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Instituto Superior Técnico
       2009/2010




           Mestrado em Bioengenharia e Nanossistemas




                                    Projecto Integrado I




David Conceição nº64405
Gene delivery/therapy                                                  Gene
                                                                     delivery/therapy


                                                                         Magneto-
 Gene therapy is a technique for correcting defective                     fection
 genes responsible for disease development.

                                                                          HEK293
                                                                          cell line
              A carrier molecule called a vector must be used to
              deliver the therapeutic gene to the patient's target
                                                                           Cell
              cells.
                                                                          culture


                                                                       Plasmid DNA
                  protect the transgene against degradation by        transfection
                 nucleases in intercellular matrices;
                                                                        Results &
3 major           bring the transgene across the plasma
                                                                        Discussion
criteria         membrane and into the nucleus of target cells;

                  no detrimental effects                               Conclusion



                                                 Projecto Integrado I, July 2010
Gene delivery/therapy                                               Gene
                                                              delivery/therapy


                        Viral vectors                             Magneto-
                                                                   fection

                                         Retroviruses;
                                                                   HEK293
                                                                   cell line
                                         Adenoviruses;

                                          Adeno-associated          Cell
                                viruses (AAV);                     culture

                                          Herpes    simplex
                                viruses (HSV)                   Plasmid DNA
                                                                transfection


                                                                 Results &
                                                                 Discussion
    Efficient gene transfer;
    Host’s reaction;                                             Conclusion
    Unfavorable Pharmaceutical issue-large scale production


                                          Projecto Integrado I, July 2010
Gene delivery/therapy                                                    Gene
                                                                    delivery/therapy


                             Non-Viral vectors                          Magneto-
                                                                         fection


                                                                         HEK293
Physical methods (carrier-free gene delivery)
                                                                         cell line


                                                                          Cell
                                                                         culture
Chemical methods (synthetic vector-based gene delivery

                                                                      Plasmid DNA
                                                                      transfection


                                                                       Results &
                                                                       Discussion


                                                                       Conclusion



                                                Projecto Integrado I, July 2010
Gene delivery/therapy                              Gene
                                             delivery/therapy


               Non-Viral vectors                 Magneto-
                                                  fection


                                                  HEK293
                                                  cell line


                                                   Cell
                                                  culture


                                               Plasmid DNA
                                               transfection


                                                Results &
                                                Discussion


                                                Conclusion



                         Projecto Integrado I, July 2010
Magnetofection                                                          Gene
                                                                      delivery/therapy


                                                                          Magneto-
                                                                           fection


                                                                           HEK293
                                                                           cell line


                                                                            Cell
                                                                           culture


                                                                        Plasmid DNA
                                                                        transfection
A magnetic force aroused     from a magnetic field applied among
magnetic particles and a magnetofactor plate induces a bigger            Results &
                                                                         Discussion
attraction between cells and the nucleic acids, or transfection
reagents or virus associated with magnetic particles, targeting the      Conclusion
gene delivery without changing much the standard protocol.

                                                  Projecto Integrado I, July 2010
Magnetofection                                                             Gene
                                                                          delivery/therapy


                                                                              Magneto-
                                                                               fection


                                                                               HEK293
                                                                               cell line


                                                                                Cell
                                                                               culture


                                       Usable with all types of nucleic     Plasmid DNA
                                       acids (plasmid DNA, RNA, siRNA,      transfection
                                       ODN)

                                                                             Results &
                                       Designed to be associated with        Discussion
                                       viruses,  or     with    another
                                       commercial transfection reagent
                                                                             Conclusion
These     magnetofection      reagents are
composed with magnetic nanoparticles
associated with a proprietary polymer
                                                 Projecto Integrado I, July 2010
HEK293 cell line                                              Gene
                                                             delivery/therapy


                                                                 Magneto-
                                                                  fection
Human embryonic kidney cells
                                                                  HEK293
                                                                  cell line
Transformation and culturing of
 normal HEK cells with sheared
                                                                   Cell
       adenovirus 5 DNA                                           culture


