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Using	
  vegeta+on	
  maps	
  to	
  infer	
  the	
  suitability	
  
           domain	
  of	
  useful	
  tree	
  species	
  
                  Roeland	
  KINDT,	
  ecologist	
  
              World	
  Agroforestry	
  Centre	
  (ICRAF)	
  
            (h>p://www.worldagroforestry.org/	
  )	
  
World	
  Agroforestry	
  Centre	
  
           (h>p://www.worldagroforestry.org/	
  )	
  

                                                                        Collaborative programmes
                                                                        in different ecoregions



                                                                        Trees in forests and on
                                                                        farms




Agroforestry	
  is	
  a	
  dynamic,	
  ecologically-­‐based,	
  
natural	
  resource	
  management	
  pracHce	
  that,	
  
through	
  the	
  integraHon	
  of	
  trees	
  on	
  farms	
  and	
  
in	
  the	
  agricultural	
  landscape,	
  diversifies	
  and	
  
sustains	
  producHon	
  for	
  increased	
  social,	
  
economic	
  and	
  environmental	
  benefits.	
  
Some	
  of	
  the	
  most	
  fundamental	
  contribuHons	
  
of	
  trees	
  in	
  fields,	
  farming	
  landscapes	
  and	
  
forests	
  are	
  as	
  direct	
  inputs	
  to	
  the	
  livelihoods	
  
of	
  resource-­‐poor	
  rural	
  people.	
  Appropriately	
  
managed	
  trees	
  help	
  diversify	
  rural	
  
livelihoods	
  and	
  contribute	
  to	
  the	
  
sustainability	
  of	
  agricultural	
  producHon	
  
through	
  Hghter	
  nutrient	
  and	
  water	
  cycling	
  
    h>p://www.cifor.org/crp6	
  (and	
  references	
  within)	
  	
  
 	
  	
  	
  	
  The	
  Right	
  Trees	
  for	
  the	
  Right	
  Place	
  
A.	
  Trees	
  for	
  Products	
  




               fruit	
                      firewood	
                        medicine	
                         income	
                   Sawn	
  wood	
                            fodder	
  
B.	
  Trees	
  for	
  Services	
  




       Soil	
  fer+lity	
                     Carbon	
                        erosion	
                    watershed	
                             shade	
                  biodiversity	
  

C.	
  Trees	
  for	
  right	
  place…	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  Simple	
  as	
  ABC	
  !?	
  
The	
  right	
  trees	
  (A	
  +	
  B)	
  for	
  Africa	
  
Useful	
  Trees	
  for	
  Africa	
  
                           •  Agroforestry	
  
                              database	
  
                           •  Useful	
  trees	
  
                              (Ethiopia,	
  Eritrea,	
  
                              Rwanda,	
  Tanzania,	
  
                              Uganda)	
  
                           •  Trees,	
  shrubs,	
  and	
  
                              lianas	
  of	
  West	
  
                              African	
  dry	
  zones	
  

                           	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  
                           	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  985	
  species	
  
Occurrences	
  per	
  species	
  
      h>p://data.gbif.org/occurrences/	
  
 Occurrences   Species   Percentage   Cum. Percentage
300+                 1         0.1%              0.1%
200-299              3         0.3%              0.4%
100-199             31         3.1%              3.6%
50-99               63         6.4%              9.9%
30-49              107        10.9%             20.8%
10-29              184        18.7%             39.5%
1-9                220        22.3%             61.8%
0                  376        38.2%            100.0%
All                985       100.0%            100.0%
LocaHons	
  of	
  985	
  useful	
  tree	
  species	
  
