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Björn Brembs
Universität Regensburg
http://brembs.net
Scientists produce publications, data
and code
Scientists produce publications, data
and code
Scientists produce publications, data
and code
Dysfunctional scholarly literature
• Limited access
• No scientific impact analysis
• Lousy peer-review
• No global search
• No functional hyperlinks
• No flexible data visualization
• No submission standards
• (Almost) no statistics
• No text/data-mining
• No effective way to sort,
filter and discover
• No networking feature
• etc.
…it’s like the
web in 1995!
Scientific data in peril
Report on Integration of Data and Publications, ODE Report 2011
http://www.alliancepermanentaccess.org/wp-content/plugins/download-monitor/download.php?id=ODE+Report+on+Integration+of+Data+and+Publications
Non-existent software archives
• Institutional email
• Institutional webspace
• Institutional blog
• Library access card
• Open access repository
• No archiving of publications
• No archiving of software
• No archiving of data
Don‘t let someone with orthogonal
interests touch your precious
• 2013: US$86m of US$126m annual APA budget comes from publishing
“This was an unacceptable practice, and we regret that it took place.”
Michael Hansen, CEO Of Elsevier's Health Sciences Division
Your tax dollars at work!
(Sources: Van Noorden, R. (2013). Open access: The true cost of science publishing. Nature 495, 426–9; Packer, A. L. (2010). The SciELO Open
Access: A Gold Way from the South. Can. J. High. Educ. 39, 111–126)
Costs[thousandUS$/article]
Legacy SciELO
Costs[thousandUS$/article]
Legacy SciELO
(Sources: Van Noorden, R. (2013). Open access: The true cost of science publishing. Nature 495, 426–9; Packer, A. L. (2010). The SciELO Open
Access: A Gold Way from the South. Can. J. High. Educ. 39, 111–126)
• Thomson Reuters: Impact Factor
• Eigenfactor (now Thomson Reuters)
• ScImago JournalRank (SJR)
• Scopus: SNIP, SJR
Source Normalized Impact per Paper
• Negotiable
• Irreproducible
• Mathematically
unsound
• PLoS Medicine, IF 2-11 (8.4)
(The PLoS Medicine Editors (2006) The Impact Factor Game. PLoS Med 3(6): e291.
http://www.plosmedicine.org/article/info:doi/10.1371%2Fjournal.pmed.0030291)
• Current Biology IF from 7 to 11 in
2003
– Bought by Cell Press (Elsevier) in 2001…
• Rockefeller University Press bought their data from Thomson Reuters
• Up to 19% deviation from published records
• Second dataset still not correct
Rossner M, van Epps H, Hill E (2007): Show me the data. The Journal of Cell
Biology, Vol. 179, No. 6, 1091-1092 http://jcb.rupress.org/cgi/content/full/179/6/1091
• Left-skewed distributions
• Weak correlation of individual
article citation rate with journal IF
Seglen PO (1997): Why the impact factor of journals should not be used for evaluating research. BMJ 1997;314(7079):497http://www.bmj.com/cgi/content/full/314/7079/497
Is journal rank like astrology?
The weakening relationship between the Impact Factor and papers' citations in the digital age (2012): George A. Lozano, Vincent Lariviere, Yves Gingras arXiv:1205.4328
Brembs, B., Button, K., & Munafò, M. (2013). Deep impact: unintended consequences of journal rank. Frontiers in Human Neuroscience, 7. doi:10.3389/fnhum.2013.00291
Munafò, M., Stothart, G., & Flint, J. (2009). Bias in genetic association studies and impact factor Molecular Psychiatry, 14 (2), 119-120 DOI: 10.1038/mp.2008.77
Brown, E. N., & Ramaswamy, S. (2007).
Quality of protein crystal structures. Acta
Crystallographica Section D Biological
Crystallography, 63(9), 941–950.
doi:10.1107/S0907444907033847
Fang et al. (2012): Misconduct accounts for the majority of retracted scientific publications. PNAS 109 no. 42 17028-17033
Data from: Fang, F., & Casadevall, A. (2011). RETRACTED SCIENCE AND THE RETRACTION INDEX Infection and Immunity DOI: 10.1128/IAI.05661-11
“High-Impact” journals attract the
most unreliable research
“Do you trust scientists?”
The disaster that is our digital
infrastructure
Save time and money by making
science open as an added benefit
Software to control the experiment and save the data
Software to analyze and visualize the data
(Sources: Van Noorden, R. (2013). Open access: The true cost of science publishing. Nature 495, 426–9; Packer, A. L. (2010). The SciELO Open
Access: A Gold Way from the South. Can. J. High. Educ. 39, 111–126)
Potentialforinnovation:9.8bp.a.
Costs[thousandUS$/article]
Legacy SciELO
Scientific source code
Research data
Narrative
The square traversal process has been the
foundation of scholarly communication for nearly
400 years!

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Digital Scholarship and Open Science need a digital infrastructure

  • 6. • Limited access • No scientific impact analysis • Lousy peer-review • No global search • No functional hyperlinks • No flexible data visualization • No submission standards • (Almost) no statistics • No text/data-mining • No effective way to sort, filter and discover • No networking feature • etc. …it’s like the web in 1995!