                                                               Plasmid DNA
   Incorporation of approximately 4.5                          transfection
  kilobases from the viral genome into
 human chromosome 19 of the HEK cells
                                                                Results &
                                                                Discussion

   The name HEK293 is thusly named
                                                                Conclusion
  because it was Frank Graham's 293rd
              experiment

                                         Projecto Integrado I, July 2010
Cell culture                                    Gene
                                                 delivery/therapy


                                                     Magneto-
   Laminar Flow Hood                                  fection

   Medium bottles
                                                      HEK293
   T flasks                                           cell line

   Well plates
                                                       Cell
   Pipettes                                           culture
   Etc,
                                                   Plasmid DNA
                                                   transfection
Culture medium:
Dulbecco's Modified Eagle
                                                    Results &
Medium (DMEM) high                                  Discussion
glucose (4.5 g/l), 10%
fetal bovine serum (FBS),                           Conclusion
1% penicillin/streptomycin
(100 μg/ml) (Invitrogen)
                             Projecto Integrado I, July 2010
Cell culture                                                           Gene
                                                                 delivery/therapy


                                                                     Magneto-
                                                                      fection


                                                                      HEK293
                                                                      cell line


                                                                       Cell
                                                                      culture


                                                                   Plasmid DNA
                                                                   transfection


                                                                    Results &
                                                                    Discussion

               *- Trypan blue is the most common stain used to
               distinguish viable cells from nonviable cells;       Conclusion
               - Neubauer hemacytometer



                                         Projecto Integrado I, July 2010
Plasmid DNA transfection                                          Gene
                                                            delivery/therapy


                 Plasmid                                        Magneto-
                                                                 fection


            Vector carrier of the transgene of interest:         HEK293
                                                                 cell line
                                 - pcDNA 3.1 (Invitrogen)

                                                                  Cell
            Identification    and   measurement    of   the      culture

            fluorescence level by flow cytometry using
                                                              Plasmid DNA
            FACSCalibur      equipment (BD Biosciences)     - transfection
            Fluorescence Activated Cell Sorting
                                                               Results &
                                                               Discussion


                                                               Conclusion



                                     Projecto Integrado I, July 2010
Plasmid DNA transfection                                                       Gene
                                                                               delivery/therapy


                                      With lipofectamine                           Magneto-
                                                                                    fection


                                                                                    HEK293
                                                                                    cell line


                                                                                     Cell
                                                                                    culture


                                                                                 Plasmid DNA
                                                                                 transfection

  - Complexes were prepared        using a DNA (µg) to Lipofectamine™ 2000
  (Invitrogen) (µl) ratio of 1:2                                                  Results &
                                                                                  Discussion
              49 µl of Opti-MEM and 1 µl of DNA solution
 20 min of
incubation    48 µl of Opti-MEM and 2 µl of Lipofectamine (with 5 min of          Conclusion
              incubation)

             18-48h of incubation in the CO2 incubator
                                                           Projecto Integrado I, July 2010
Plasmid DNA transfection                                                          Gene
                                                                                delivery/therapy


                                    With PolyMAG                                    Magneto-
                                                                                     fection


                                                                                     HEK293
                                                                                     cell line


                                                                                      Cell
                                                                                     culture


                                                                                  Plasmid DNA
                                                                                  transfection

The proper amount of DNA (1 µg = 1 µl of DNA plasmid solution) was diluted in
200 µl of Opti-MEM® I Medium                                                       Results &
                                                                                   Discussion
This solution was then added to the eppendorf containig 0.5 µl of PolyMAG
and mixed gently before a 15 minutes incubation
                                                                                   Conclusion
DNA-PolyMAG complexes were added to each well containing cells and Opti-
MEM® I Medium, and the plate was put over the magnetofector plate

           30 min of incubation in the CO2 incubator     Projecto Integrado I, July 2010
Plasmid DNA transfection                                                           Gene
                                                                                    delivery/therapy


