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Beyond the Tsunami: Developing the Infrastructure to Deal with Life Sciences Data   Christopher Southan and  Graham Cameron, EMBL-European Bioinformatics Institute (EBI), Cambridge, U.K.
EBI and Sanger at Hinxton:  Engaging with the Data Challenges ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
EMBL-Bank  Release 101,  Aug 2009,  163 million entries,  283 billion bases
10 years of Rapid Growth GU057010; SV 1; linear; viral cRNA; STD; VRL; 1701 BP. 08-OCT-2009 (Rel. 102, Created) 08-OCT-2009 (Rel. 102, Last updated, Version 1) Influenza A virus (A/Chengdu/03/2009(H1N1)) segment 4 hemagglutinin (HA) Jiang T., Qin C., Li X., Zhao H., Yu M., Deng Y., Yu X., Han J., Qin E., RA  Zhu Q.; "A community transmission of influenza A (H1N1) virus in a boarding school RT  in China, 22-27 July 2009“ ******************************************************************************************* AF177758; SV 1; linear; mRNA; STD; HUM; 1868 BP. 10-SEP-1999 (Rel. 61, Created) 07-OCT-2008 (Rel. 97, Last updated, Version 6) Homo sapiens ubiquitin specific protease 16 (USP16) mRNA, complete cds. PUBMED; 10786635.  Smith T.S., Southan C.; "Sequencing, tissue distribution and chromosomal assignment of a novel ubiquitin-specific protease USP23";  Biochim. Biophys. Acta 1490(1-2):184-88(2000).  Ensembl-Gn; ENSG00000143258; Homo_sapiens.
New Technology > New Data Archives European Nucleotide Archive  Snapshot March 2009
Accelerating Genome Coverage Jan 2009, 4370 projects
from EBI/Sanger
The 1000 Genomes Project:  Cataloging Human Genetic Variation   ,[object Object],[object Object],[object Object],[object Object],[object Object]
Data Exploitation: EBI Accesses  Last 4 years of hit-rates for   web pages and web services
Towards a sustainable infrastructure for biological information in Europe, to support life science, translation to medicine, the environment, bio-industries and society. Genomes Nucleotide sequence Expression Proteomes Protein families,  and domains Protein structure Protein interactions Chemical entities Pathways Systems Literature, ontologies
Conclusions  ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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Beyond the Tsunami: Dealing with Life Sciences Data

  • 1. Beyond the Tsunami: Developing the Infrastructure to Deal with Life Sciences Data Christopher Southan and Graham Cameron, EMBL-European Bioinformatics Institute (EBI), Cambridge, U.K.
  • 2.
  • 3. EMBL-Bank Release 101, Aug 2009, 163 million entries, 283 billion bases
  • 4. 10 years of Rapid Growth GU057010; SV 1; linear; viral cRNA; STD; VRL; 1701 BP. 08-OCT-2009 (Rel. 102, Created) 08-OCT-2009 (Rel. 102, Last updated, Version 1) Influenza A virus (A/Chengdu/03/2009(H1N1)) segment 4 hemagglutinin (HA) Jiang T., Qin C., Li X., Zhao H., Yu M., Deng Y., Yu X., Han J., Qin E., RA Zhu Q.; "A community transmission of influenza A (H1N1) virus in a boarding school RT in China, 22-27 July 2009“ ******************************************************************************************* AF177758; SV 1; linear; mRNA; STD; HUM; 1868 BP. 10-SEP-1999 (Rel. 61, Created) 07-OCT-2008 (Rel. 97, Last updated, Version 6) Homo sapiens ubiquitin specific protease 16 (USP16) mRNA, complete cds. PUBMED; 10786635. Smith T.S., Southan C.; "Sequencing, tissue distribution and chromosomal assignment of a novel ubiquitin-specific protease USP23"; Biochim. Biophys. Acta 1490(1-2):184-88(2000). Ensembl-Gn; ENSG00000143258; Homo_sapiens.
  • 5. New Technology > New Data Archives European Nucleotide Archive Snapshot March 2009
  • 6. Accelerating Genome Coverage Jan 2009, 4370 projects
  • 8.
  • 9. Data Exploitation: EBI Accesses Last 4 years of hit-rates for web pages and web services
  • 10. Towards a sustainable infrastructure for biological information in Europe, to support life science, translation to medicine, the environment, bio-industries and society. Genomes Nucleotide sequence Expression Proteomes Protein families, and domains Protein structure Protein interactions Chemical entities Pathways Systems Literature, ontologies
  • 11.

Notas del editor

  1. EBI 5 Petabytes, doubling every year