  • 8. Report on Integration of Data and Publications, ODE Report 2011 http://www.alliancepermanentaccess.org/wp-content/plugins/download-monitor/download.php?id=ODE+Report+on+Integration+of+Data+and+Publications
  • 9.
  • 10.
  • 12. • Institutional email • Institutional webspace • Institutional blog • Library access card • Open access repository • No archiving of publications • No archiving of software • No archiving of data
  • 13. Don‘t let someone with orthogonal interests touch your precious
  • 14.
  • 15.
  • 16. • 2013: US$86m of US$126m annual APA budget comes from publishing
  • 17.
  • 18. “This was an unacceptable practice, and we regret that it took place.” Michael Hansen, CEO Of Elsevier's Health Sciences Division
  • 19.
  • 20.
  • 21. Your tax dollars at work!
  • 22. (Sources: Van Noorden, R. (2013). Open access: The true cost of science publishing. Nature 495, 426–9; Packer, A. L. (2010). The SciELO Open Access: A Gold Way from the South. Can. J. High. Educ. 39, 111–126) Costs[thousandUS$/article] Legacy SciELO
  • 23. Costs[thousandUS$/article] Legacy SciELO (Sources: Van Noorden, R. (2013). Open access: The true cost of science publishing. Nature 495, 426–9; Packer, A. L. (2010). The SciELO Open Access: A Gold Way from the South. Can. J. High. Educ. 39, 111–126)
  • 24. • Thomson Reuters: Impact Factor • Eigenfactor (now Thomson Reuters) • ScImago JournalRank (SJR) • Scopus: SNIP, SJR Source Normalized Impact per Paper
  • 25. • Negotiable • Irreproducible • Mathematically unsound
  • 26. • PLoS Medicine, IF 2-11 (8.4) (The PLoS Medicine Editors (2006) The Impact Factor Game. PLoS Med 3(6): e291. http://www.plosmedicine.org/article/info:doi/10.1371%2Fjournal.pmed.0030291) • Current Biology IF from 7 to 11 in 2003 – Bought by Cell Press (Elsevier) in 2001…
  • 27.
  • 28.
  • 29.
  • 30. • Rockefeller University Press bought their data from Thomson Reuters • Up to 19% deviation from published records • Second dataset still not correct Rossner M, van Epps H, Hill E (2007): Show me the data. The Journal of Cell Biology, Vol. 179, No. 6, 1091-1092 http://jcb.rupress.org/cgi/content/full/179/6/1091
  • 31. • Left-skewed distributions • Weak correlation of individual article citation rate with journal IF Seglen PO (1997): Why the impact factor of journals should not be used for evaluating research. BMJ 1997;314(7079):497http://www.bmj.com/cgi/content/full/314/7079/497
  • 32. Is journal rank like astrology?
  • 33. The weakening relationship between the Impact Factor and papers' citations in the digital age (2012): George A. Lozano, Vincent Lariviere, Yves Gingras arXiv:1205.4328
  • 34. Brembs, B., Button, K., & Munafò, M. (2013). Deep impact: unintended consequences of journal rank. Frontiers in Human Neuroscience, 7. doi:10.3389/fnhum.2013.00291
  • 35. Munafò, M., Stothart, G., & Flint, J. (2009). Bias in genetic association studies and impact factor Molecular Psychiatry, 14 (2), 119-120 DOI: 10.1038/mp.2008.77
  • 36. Brown, E. N., & Ramaswamy, S. (2007). Quality of protein crystal structures. Acta Crystallographica Section D Biological Crystallography, 63(9), 941–950. doi:10.1107/S0907444907033847
  • 37. Fang et al. (2012): Misconduct accounts for the majority of retracted scientific publications. PNAS 109 no. 42 17028-17033
  • 38. Data from: Fang, F., & Casadevall, A. (2011). RETRACTED SCIENCE AND THE RETRACTION INDEX Infection and Immunity DOI: 10.1128/IAI.05661-11
  • 39. “High-Impact” journals attract the most unreliable research
  • 40.
  • 41.
  • 42.
  • 43.
  • 44. “Do you trust scientists?”
  • 45.
  • 46. The disaster that is our digital infrastructure
  • 47. Save time and money by making science open as an added benefit
  • 48.
  • 49. Software to control the experiment and save the data
  • 50. Software to analyze and visualize the data
  • 51.
  • 52.
  • 53.
  • 54.
  • 55.
  • 56.
  • 57.
  • 58.
  • 59.
  • 60.
  • 61.
  • 62.
  • 63. (Sources: Van Noorden, R. (2013). Open access: The true cost of science publishing. Nature 495, 426–9; Packer, A. L. (2010). The SciELO Open Access: A Gold Way from the South. Can. J. High. Educ. 39, 111–126) Potentialforinnovation:9.8bp.a. Costs[thousandUS$/article] Legacy SciELO
  • 64.
  • 65.
  • 66.
  • 70. The square traversal process has been the foundation of scholarly communication for nearly 400 years!