                                      With CombiMAG                                     Magneto-
                                                                                         fection


                                                                                         HEK293
                                                                                         cell line


                                                                                          Cell
                                                                                         culture


                                                                                      Plasmid DNA
                                                                                      transfection


      Lipoplexes were formed as it was described previously                            Results &
                                                                                       Discussion
      Lipoplexes were added to an eppendorf containing 0.5 µl of CombiMAG

                                                         15 minutes of incubation      Conclusion
The plate was put onto the magnetofactor plate and
was left in the incubator for 30 minutes

                                                              Projecto Integrado I, July 2010
Plasmid DNA transfection                                            Gene
                                                              delivery/therapy


                        FACS analysis                             Magneto-
                                                                   fection


                             -Re-suspension of cells and           HEK293
                             centrifugation;                       cell line


                             - Cell counting;                       Cell
                                                                   culture

                                    Trypsin
                                                                Plasmid DNA
                                                PBS             transfection


                                                                 Results &
                                                                 Discussion

Cells transferred to FACS tubes and subsequent analysis
                                                                 Conclusion



                                          Projecto Integrado I, July 2010
Results & Discussion                                                              Gene
                                                                                delivery/therapy


                                                                                    Magneto-
                                                                                     fection


                                                                                     HEK293
                                                                                     cell line


                                                                                      Cell
                                                                                     culture
                                 Control group for toxicity effects
                                                                                  Plasmid DNA
                                                                                  transfection
                Histogram plots of the fluorescence signal carried by
                the analyzed cells
                                                                                   Results &
FACS analysis                                YFP-negative and positive cells:      Discussion
                                                       M2 and M1

                Mean value of fluorescence                                         Conclusion



                                                     Projecto Integrado I, July 2010
Results & Discussion                                                 Gene
                                                                delivery/therapy


                                                                    Magneto-
                                                                     fection
With lipofectamine

                                                                     HEK293
                                                                     cell line


                                                                      Cell
                                                                     culture


                                                                  Plasmid DNA
                                                                  transfection


                                                                   Results &
                                                                   Discussion
      %Gated cells (in M1): 61,84

                                                                   Conclusion
      Mean value of fluorescence: 5865,26


                                            Projecto Integrado I, July 2010
Results & Discussion                                                 Gene
                                                                delivery/therapy


                                                                    Magneto-
                                                                     fection
With polyMAG

                                                                     HEK293
                                                                     cell line


                                                                      Cell
                                                                     culture


                                                                  Plasmid DNA
                                                                  transfection


                                                                   Results &
                                                                   Discussion
     %Gated cells (in M1): 22,47

                                                                   Conclusion
      Mean value of fluorescence: 4245,55


                                            Projecto Integrado I, July 2010
Results & Discussion                                                Gene
                                                               delivery/therapy


                                                                   Magneto-
                                                                    fection
With CombiMAG

                                                                    HEK293
                                                                    cell line


                                                                     Cell
                                                                    culture


                                                                 Plasmid DNA
                                                                 transfection


                                                                  Results &
                                                                  Discussion
     %Gated cells (in M1): 46,71

                                                                  Conclusion
     Mean value of fluorescence: 5156,33


                                           Projecto Integrado I, July 2010
Results & Discussion                              Gene
                                               delivery/therapy


                                                   Magneto-
                                                    fection


Transfection efficiency,                            HEK293
   Cell Viability, Cell                             cell line
  Recovery and Yield
                                                     Cell
                                                    culture


                                                 Plasmid DNA
                                                 transfection


                                                  Results &
                                                  Discussion


                                                  Conclusion



                           Projecto Integrado I, July 2010
Results & Discussion                                                          Gene
                                                                              delivery/therapy


                                                                                  Magneto-
  Lipoplexes and CombiMAG complexes have the more intense                          fection
  level of fluorescence thereby having the higher level of protein
  expression, and also the bigger amount of YFP positive cells                     HEK293
                                                                                   cell line