LocaHons	
  of	
  985	
  useful	
  tree	
  species	
  
VegetaHon	
  maps	
  as	
  decision-­‐support	
  
      tools	
  for	
  species	
  selecHon	
  	
  
•  The	
  Useful	
  Tree	
  Species	
  for	
  Africa	
  map	
  for	
  
   the	
  whole	
  of	
  Africa	
  
    – h>p://www.worldagroforestrycentre.org/
      our_products/databases	
  


•  The	
  Vegeta4on	
  and	
  Climate	
  change	
  in	
  
   Eastern	
  Africa	
  map	
  for	
  7	
  countries	
  
    –  h>p://www.vegetaHonmap4africa.org	
  
Decision-­‐support	
  tools	
  for	
  species	
  selecHon	
  
                http://www.worldagroforestrycentre.org/our_products/databases 	





“ICRAF	
  have	
  a	
  ni@y	
  new	
  
tool	
  out	
  called	
  Useful	
  
Tree	
  Species	
  for	
  Africa.	
  
I’ve	
  been	
  playing	
  around	
  
with	
  it	
  and	
  I	
  have	
  to	
  say	
  
it’s	
  impressive.”	
  
Luigi	
  Guarino	
  h>p://
agro.biodiver.se/)	
  
Suggested	
  method	
  for	
  using	
  the	
  tool	
  
      ...	
  Please	
  try	
  it	
  yourself	
  
Suggested	
  method	
  for	
  using	
  the	
  tool	
  
      ...	
  Please	
  try	
  it	
  yourself	
  
VECEA:	
  A	
  higher	
  resolu+on	
  map	
  for	
  7	
  countries	
  in	
  eastern	
  Africa	
  
       (Ethiopia,	
  Kenya,	
  Malawi,	
  Rwanda,	
  Uganda,	
  Tanzania	
  	
  and	
  Zambia)	
  
                    h>p://www.vegetaHonmap4africa.org	
  	
  
VECEA:	
  A	
  higher	
  resolu+on	
  map	
  for	
  7	
  countries	
  in	
  eastern	
  Africa	
  
               (Ethiopia,	
  Kenya,	
  Malawi,	
  Rwanda,	
  Uganda,	
  Tanzania	
  	
  and	
  Zambia)	
  
                                    h>p://www.vegetaHonmap4africa.org	
  	
  

A	
  collabora+ve	
  effort	
  by:	
  
	
  
Ethiopia:	
  Demissew	
  Sebsebe	
  and	
  Ib	
  Friis	
  (based	
  on	
  their	
  atlas)	
  
Kenya:	
  Francis	
  Gachathi	
  
Malawi:	
  Cornell	
  Dudley	
  
Rwanda:	
  Christopher	
  Ruffa	
  and	
  Minani	
  Védaste	
  
Tanzania:	
  Frank	
  Mbago	
  and	
  Heriel	
  Moshi	
  
Uganda:	
  James	
  Kalema,	
  John	
  Mulumba	
  and	
  Mary	
  Namaganda	
  
Zambia:	
  Mike	
  Bingham	
  
F&L	
  Denmark:	
  Jens-­‐Peter	
  Lillesø	
  and	
  Lars	
  Graudal	
  
ICRAF:	
  Roeland	
  Kindt,	
  Paulo	
  van	
  Breugel	
  and	
  Ramni	
  Jamnadass	
  
	
  
We	
  	
  are	
  very	
  grateful	
  	
  for	
  the	
  sugges+ons	
  and	
  comments	
  from	
  
Paul	
  Smith	
  and	
  Jonathan	
  Timberlake	
  (Kew)	
  
	
  
New	
  website	
  (launch	
  August	
  2012):	
  
hbp://www.vegeta+onmap4africa.org/	
  	
  
VECEA:	
  A	
  higher	
  resolu+on	
  map	
  for	
  7	
  countries	
  in	
  eastern	
  Africa	
  
       (Ethiopia,	
  Kenya,	
  Malawi,	
  Rwanda,	
  Uganda,	
  Tanzania	
  	
  and	
  Zambia)	
  
                    h>p://www.vegetaHonmap4africa.org	
  	
  




