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Role  of  the  Glutamic  Acid  54  
Residue  in  Transthyretin  
Stability  and  
Thyroxine  Binding	
Masanori  Miyata  et.  al	
Reuben  Sequeira	
University  Of  Kansas	
May  5,  2010
Presentation  Overview	
o  Background  on  Transthyretin	
•  Mutations  causing  Amyloidosis	
•  Significance  in  disease  study	
o  Purpose  of  this  research	
o  Methods  and  techniques  used	
•  X-­‐‑ray  crystallography  	
•  3D  transthyretin  models	
o  Results	
o  Discussion	
•  Take  home  message  from  this  research
Familial  Amyloid  Neuropathy	
o  Onset  of  disease  during  ages  20  –  40	
o  Hereditary  and  autosomal  dominant  disease→  need  only  
one  mutation  in  one  gene  to  acquire  FAP	
o  Disease  observed  worldwide  but  first  detected  in  
Portugal.  	
o  E54K  mutation  prevalent    in  cases  within  Japan  and  E54G  
common  in  the  UK  (1)	
o  Amyloid  deposits  in  various  tissues  results  in  multiple  
neuropathy
Transthyretin  a.k.a  TTR	
o  Transports  thyroxine  and  retinol	
o  55kDa  homotetramer  (127  residue  monomers).  Gene  located  on  chromosome  
18	
o  Synthesized  in  the  liver	
o  Maintains  normal  level  of  retinol,  Vitamin  A  binding  protein  and  thyroid  
hormone  in  blood  plasma
Essence  of  this  Research  	
o  By  studying  the  E54G    and  E54K  mutations  and  their  TTR  products,  a  
comparison  can  be  made  with  wt  TTR  and  hence  the  importance  of  the  
Glu54  residue  in  TTR.
Methods  and  Approach	
Expression  and  Purification	
•  E54G/E54K  plasmids  prepared  using  site-­‐‑directed  mutagenesis	
•  Anion-­‐‑exchange  chromatography  and  reverse-­‐‑phase  HPLC	
CD  (Circular  dichroism)  TTR  stability  assay	
•  Incubated  in  0-­‐‑8M  Urea  at  25˚C  for  96h	
Tetramer-­‐‑monomer  transition  Assay	
•  100mM  KCl  induced  at  pH  3.5-­‐‑7	
	
Another  TTR  stability  assay  based  on  T4  binding	
	
Thioflavin  T  binding  assay  after  incubation  with  KCl	
	
And…
…X-­‐‑Ray  Crystallography  and  
Structure  Determination	
o  Crystal  formation  10days  after  incubation  with  200  mM  citrate  
buffer  and  3  M  ammonium  sulfate    pH  5.3	
•  Steps  in  crystallographic  study	
o  Crystallization	
o  X-­‐‑ray  diffraction  pahern  and  raw  data  collection	
o  Refinement  of  data	
o  Compute  electron  density  map	
o  Build  and  refine  3D  model
Results  and  Findings	
•  wt  TTR  and  E54G  TTR  have  similar  fractions  of  monomers/tetramers  at  
indicated  pH	
•  E54K  TTR  has  significantly  more  monomer  formation  than  wt/E54G	
•    stability  based  on  urea  denaturation→  wild-­‐‑type  TTR  (Cm=3.54)>E54G  
(Cm=3.05)>E54K  (Cm=2.58)
•  Different  distances  
between  the  two  54  
residues  in  the  dimer-­‐‑
dimer  interface	
•  Distinct  surface  
electrostatic  potential  
around  residue  54
•  Glu54  forms  a  hydrogen  
bond  with  Lys15  and  
His56,  stabilizing  
positive  charge  of  Lys15	
•  In  E54G,  a  water  
molecule  mediates  
interaction  between  S52  
and  His56	
•  In  E54K,  H-­‐‑bond  is  
broken  and  K15/K54  
causes  repulsion
Amyloid  fibril  formation  and  stability  of  tetramer
•  54  is  at  the  opening  of  the  T4  binding  pocket	
•  E54G  and  E54K  had  the  highest    and  lowest  T4  association	
and  dissociation  rates  respectively.
Tetramer  stability  and  Amyloid  fibril  
formation  in  the  presence  of  T4	
•  wt  TTR  :  12.18  monomer  ratio  	
•  monomer  level  of  E54G  TTR  was  34.43	
•  monomer  level  of  E54K  TTR  was  92.18  
What  do  these  findings  tell  us??	
•  wild-­‐‑type  and  Glu54  TTR  variants  have  significantly  different  
side  chain  interactions  and  surface  electrostatic  potential  
around  residue  54	
	
