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Method of Nuclear Magnetic
Resonance Spectroscopy for
application in bio-medical
research
Dr. Tamar Chachibaia, MD, PhD,
Assistant Professor
25 March 2016
BAU International University, Batumi
• Introduction
• Fundamental principles and theory
• Instrumentation
• Solvents in NMR spectroscopy
• Chemical shift
• Interpretation of Proton chemical shifts
• Applications NMR spectra
Introduction
• Nuclear magnetic resonance, or NMR is a phenomenon
which occurs when the nuclei of certain atoms are
immersed in a static magnetic field and exposed to a
second oscillating magnetic field. Some nuclei
experience this phenomenon, and others do not,
dependent upon whether they possess a property called
spin.
• The first nuclear magnetic resonance (NMR) was
detected early in 1938 in a molecular beam, and the first
studies of NMR in bulk materials were carried out about
8 years later.
• In 1952 F. Bloch and E. Purcel were awarded by the
Nobel Prize.
The Nobel Prize in Physics 1952 was awarded jointly to Felix
Bloch and Edward Mills Purcell "for their development of new
methods for nuclear magnetic precision measurements and
discoveries in connection therewith"
Nuclear Magnetic Resonance (NMR) is a spectroscopy
technique
NMR spectroscops
• Varian Inova
750 (CACTUS)
• HCN (1H /13C /
15N) –
• http://www.usc.es/g
l/investigacion/riaidt
/rm/rmn/modules/e
quipamento/equipa
mento_0008.html
• Bruker DRX-
500 (CACTUS)
• 1H/13C/15N
http://www.usc.es/g
l/investigacion/riaidt
/rm/rmn/modules/e
quipamento/equipa
mento_0007.html
How to prepare sample for analysis
Open - GOM-Player
• Refilling_Nitrogen_in_BRUKER_Magnets_
V10_720p
• Nucleus with spin I=0 in magnetic field
(Bo) is rotating in the direction of axis. In
case of spin I=1/2, are aligned clockwise
or counterclockwise to the Bo.
Spin
Nuclei with Spin
• The shell model for the nucleus tells us that nucleons,
just like electrons, fill orbitals. When the number of
protons or neutrons equals 2, 8, 20, 28, 50, 82, and 126,
orbitals are filled. Because nucleons have spin, just like
electrons do, their spin can pair up when the orbitals are
being filled and cancel out. Almost every element in the
periodic table has an isotope with a non zero nuclear
spin.
• NMR can only be performed on isotopes whose natural
abundance is high enough to be detected.
• Some of the nuclei routinely used in NMR are listed
below.
Nuclei with Spin
Nuclei
Unpaired
Protons
Unpaired
Neutrons
Net
Spin
γ
(MHz/
T)
1
H 1 0 1/2 42.58
2
H 1 1 1 6.54
31
P 1 0 1/2 17.25
23
Na 1 2 3/2 11.27
14
N 1 1 1 3.08
13
C 0 1 1/2 10.71
19
F 1 0 1/2 40.08
Spin and other characteristics of main nuclei
How to convert signal to spectra
• As a result of impulse spectroscopy it is possible to obtain not only
the usual spectrum with visible peaks of resonance, but the image of
damped resonant oscillations, in which the signals are mixed from
all the resonant nuclei. It is called the free induction decay (FID). In
order to convert this spectrum, it is necessary to use mathematical
methods, the so-called ourier transformation, by which any function
can be represented as the sum of the set of harmonic oscillations.
• In other words, "the required acquisition time depends on the
smallest line width in the spectrum, and truncation of the NMR
signal in the time domain [free induction decay (FID)] must be
avoided.
• If truncation occurs, signal forms with (substantial) "wiggles" appear
in the spectra, and, in combination with FID baseline correction
modes, wrong intensities will result" (Diehl et al., 16).
FID
(http://www.sci.utu.fi/kemia/tutkimus/l
aitekeskus).
Recommended readings :
Thank you! Questions?