                                                                                       Total:	
  7	
  volumes	
  
VECEA:	
  A	
  higher	
  resolu+on	
  map	
  for	
  7	
  countries	
  in	
  eastern	
  Africa	
  
       (Ethiopia,	
  Kenya,	
  Malawi,	
  Rwanda,	
  Uganda,	
  Tanzania	
  	
  and	
  Zambia)	
  
                    h>p://www.vegetaHonmap4africa.org	
  	
  
                                                                      Ethiopia	
  –	
  zooming	
  in	
  
VECEA:	
  A	
  higher	
  resolu+on	
  map	
  for	
  7	
  countries	
  in	
  eastern	
  Africa	
  
       (Ethiopia,	
  Kenya,	
  Malawi,	
  Rwanda,	
  Uganda,	
  Tanzania	
  	
  and	
  Zambia)	
  
                    h>p://www.vegetaHonmap4africa.org	
  	
  
VECEA:	
  A	
  higher	
  resolu+on	
  map	
  for	
  7	
  countries	
  in	
  eastern	
  Africa	
  
       (Ethiopia,	
  Kenya,	
  Malawi,	
  Rwanda,	
  Uganda,	
  Tanzania	
  	
  and	
  Zambia)	
  
                    h>p://www.vegetaHonmap4africa.org	
  	
  
VECEA:	
  A	
  higher	
  resolu+on	
  map	
  for	
  7	
  countries	
  in	
  eastern	
  Africa	
  
       (Ethiopia,	
  Kenya,	
  Malawi,	
  Rwanda,	
  Uganda,	
  Tanzania	
  	
  and	
  Zambia)	
  
                    h>p://www.vegetaHonmap4africa.org	
  	
  
VECEA:	
  A	
  higher	
  resolu+on	
  map	
  for	
  7	
  countries	
  in	
  eastern	
  Africa	
  
       (Ethiopia,	
  Kenya,	
  Malawi,	
  Rwanda,	
  Uganda,	
  Tanzania	
  	
  and	
  Zambia)	
  
                    h>p://www.vegetaHonmap4africa.org	
  	
  
Habitat	
  suitability	
  mapping	
  for	
  useful	
  tree	
  species	
  
                                                            	
  
Ensemble	
  methods	
  –	
  present	
  and	
  possible	
  futures	
  
    (see	
  also	
  Eike	
  Luedeling,	
  today	
  at	
  15:50)	
  
                                                                                                bio5                                                              bio5                                                                bio5                                                            bio5




                                                                                                                                                                                                                                                                0.0 0.2 0.4 0.6 0.8 1.0
                                                                             0.6




                                                                                                                                                                                                0.05 0.10 0.15 0.20
                                                                                                                            0.6
                                                                             0.4
                                                                   MAXENT




                                                                                                                   GBM




                                                                                                                                                                                                                                                         GLM
                                                                                                                                                                                     RF
                                                                                                                            0.4
                                                                             0.2




                                                                                                                            0.2
                                                                             0.0
                                                                                    100   150   200    250   300                                      100   150   200    250   300                                        100   150   200    250   300                                    100   150   200    250   300




                                                                                                bio5                                                              bio5                                                                bio5                                                            bio5




                                                                                                                            0.0 0.2 0.4 0.6 0.8 1.0




                                                                                                                                                                                                0.0 0.2 0.4 0.6 0.8 1.0




                                                                                                                                                                                                                                                                0.0 0.2 0.4 0.6 0.8 1.0
                                                                             0.8
                                                                             0.6




                                                                                                                                                                                     GAMSTEP
                                                                   GLMSTEP




                                                                                                                                                                                                                                                         MGCV
                                                                                                                   GAM
                                                                             0.4
                                                                             0.2
                                                                             0.0
                                                                                    100   150   200    250   300                                      100   150   200    250   300                                        100   150   200    250   300                                    100   150   200    250   300




                                                                                                bio5                                                              bio5                                                                bio5                                                            bio5