•  Glu54  modulates  the  positive  charge  of  Lys15  and  hence  
minimizes  the  repulsion  between  K15  of  the  two  monomers  
which  stabilizes  the  tetramer	
•  The  change  of  residue  54  in  the  TTR  variants  affects  T4  binding  
and  hence  decreased  T4  binding  increases  tetramer  instability
Closing  thoughts	
•  Various  FAP  associated  mutations  lead  to  TTR  tetramer  
instability  and  hence  favoring  amyloidogenises	
•  Could  another  residue  besides  Glu54  (wt)  stabilize  the  
tetramer?	
•  T4  binding  studies  using  these  residues  located  in  the  
pocket,  show  that  binding  affinity  is  important  to  tetramer  
stability	
•  Small  molecules  are  in  the  process  of  being  developed  that  
can  appropriately  bind  to  this  pocket  with  high  affinity  and  
decrease  fibril  formation
Acknowledgements	
I  would  like  to  thank  HaiYan  Zhao  and  Dr.  Tang  for  
crystallography  expertise.  I  would  also  like  to  thank  
Shyam  Mehta  for  giving  me  useful  tips  for  this  
presentation.
References	
•  Miyata  et.  al.  (2010)  Role  of  the  Glutamic  Acid  54  Residue  in  Transthyretin  
Stability  and  Thyroxine  Binding.  Biochemistry  2010,  49,  114–123.	
•  Ando,  Y.,  Araki,  S.,  and  Ando,  M.  (1993)  Transthyretin  and  familial  
amyloidotic  polyneuropathy.  Intern.  Med.  32,  920–922.	
•  Miroy,  G.  J.,  Lai,  Z.,  Lashuel,  H.  A.,  Peterson,  S.  A.,  Strang,  C.,  and  Kelly,  J.  
W.  (1996)  Inhibiting  transthyretin  amyloid  fibril  formation  via  protein  
stabilization.  Proc.  Natl.  Acad.  Sci.  U.S.A.  93,  15051–15056.	
•  Miroy,  G.  J.,  Lai,  Z.,  Lashuel,  H.  A.,  Peterson,  S.  A.,  Strang,  C.,  and  Kelly,  J.  
W.  (1996)  Inhibiting  transthyretin  amyloid  fibril  formation  via  protein  
stabilization.  Proc.  Natl.  Acad.  Sci.  U.S.A.  93,  15051–15056.	
•  <hhp://www.iupui.edu/~amyloid/information.htm>	
•  <hhp://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=gene&part=tfap>	
•  <hhp://ghr.nlm.nih.gov/condition=transthyretinamyloidosis>
{	
Questions  and  Comments?	
Thank  You  and  Happy  
Cinqo  de  Mayo!!