Scherer et al, proposed the use of magnetofection using its
associated concepts such the magnetic force to improve the                          Cell
DNA attraction to cells                                                            culture


                                                                                Plasmid DNA
                                                                                transfection


                                                                                 Results &
                                                                                 Discussion


                                                                                 Conclusion



                                                          Projecto Integrado I, July 2010
Results & Discussion                                                                Gene
                                                                                 delivery/therapy


Magnetofection does not necessarily improve the overall performance of a             Magneto-
given standard gene transfer method in vitro, but its major advantage consists        fection

on the possibility of remotely controlled vector targeting in vivo
                                                                                      HEK293
                                                                                      cell line

                                                       As Wang et al proposed,
                                                       the    preparation   of         Cell
                                                       magnetic nanoparticles         culture
                                                       with other transfection
                                                       reagents like cationic
                                                                                   Plasmid DNA
                                                       polymers or cationic        transfection
                                                       liposomes could be a
                                                       great solution.
                                                                                    Results &
                                                                                    Discussion


                                                                                    Conclusion



                                                           Projecto Integrado I, July 2010
Conclusion                                                           Gene
                                                               delivery/therapy


                                                                   Magneto-
                                                                    fection
CombiMAG nanoparticles associated with lipoplexes gives
interesting results (specially for a possible application in        HEK293
                                                                    cell line
in vivo gene delivery with enhanced targeting).
                                                                     Cell
                                                                    culture
Regarding cell viability, PolyMAG exhibited significant
improval towards the other methods
                                                                 Plasmid DNA
                                                                 transfection

This work gives a general readout for potential benefits
and disadvantages but, for more coherent conclusions,             Results &
                                                                  Discussion
much more data must be collected

                                                                  Conclusion



                                           Projecto Integrado I, July 2010
Additional features                                Gene
                                             delivery/therapy