                                                                                                                                                                                                0.0 0.1 0.2 0.3 0.4 0.5




                                                                                                                                                                                                                                                                0.4
                                                                             0.30




                                                                                                                            0.0 0.2 0.4 0.6 0.8




                                                                                                                                                                                                                                                                0.3
                                                                             0.20
                                                                   EARTH




                                                                                                                   RPART




                                                                                                                                                                                     NNET




                                                                                                                                                                                                                                                         FDA

                                                                                                                                                                                                                                                                0.2
                                                                             0.10




                                                                                                                                                                                                                                                                0.1
                                                                             0.00




                                                                                                                                                                                                                                                                0.0
                                                                                    100   150   200    250   300                                      100   150   200    250   300                                        100   150   200    250   300                                    100   150   200    250   300




                                                                                                bio5                                                              bio5                                                                bio5




                                                                             0.15




                                                                                                                                                                                                0.6
                                                                                                                            0.6




                                                                                                                                                                                     ENSEMBLE
                                                                             0.10
                                                                   BIOCLIM




                                                                                                                            0.4
                                                                                                                   DOMAIN




                                                                                                                                                                                                0.4
                                                                             0.05




                                                                                                                            0.2




                                                                                                                                                                                                0.2
                                                                             0.00




                                                                                                                            0.0




                                                                                                                                                                                                0.0
                                                                                    100   150   200    250   300                                      100   150   200    250   300                                        100   150   200    250   300




   agreement	
  
   between	
  
   14	
  models	
  
   on	
  the	
  
   predicted	
  
   presence	
  
   of	
  a	
  species	
  
                            For	
  species	
  with	
  
                            sufficient	
  point	
  data	
  
Tree	
  diversity	
  analysis	
  
•  A	
  free	
  manual	
  and	
  soeware	
  for	
  biodiversity	
  analysis,	
  applied	
  (among	
  
   other	
  research	
  domains)	
  for	
  on-­‐farm	
  diversity	
  analysis	
  	
  
•  Ensemble	
  suitability	
  mapping	
  methods	
  will	
  be	
  expanded	
  	
  




                                                                      h>p://
                                                                      www.worldagroforestrycent
                                                                      re.org/our_products/
                                                                      databases	
  


                                                                       h>p://cran.r-­‐project.org/
                                                                       web/packages/
                                                                       BiodiversityR/	
  
Using	
  vegeta+on	
  maps	
  to	
  infer	
  the	
  suitability	
  
           domain	
  of	
  useful	
  tree	
  species	
  
   Roeland	
  KINDT,	
  ecologist,	
  World	
  Agroforestry	
  Centre	
  
                                    	
  
        Thank	
  you	
  very	
  much	
  for	
  this	
  opportunity	
  

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Tree diversityday2012 kindt.pptx