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Senior Seminar Presentation

  • 1. { Role  of  the  Glutamic  Acid  54   Residue  in  Transthyretin   Stability  and   Thyroxine  Binding Masanori  Miyata  et.  al Reuben  Sequeira University  Of  Kansas May  5,  2010
  • 2. Presentation  Overview o  Background  on  Transthyretin •  Mutations  causing  Amyloidosis •  Significance  in  disease  study o  Purpose  of  this  research o  Methods  and  techniques  used •  X-­‐‑ray  crystallography   •  3D  transthyretin  models o  Results o  Discussion •  Take  home  message  from  this  research
  • 3. Familial  Amyloid  Neuropathy o  Onset  of  disease  during  ages  20  –  40 o  Hereditary  and  autosomal  dominant  disease→  need  only   one  mutation  in  one  gene  to  acquire  FAP o  Disease  observed  worldwide  but  first  detected  in   Portugal.   o  E54K  mutation  prevalent    in  cases  within  Japan  and  E54G   common  in  the  UK  (1) o  Amyloid  deposits  in  various  tissues  results  in  multiple   neuropathy
  • 4. Transthyretin  a.k.a  TTR o  Transports  thyroxine  and  retinol o  55kDa  homotetramer  (127  residue  monomers).  Gene  located  on  chromosome   18 o  Synthesized  in  the  liver o  Maintains  normal  level  of  retinol,  Vitamin  A  binding  protein  and  thyroid   hormone  in  blood  plasma
  • 5. Essence  of  this  Research   o  By  studying  the  E54G    and  E54K  mutations  and  their  TTR  products,  a   comparison  can  be  made  with  wt  TTR  and  hence  the  importance  of  the   Glu54  residue  in  TTR.
  • 6. Methods  and  Approach Expression  and  Purification •  E54G/E54K  plasmids  prepared  using  site-­‐‑directed  mutagenesis •  Anion-­‐‑exchange  chromatography  and  reverse-­‐‑phase  HPLC CD  (Circular  dichroism)  TTR  stability  assay •  Incubated  in  0-­‐‑8M  Urea  at  25˚C  for  96h Tetramer-­‐‑monomer  transition  Assay •  100mM  KCl  induced  at  pH  3.5-­‐‑7 Another  TTR  stability  assay  based  on  T4  binding Thioflavin  T  binding  assay  after  incubation  with  KCl And…
  • 7. …X-­‐‑Ray  Crystallography  and   Structure  Determination o  Crystal  formation  10days  after  incubation  with  200  mM  citrate   buffer  and  3  M  ammonium  sulfate    pH  5.3 •  Steps  in  crystallographic  study o  Crystallization o  X-­‐‑ray  diffraction  pahern  and  raw  data  collection o  Refinement  of  data o  Compute  electron  density  map o  Build  and  refine  3D  model
  • 8.
  • 9. Results  and  Findings •  wt  TTR  and  E54G  TTR  have  similar  fractions  of  monomers/tetramers  at   indicated  pH •  E54K  TTR  has  significantly  more  monomer  formation  than  wt/E54G •   stability  based  on  urea  denaturation→  wild-­‐‑type  TTR  (Cm=3.54)>E54G   (Cm=3.05)>E54K  (Cm=2.58)
  • 10. •  Different  distances   between  the  two  54   residues  in  the  dimer-­‐‑ dimer  interface •  Distinct  surface   electrostatic  potential   around  residue  54
  • 11. •  Glu54  forms  a  hydrogen   bond  with  Lys15  and   His56,  stabilizing   positive  charge  of  Lys15 •  In  E54G,  a  water   molecule  mediates   interaction  between  S52   and  His56 •  In  E54K,  H-­‐‑bond  is   broken  and  K15/K54   causes  repulsion
  • 12. Amyloid  fibril  formation  and  stability  of  tetramer
  • 13. •  54  is  at  the  opening  of  the  T4  binding  pocket •  E54G  and  E54K  had  the  highest    and  lowest  T4  association and  dissociation  rates  respectively.
  • 14. Tetramer  stability  and  Amyloid  fibril   formation  in  the  presence  of  T4 •  wt  TTR  :  12.18  monomer  ratio   •  monomer  level  of  E54G  TTR  was  34.43 •  monomer  level  of  E54K  TTR  was  92.18  
  • 15. What  do  these  findings  tell  us?? •  wild-­‐‑type  and  Glu54  TTR  variants  have  significantly  different   side  chain  interactions  and  surface  electrostatic  potential   around  residue  54 •  Glu54  modulates  the  positive  charge  of  Lys15  and  hence   minimizes  the  repulsion  between  K15  of  the  two  monomers   which  stabilizes  the  tetramer •  The  change  of  residue  54  in  the  TTR  variants  affects  T4  binding   and  hence  decreased  T4  binding  increases  tetramer  instability
  • 16. Closing  thoughts •  Various  FAP  associated  mutations  lead  to  TTR  tetramer   instability  and  hence  favoring  amyloidogenises •  Could  another  residue  besides  Glu54  (wt)  stabilize  the   tetramer? •  T4  binding  studies  using  these  residues  located  in  the   pocket,  show  that  binding  affinity  is  important  to  tetramer   stability •  Small  molecules  are  in  the  process  of  being  developed  that   can  appropriately  bind  to  this  pocket  with  high  affinity  and   decrease  fibril  formation
  • 17. Acknowledgements I  would  like  to  thank  HaiYan  Zhao  and  Dr.  Tang  for   crystallography  expertise.  I  would  also  like  to  thank   Shyam  Mehta  for  giving  me  useful  tips  for  this   presentation.
  • 18. References •  Miyata  et.  al.  (2010)  Role  of  the  Glutamic  Acid  54  Residue  in  Transthyretin   Stability  and  Thyroxine  Binding.  Biochemistry  2010,  49,  114–123. •  Ando,  Y.,  Araki,  S.,  and  Ando,  M.  (1993)  Transthyretin  and  familial   amyloidotic  polyneuropathy.  Intern.  Med.  32,  920–922. •  Miroy,  G.  J.,  Lai,  Z.,  Lashuel,  H.  A.,  Peterson,  S.  A.,  Strang,  C.,  and  Kelly,  J.   W.  (1996)  Inhibiting  transthyretin  amyloid  fibril  formation  via  protein   stabilization.  Proc.  Natl.  Acad.  Sci.  U.S.A.  93,  15051–15056. •  Miroy,  G.  J.,  Lai,  Z.,  Lashuel,  H.  A.,  Peterson,  S.  A.,  Strang,  C.,  and  Kelly,  J.   W.  (1996)  Inhibiting  transthyretin  amyloid  fibril  formation  via  protein   stabilization.  Proc.  Natl.  Acad.  Sci.  U.S.A.  93,  15051–15056. •  <hhp://www.iupui.edu/~amyloid/information.htm> •  <hhp://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=gene&part=tfap> •  <hhp://ghr.nlm.nih.gov/condition=transthyretinamyloidosis>
  • 19. { Questions  and  Comments? Thank  You  and  Happy   Cinqo  de  Mayo!!