantic groups following the DICOM Information Model, a hierarchical database that captures real-world organization: patientstudyseriesimages. A patient has multiple studies that may have multiple series that include one or more images. DICOM supports 27 data types; the attributes are matched to their data type using a dictionary [5], alternately, each
  • 3. CONTACT: PRAVEEN KUMAR. L (,+91 – 9791938249) MAIL ID: , praveen@nexgenproject.com Web: www.nexgenproject.com, attribute may declare its data type explicitly. Although the DICOM standard specifies a wide range of attributes, new ones can be declared via private dictionaries. Therefore, the standard is extensible and manufacturers can include their latest equipment metadata. Finally, a file object may contain one or more images (i.e. cine-loop) [18].Fig. 1 provides an example of a DICOM file's metadata and its hierarchical organization. It is perceivable that the root object holds multiple data elements. These elements can be composite elements holding further members in their hierarchy. Conclusions Nowadays, researchers on medical imaging networks and storage systems face a major issue when validating their contributions. The lack of big datasets that perfectly mimic real institutional scenarios is a serious constraint regarding the quality of their contributions. Many of those proposals have been validated with datasets that are simply not large enough to stress them, i.e. push the system towards its operational limit to determine its robustness, availability, and error handling under heavy load as real laboratories would. Drawing conclusions based on poorly designed trials may induce errors and hinder future research efforts. Moreover, most developers do not have a clear picture of how their solutions will perform in the long-term. Due to this lack of knowledge, unpredicted episodes may take place during the PACS lifetime, compromising the healthcare service provision. The proposed methods address these issues by enabling the creation of artificial datasets with the same characteristics as a model dataset, for instance, a real-world institutional repository. Moreover, these methods enable the creation of larger datasets to be used in long term and big data exploration scenarios. For this purpose, the approach used to reduce the size of the generated datasets seems vital References
  • 4. CONTACT: PRAVEEN KUMAR. L (,+91 – 9791938249) MAIL ID: , praveen@nexgenproject.com Web: www.nexgenproject.com, [1] Vienna-Ferreira, C., Costa, C.: ‘Challenges of using cloud computing in medical imaging’, in Ramachandran, M. (Ed.): ‘Advances in Cloud Computing Research’ (Nova Publisher, 2014) [2] Tabaco, P., Labret, F., Bertrand, L., et al.: ‘Effects of outsourcing magnetic resonance examinations from a public university hospital to private agent’, Act Radial., 2011, 52, (1), pp. 81–85 [3] Silva, L.B., Costa, C., Oliveira, J.: ‘A PACS archive architecture supported on cloud services’, Int. J. Compute. Assist. Radial. Surg., 2012, 7, (3), pp. 349–358 [4] Huang, H.K.: ‘PACS and imaging informatics: basic principles and applications’ (Wiley, 2010, 2nd end.) [5] Pinky, O.S.: ‘Digital imaging and communications in medicine (DICOM):A practical introduction and survival guide’ (Springer, 2008) [6] Santos, M., de Francesco, S., Silva, L.A.B., et al.: ‘Multi vendor DICOM metadata access a multi site hospital approach using Decouple’. Information Systems and Technologies (CISTI), 2013 8th Iberian Conf. on, 2013 [7] Savarins, A., Harder, T., von Wangenheim, A.: ‘DCMDSM: a DICOM decomposed storage model’, J. Am. Med. Inf. Assoc., 2014, 21, (5), pp. 917–924 [8] Jin, Z., Chen, Y.: ‘Telemedicine in the Cloud Era: prospects and challenges’ ,IEEE Pervasive Compute., 2015, 14, (1), pp. 54–61 [9] Hue, Y., Kundakcioglu, E., Jing, L., et al.: ‘Healthcare intelligence: turning data into knowledge’, IEEE Intel. Syst., 2014, 29, (3), pp. 54–68 [10] Sernadela, P., Lopes, P., Oliveira, J.L.: ‘A knowledge federation architecture for rare disease patient registries and bio banks’, J. Inf. Syst. Eng. Manage.,2016, 1, pp. 83–90
  • 5. CONTACT: PRAVEEN KUMAR. L (,+91 – 9791938249) MAIL ID: , praveen@nexgenproject.com Web: www.nexgenproject.com, [11] Prado, T., de Macedon, D.J., Danas, M.A.R., et al.: ‘Optimization of PACS data persistency using indexed hierarchical data’, J. Digit. Imaging, 2014, 27,(3), pp. 297–308 [12] Costa, C., Ferreira, C., Bastia, L., et al.: ‘Decouple - an open source peer-topeer PACS’, Digit. Imaging,2011,24,(5), pp. 848–856 [13] Bastia Silva, L.A., Brood, L., Costa, C., et al.: ‘Medical imaging archiving: A comparison between several Nosily solutions’. Biomedical and Health Informatics (BHI), 2014 IEEE-EMBS Int. Conf. on, 2014 [14] Godin, T.M., Vienna-Ferreira, C., Silva, L.A.B., et al.: ‘A routing mechanism for cloud outsourcing of medical imaging repositories’, IEEE Biomed. Health Inf., 2016, 20, (1), pp. 367– 375