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Method of nuclear magnetic resonance spectroscopy  for application

  • 1. Method of Nuclear Magnetic Resonance Spectroscopy for application in bio-medical research Dr. Tamar Chachibaia, MD, PhD, Assistant Professor 25 March 2016 BAU International University, Batumi
  • 2. • Introduction • Fundamental principles and theory • Instrumentation • Solvents in NMR spectroscopy • Chemical shift • Interpretation of Proton chemical shifts • Applications NMR spectra
  • 3. Introduction • Nuclear magnetic resonance, or NMR is a phenomenon which occurs when the nuclei of certain atoms are immersed in a static magnetic field and exposed to a second oscillating magnetic field. Some nuclei experience this phenomenon, and others do not, dependent upon whether they possess a property called spin. • The first nuclear magnetic resonance (NMR) was detected early in 1938 in a molecular beam, and the first studies of NMR in bulk materials were carried out about 8 years later. • In 1952 F. Bloch and E. Purcel were awarded by the Nobel Prize.
  • 4. The Nobel Prize in Physics 1952 was awarded jointly to Felix Bloch and Edward Mills Purcell "for their development of new methods for nuclear magnetic precision measurements and discoveries in connection therewith"
  • 5.
  • 6. Nuclear Magnetic Resonance (NMR) is a spectroscopy technique
  • 7.
  • 8. NMR spectroscops • Varian Inova 750 (CACTUS) • HCN (1H /13C / 15N) – • http://www.usc.es/g l/investigacion/riaidt /rm/rmn/modules/e quipamento/equipa mento_0008.html • Bruker DRX- 500 (CACTUS) • 1H/13C/15N http://www.usc.es/g l/investigacion/riaidt /rm/rmn/modules/e quipamento/equipa mento_0007.html
  • 9. How to prepare sample for analysis
  • 10. Open - GOM-Player • Refilling_Nitrogen_in_BRUKER_Magnets_ V10_720p
  • 11. • Nucleus with spin I=0 in magnetic field (Bo) is rotating in the direction of axis. In case of spin I=1/2, are aligned clockwise or counterclockwise to the Bo.
  • 12. Spin
  • 13.
  • 14. Nuclei with Spin • The shell model for the nucleus tells us that nucleons, just like electrons, fill orbitals. When the number of protons or neutrons equals 2, 8, 20, 28, 50, 82, and 126, orbitals are filled. Because nucleons have spin, just like electrons do, their spin can pair up when the orbitals are being filled and cancel out. Almost every element in the periodic table has an isotope with a non zero nuclear spin. • NMR can only be performed on isotopes whose natural abundance is high enough to be detected. • Some of the nuclei routinely used in NMR are listed below.
  • 15. Nuclei with Spin Nuclei Unpaired Protons Unpaired Neutrons Net Spin γ (MHz/ T) 1 H 1 0 1/2 42.58 2 H 1 1 1 6.54 31 P 1 0 1/2 17.25 23 Na 1 2 3/2 11.27 14 N 1 1 1 3.08 13 C 0 1 1/2 10.71 19 F 1 0 1/2 40.08
  • 16. Spin and other characteristics of main nuclei
  • 17.
  • 18.
  • 19.
  • 20.
  • 21. How to convert signal to spectra • As a result of impulse spectroscopy it is possible to obtain not only the usual spectrum with visible peaks of resonance, but the image of damped resonant oscillations, in which the signals are mixed from all the resonant nuclei. It is called the free induction decay (FID). In order to convert this spectrum, it is necessary to use mathematical methods, the so-called ourier transformation, by which any function can be represented as the sum of the set of harmonic oscillations. • In other words, "the required acquisition time depends on the smallest line width in the spectrum, and truncation of the NMR signal in the time domain [free induction decay (FID)] must be avoided. • If truncation occurs, signal forms with (substantial) "wiggles" appear in the spectra, and, in combination with FID baseline correction modes, wrong intensities will result" (Diehl et al., 16).
  • 22. FID
  • 23.
  • 25.
  • 26.
  • 27.
  • 28.
  • 29.
  • 30.
  • 31.
  • 32.
  • 33.
  • 34.
  • 35.
  • 36.
  • 37.