  • 1. Using  vegeta+on  maps  to  infer  the  suitability   domain  of  useful  tree  species   Roeland  KINDT,  ecologist   World  Agroforestry  Centre  (ICRAF)   (h>p://www.worldagroforestry.org/  )  
  • 2. World  Agroforestry  Centre   (h>p://www.worldagroforestry.org/  )   Collaborative programmes in different ecoregions Trees in forests and on farms Agroforestry  is  a  dynamic,  ecologically-­‐based,   natural  resource  management  pracHce  that,   through  the  integraHon  of  trees  on  farms  and   in  the  agricultural  landscape,  diversifies  and   sustains  producHon  for  increased  social,   economic  and  environmental  benefits.  
  • 3. Some  of  the  most  fundamental  contribuHons   of  trees  in  fields,  farming  landscapes  and   forests  are  as  direct  inputs  to  the  livelihoods   of  resource-­‐poor  rural  people.  Appropriately   managed  trees  help  diversify  rural   livelihoods  and  contribute  to  the   sustainability  of  agricultural  producHon   through  Hghter  nutrient  and  water  cycling   h>p://www.cifor.org/crp6  (and  references  within)    
  • 4.          The  Right  Trees  for  the  Right  Place   A.  Trees  for  Products   fruit   firewood   medicine   income   Sawn  wood   fodder   B.  Trees  for  Services   Soil  fer+lity   Carbon   erosion   watershed   shade   biodiversity   C.  Trees  for  right  place…                                                                      Simple  as  ABC  !?  
  • 5. The  right  trees  (A  +  B)  for  Africa  
  • 6. Useful  Trees  for  Africa   •  Agroforestry   database   •  Useful  trees   (Ethiopia,  Eritrea,   Rwanda,  Tanzania,   Uganda)   •  Trees,  shrubs,  and   lianas  of  West   African  dry  zones                                                  985  species  
  • 7. Occurrences  per  species   h>p://data.gbif.org/occurrences/   Occurrences Species Percentage Cum. Percentage 300+ 1 0.1% 0.1% 200-299 3 0.3% 0.4% 100-199 31 3.1% 3.6% 50-99 63 6.4% 9.9% 30-49 107 10.9% 20.8% 10-29 184 18.7% 39.5% 1-9 220 22.3% 61.8% 0 376 38.2% 100.0% All 985 100.0% 100.0%
  • 8. LocaHons  of  985  useful  tree  species  
  • 9. LocaHons  of  985  useful  tree  species  
  • 10. VegetaHon  maps  as  decision-­‐support   tools  for  species  selecHon     •  The  Useful  Tree  Species  for  Africa  map  for   the  whole  of  Africa   – h>p://www.worldagroforestrycentre.org/ our_products/databases   •  The  Vegeta4on  and  Climate  change  in   Eastern  Africa  map  for  7  countries   –  h>p://www.vegetaHonmap4africa.org  
  • 11. Decision-­‐support  tools  for  species  selecHon   http://www.worldagroforestrycentre.org/our_products/databases “ICRAF  have  a  ni@y  new   tool  out  called  Useful   Tree  Species  for  Africa.   I’ve  been  playing  around   with  it  and  I  have  to  say   it’s  impressive.”   Luigi  Guarino  h>p:// agro.biodiver.se/)  
  • 12. Suggested  method  for  using  the  tool   ...  Please  try  it  yourself  
  • 13. Suggested  method  for  using  the  tool   ...  Please  try  it  yourself  
  • 14. VECEA:  A  higher  resolu+on  map  for  7  countries  in  eastern  Africa   (Ethiopia,  Kenya,  Malawi,  Rwanda,  Uganda,  Tanzania    and  Zambia)   h>p://www.vegetaHonmap4africa.org    