                                                 Magneto-
                                                  fection


                                                  HEK293
                                                  cell line


                                                   Cell
                                                  culture


                                               Plasmid DNA
                                               transfection


                                                Results &
                                                Discussion


                                                Conclusion



In vivo magnetofection   Projecto Integrado I, July 2010

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Presentation Gene Delivery

  • 1. Instituto Superior Técnico 2009/2010 Mestrado em Bioengenharia e Nanossistemas Projecto Integrado I David Conceição nº64405
  • 2. Gene delivery/therapy Gene delivery/therapy Magneto- Gene therapy is a technique for correcting defective fection genes responsible for disease development. HEK293 cell line A carrier molecule called a vector must be used to deliver the therapeutic gene to the patient's target Cell cells. culture Plasmid DNA  protect the transgene against degradation by transfection nucleases in intercellular matrices; Results & 3 major  bring the transgene across the plasma Discussion criteria membrane and into the nucleus of target cells;  no detrimental effects Conclusion Projecto Integrado I, July 2010
  • 3. Gene delivery/therapy Gene delivery/therapy Viral vectors Magneto- fection Retroviruses; HEK293 cell line Adenoviruses; Adeno-associated Cell viruses (AAV); culture Herpes simplex viruses (HSV) Plasmid DNA transfection Results & Discussion Efficient gene transfer; Host’s reaction; Conclusion Unfavorable Pharmaceutical issue-large scale production Projecto Integrado I, July 2010
  • 4. Gene delivery/therapy Gene delivery/therapy Non-Viral vectors Magneto- fection HEK293 Physical methods (carrier-free gene delivery) cell line Cell culture Chemical methods (synthetic vector-based gene delivery Plasmid DNA transfection Results & Discussion Conclusion Projecto Integrado I, July 2010
  • 5. Gene delivery/therapy Gene delivery/therapy Non-Viral vectors Magneto- fection HEK293 cell line Cell culture Plasmid DNA transfection Results & Discussion Conclusion Projecto Integrado I, July 2010
  • 6. Magnetofection Gene delivery/therapy Magneto- fection HEK293 cell line Cell culture Plasmid DNA transfection A magnetic force aroused from a magnetic field applied among magnetic particles and a magnetofactor plate induces a bigger Results & Discussion attraction between cells and the nucleic acids, or transfection reagents or virus associated with magnetic particles, targeting the Conclusion gene delivery without changing much the standard protocol. Projecto Integrado I, July 2010
  • 7. Magnetofection Gene delivery/therapy Magneto- fection HEK293 cell line Cell culture Usable with all types of nucleic Plasmid DNA acids (plasmid DNA, RNA, siRNA, transfection ODN) Results & Designed to be associated with Discussion viruses, or with another commercial transfection reagent Conclusion These magnetofection reagents are composed with magnetic nanoparticles associated with a proprietary polymer Projecto Integrado I, July 2010
  • 8. HEK293 cell line Gene delivery/therapy Magneto- fection Human embryonic kidney cells HEK293 cell line Transformation and culturing of normal HEK cells with sheared Cell adenovirus 5 DNA culture Plasmid DNA Incorporation of approximately 4.5 transfection kilobases from the viral genome into human chromosome 19 of the HEK cells Results & Discussion The name HEK293 is thusly named Conclusion because it was Frank Graham's 293rd experiment Projecto Integrado I, July 2010
  • 9. Cell culture Gene delivery/therapy Magneto- Laminar Flow Hood fection Medium bottles HEK293 T flasks cell line Well plates Cell Pipettes culture Etc, Plasmid DNA transfection Culture medium: Dulbecco's Modified Eagle Results & Medium (DMEM) high Discussion glucose (4.5 g/l), 10% fetal bovine serum (FBS), Conclusion 1% penicillin/streptomycin (100 μg/ml) (Invitrogen) Projecto Integrado I, July 2010
  • 10. Cell culture Gene delivery/therapy Magneto- fection HEK293 cell line Cell culture Plasmid DNA transfection Results & Discussion *- Trypan blue is the most common stain used to distinguish viable cells from nonviable cells; Conclusion - Neubauer hemacytometer Projecto Integrado I, July 2010
  • 11. Plasmid DNA transfection Gene delivery/therapy Plasmid Magneto- fection Vector carrier of the transgene of interest: HEK293 cell line - pcDNA 3.1 (Invitrogen) Cell Identification and measurement of the culture fluorescence level by flow cytometry using Plasmid DNA FACSCalibur equipment (BD Biosciences) - transfection Fluorescence Activated Cell Sorting Results & Discussion Conclusion Projecto Integrado I, July 2010