  • 39.

Notas del editor

  1. •Introduction -Spin-spin Coupling •Fundamental principles and theory -Coupling constant Powerpoint Templates Page 2 •Instrumentation -2D-NMR •Solvents -NOE •Chemical shift -NOESY •Factors affecting chemical shift -COSY •Interpretation of proton -Applications NMR spectra •Proton chemical shifts
  2. Nuclear Magnetic Resonance (NMR) is a spectroscopy technique which is based on the absorption of electromagnetic radiation in the radio frequency region 4 to 900 MHz by nuclei of the atoms. Proton Nuclear magnetic resonance spectroscopy is one of the most powerful tools for elucidating the number of hydrogen or proton in the compound. It is used to study a wide variety of nuclei: • 1H 15N • 19F 19F •13C 31P
  3. Theory of NMR: - Spin quantum number (I) is related to the atomic and mass number of the nucleus. Elements with either odd mass or odd atomic number have the property of nuclear “spin”.
  4. If an external magnetic field is applied, the number of possible orientations calculated by (2I+1). Hydrogen has spin quantum number I=1/2 and possible orientation is (2*1/2+1=2) two +1/2 and -1/2.
  5. Principles of NMR 6 The theory behind NMR comes from the spin of a nucleus and it generates a magnetic field. Without an external applied magnetic field, the nuclear spins are random in directions. But when an external magnetic field(Bo), is present the nuclei align themselves either with or against the field of the external magnet.
  6. If an external magnetic field is applied, an energy transfer (ΔE) is possible between ground state to excited state. when the spin returns to its ground state level, the absorbed radiofrequency energy is emitted at the same frequency level. The emitted radiofrequency signal that give the NMR spectrum of the concerned nucleus. .
  7. NMR spectrum The NMR spectrum is a plot of intensity of NMR signals VS magnetic field (frequency) in reference to TMS
  8. NMR instrumentation 1. Sample holder 4. Sweep generator 2. Permanent magnet 5. Radio frequency transmitter 3. Magnetic coils 6. Radio frequency receiver 7.Read out systems
  9. Sample holder :- Glass tube with 8.5 cm long,0.3 cm 11 in diameter 2.Permanent magnet :- It provides homogeneous magnetic field at 60-100 MHZ 3.Magnetic coils :- These coils induce magnetic field when current flows through them. 4.Sweep generator :- To produce the equal amount of magnetic field pass through the sample
  10. 5.Radio frequency transmitter :- A radio transmitter coil that produces a short powerful pulse of radio waves 6.Radiofrequency Receiver :- A radio receiver coil that detects radio frequencies emitted as nuclei relax to a lower energy level 7.Readout system :- A computer that analyses and record the data
  11. Solvents used in NMR The following solvents are normally used in which hydrogen replaced by deuterium. CCl4 - carbon tetrachloride CS2 - carbon disulfide CDCl3 - Deuteriochloroform C6D6 - Hexa deuteriobenzene D2O - Deuterium oxide
  12. Chemical shift A chemical shift is defined as the difference in parts per million (ppm) between the resonance frequency of the observed proton and tetramethylsilane (TMS) hydrogens. TMS is the most common reference compound in NMR, it is set at δ=0 ppm
  13. Proton NMR The most common for of NMR is based on the hydrogen-1 (1H), nucleus or proton. It can give information about the structure of any molecule containing hydrogen atoms.
  14. Proton NMR spectra of Ethanol:- 1H spectrum of Ethanol:- 3 types of proton CH3,CH2,OH
  15. 1H NMR spectra of Benzene • Aromatic Hydrogen shows peak in the chemical shift scale 6.5-8.0 ppm. • From the above spectrum Benzene has same type of protons and it shows single peak at 7.26
  16. Interpretation of 1HNMR spectra:- Number of signals - Indicates how many "different kinds" of protons are present. Position of signals - Indicates something about (chemical shift) magnetic (electronic) environment of protons Relative intensity of signals – Proportional to number of protons present Splitting of signals - Indicates the number of nearby nuclei (spin spin coupling) usually protons