  • 15. VECEA:  A  higher  resolu+on  map  for  7  countries  in  eastern  Africa   (Ethiopia,  Kenya,  Malawi,  Rwanda,  Uganda,  Tanzania    and  Zambia)   h>p://www.vegetaHonmap4africa.org     A  collabora+ve  effort  by:     Ethiopia:  Demissew  Sebsebe  and  Ib  Friis  (based  on  their  atlas)   Kenya:  Francis  Gachathi   Malawi:  Cornell  Dudley   Rwanda:  Christopher  Ruffa  and  Minani  Védaste   Tanzania:  Frank  Mbago  and  Heriel  Moshi   Uganda:  James  Kalema,  John  Mulumba  and  Mary  Namaganda   Zambia:  Mike  Bingham   F&L  Denmark:  Jens-­‐Peter  Lillesø  and  Lars  Graudal   ICRAF:  Roeland  Kindt,  Paulo  van  Breugel  and  Ramni  Jamnadass     We    are  very  grateful    for  the  sugges+ons  and  comments  from   Paul  Smith  and  Jonathan  Timberlake  (Kew)     New  website  (launch  August  2012):   hbp://www.vegeta+onmap4africa.org/    
  • 16. VECEA:  A  higher  resolu+on  map  for  7  countries  in  eastern  Africa   (Ethiopia,  Kenya,  Malawi,  Rwanda,  Uganda,  Tanzania    and  Zambia)   h>p://www.vegetaHonmap4africa.org     Total:  7  volumes  
  • 17. VECEA:  A  higher  resolu+on  map  for  7  countries  in  eastern  Africa   (Ethiopia,  Kenya,  Malawi,  Rwanda,  Uganda,  Tanzania    and  Zambia)   h>p://www.vegetaHonmap4africa.org     Ethiopia  –  zooming  in  
  • 18. VECEA:  A  higher  resolu+on  map  for  7  countries  in  eastern  Africa   (Ethiopia,  Kenya,  Malawi,  Rwanda,  Uganda,  Tanzania    and  Zambia)   h>p://www.vegetaHonmap4africa.org    
  • 19. VECEA:  A  higher  resolu+on  map  for  7  countries  in  eastern  Africa   (Ethiopia,  Kenya,  Malawi,  Rwanda,  Uganda,  Tanzania    and  Zambia)   h>p://www.vegetaHonmap4africa.org    
  • 20. VECEA:  A  higher  resolu+on  map  for  7  countries  in  eastern  Africa   (Ethiopia,  Kenya,  Malawi,  Rwanda,  Uganda,  Tanzania    and  Zambia)   h>p://www.vegetaHonmap4africa.org    
  • 21. VECEA:  A  higher  resolu+on  map  for  7  countries  in  eastern  Africa   (Ethiopia,  Kenya,  Malawi,  Rwanda,  Uganda,  Tanzania    and  Zambia)   h>p://www.vegetaHonmap4africa.org    
  • 22. Habitat  suitability  mapping  for  useful  tree  species     Ensemble  methods  –  present  and  possible  futures   (see  also  Eike  Luedeling,  today  at  15:50)   bio5 bio5 bio5 bio5 0.0 0.2 0.4 0.6 0.8 1.0 0.6 0.05 0.10 0.15 0.20 0.6 0.4 MAXENT GBM GLM RF 0.4 0.2 0.2 0.0 100 150 200 250 300 100 150 200 250 300 100 150 200 250 300 100 150 200 250 300 bio5 bio5 bio5 bio5 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 0.8 1.0 0.0 0.2 0.4 0.6 0.8 1.0 0.8 0.6 GAMSTEP GLMSTEP MGCV GAM 0.4 0.2 0.0 100 150 200 250 300 100 150 200 250 300 100 150 200 250 300 100 150 200 250 300 bio5 bio5 bio5 bio5 0.0 0.1 0.2 0.3 0.4 0.5 0.4 0.30 0.0 0.2 0.4 0.6 0.8 0.3 0.20 EARTH RPART NNET FDA 0.2 0.10 0.1 0.00 0.0 100 150 200 250 300 100 150 200 250 300 100 150 200 250 300 100 150 200 250 300 bio5 bio5 bio5 0.15 0.6 0.6 ENSEMBLE 0.10 BIOCLIM 0.4 DOMAIN 0.4 0.05 0.2 0.2 0.00 0.0 0.0 100 150 200 250 300 100 150 200 250 300 100 150 200 250 300 agreement   between   14  models   on  the   predicted   presence   of  a  species   For  species  with   sufficient  point  data  
  • 23. Tree  diversity  analysis   •  A  free  manual  and  soeware  for  biodiversity  analysis,  applied  (among   other  research  domains)  for  on-­‐farm  diversity  analysis     •  Ensemble  suitability  mapping  methods  will  be  expanded     h>p:// www.worldagroforestrycent re.org/our_products/ databases   h>p://cran.r-­‐project.org/ web/packages/ BiodiversityR/  
  • 24. Using  vegeta+on  maps  to  infer  the  suitability   domain  of  useful  tree  species   Roeland  KINDT,  ecologist,  World  Agroforestry  Centre     Thank  you  very  much  for  this  opportunity