  • 12. Plasmid DNA transfection Gene delivery/therapy With lipofectamine Magneto- fection HEK293 cell line Cell culture Plasmid DNA transfection - Complexes were prepared using a DNA (µg) to Lipofectamine™ 2000 (Invitrogen) (µl) ratio of 1:2 Results & Discussion 49 µl of Opti-MEM and 1 µl of DNA solution 20 min of incubation 48 µl of Opti-MEM and 2 µl of Lipofectamine (with 5 min of Conclusion incubation) 18-48h of incubation in the CO2 incubator Projecto Integrado I, July 2010
  • 13. Plasmid DNA transfection Gene delivery/therapy With PolyMAG Magneto- fection HEK293 cell line Cell culture Plasmid DNA transfection The proper amount of DNA (1 µg = 1 µl of DNA plasmid solution) was diluted in 200 µl of Opti-MEM® I Medium Results & Discussion This solution was then added to the eppendorf containig 0.5 µl of PolyMAG and mixed gently before a 15 minutes incubation Conclusion DNA-PolyMAG complexes were added to each well containing cells and Opti- MEM® I Medium, and the plate was put over the magnetofector plate 30 min of incubation in the CO2 incubator Projecto Integrado I, July 2010
  • 14. Plasmid DNA transfection Gene delivery/therapy With CombiMAG Magneto- fection HEK293 cell line Cell culture Plasmid DNA transfection Lipoplexes were formed as it was described previously Results & Discussion Lipoplexes were added to an eppendorf containing 0.5 µl of CombiMAG 15 minutes of incubation Conclusion The plate was put onto the magnetofactor plate and was left in the incubator for 30 minutes Projecto Integrado I, July 2010
  • 15. Plasmid DNA transfection Gene delivery/therapy FACS analysis Magneto- fection -Re-suspension of cells and HEK293 centrifugation; cell line - Cell counting; Cell culture Trypsin Plasmid DNA PBS transfection Results & Discussion Cells transferred to FACS tubes and subsequent analysis Conclusion Projecto Integrado I, July 2010
  • 16. Results & Discussion Gene delivery/therapy Magneto- fection HEK293 cell line Cell culture Control group for toxicity effects Plasmid DNA transfection Histogram plots of the fluorescence signal carried by the analyzed cells Results & FACS analysis YFP-negative and positive cells: Discussion M2 and M1 Mean value of fluorescence Conclusion Projecto Integrado I, July 2010
  • 17. Results & Discussion Gene delivery/therapy Magneto- fection With lipofectamine HEK293 cell line Cell culture Plasmid DNA transfection Results & Discussion %Gated cells (in M1): 61,84 Conclusion Mean value of fluorescence: 5865,26 Projecto Integrado I, July 2010
  • 18. Results & Discussion Gene delivery/therapy Magneto- fection With polyMAG HEK293 cell line Cell culture Plasmid DNA transfection Results & Discussion %Gated cells (in M1): 22,47 Conclusion Mean value of fluorescence: 4245,55 Projecto Integrado I, July 2010
  • 19. Results & Discussion Gene delivery/therapy Magneto- fection With CombiMAG HEK293 cell line Cell culture Plasmid DNA transfection Results & Discussion %Gated cells (in M1): 46,71 Conclusion Mean value of fluorescence: 5156,33 Projecto Integrado I, July 2010
  • 20. Results & Discussion Gene delivery/therapy Magneto- fection Transfection efficiency, HEK293 Cell Viability, Cell cell line Recovery and Yield Cell culture Plasmid DNA transfection Results & Discussion Conclusion Projecto Integrado I, July 2010
  • 21. Results & Discussion Gene delivery/therapy Magneto- Lipoplexes and CombiMAG complexes have the more intense fection level of fluorescence thereby having the higher level of protein expression, and also the bigger amount of YFP positive cells HEK293 cell line Scherer et al, proposed the use of magnetofection using its associated concepts such the magnetic force to improve the Cell DNA attraction to cells culture Plasmid DNA transfection Results & Discussion Conclusion Projecto Integrado I, July 2010
  • 22. Results & Discussion Gene delivery/therapy Magnetofection does not necessarily improve the overall performance of a Magneto- given standard gene transfer method in vitro, but its major advantage consists fection on the possibility of remotely controlled vector targeting in vivo HEK293 cell line As Wang et al proposed, the preparation of Cell magnetic nanoparticles culture with other transfection reagents like cationic Plasmid DNA polymers or cationic transfection liposomes could be a great solution. Results & Discussion Conclusion Projecto Integrado I, July 2010
  • 23. Conclusion Gene delivery/therapy Magneto- fection CombiMAG nanoparticles associated with lipoplexes gives interesting results (specially for a possible application in HEK293 cell line in vivo gene delivery with enhanced targeting). Cell culture Regarding cell viability, PolyMAG exhibited significant improval towards the other methods Plasmid DNA transfection This work gives a general readout for potential benefits and disadvantages but, for more coherent conclusions, Results & Discussion much more data must be collected Conclusion Projecto Integrado I, July 2010
  • 24. Additional features Gene delivery/therapy Magneto- fection HEK293 cell line Cell culture Plasmid DNA transfection Results & Discussion Conclusion In vivo magnetofection Projecto Integrado I, July 2010