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Biological Molecules Project
           Biology 12
           by Coleman Everest
WATER
• Earth’s ability to support life is based on the presence of   Water as a solvent
liquid water. It makes up approximately 60% of the human        -Solvent for all polar molecules and ionic compounds, dissolves more
body and 60% - 70% of all life forms.                           than any other liquid.
                                                                -Acts as a “chemical wedge”; can break apart and form new bonds;
                                                                facilitates many chemical reactions in biological systems in the human
• A water molecule consists of two positively charged
hydrogen atoms and one negatively charged oxygen                body.
atom. Water molecules are held together by weak attractive
                                                                Water as a temperature regulator
forces called hydrogen bonds.
                                                                -Water temperature changes slowly; no drastic changes.
                                                                -High boiling point (100 degrees Celsius)

                                                                Water as a lubricant
                                                                -A vital, natural lubricant.
                                                                -Humans need water to produce the bodily fluids that allow us to
                                                                 blink, circulate blood, swallow, and do the horizontal monster mash.
                                                                                                                        McGraw-Hill Companies




• H2O is a polar molecule because the electrons are unevenly
distributed meaning the hydrogen ends of the molecule have a
slight positive negative charge and the oxygen end has a mild
negative charge. This weak attraction is enough to create
hydrogen bonds, but a whole water molecule is electrically
neutral.
Acids, Bases, & Buffers
                                                             Acids, bases and buffers all have important roles in the
                                                             biological systems within the human body, with particular
                                                             regard to maintaining chemical balance.

                                                             Acids (substances with a pH lower than 7): essential to the
                                                             digestive system. Hydrochloric Acid in our stomach helps us
                                                             break down food particles so that nutrients can be extracted.

                                                             Bases (with a pH greater than 7): blood must maintain a pH
                                                             of about 7.35-7.45, (a slight base) in order for hemoglobin to
                                                             be carried.

                                                             Buffers are chemical combinations present throughout the
                                                             systems of the human body that keep pH levels regular.
                                                             Buffers resist changes in pH (from, for example, a poorly
                                                             balanced diet) because they can take up hydrogen or
                                                             hydroxide ions produced through the dissociation of water
                                                             molecules. (see below)



 The scale used to measure the acidity or alkalinity of                                                      shows how
                                                                                                             dissociated
  substances is pH (0-14), 0 being very acidic and 14                                                      hydrogen and
being very alkali. Water is considered neutral at about 7.                                                 hydroxide ions
                                                                                                           can bond with
                                                                                                          other chemicals
                                                                                                          to form acids or
                                                                                                                bases.
Carbohydrates
        type                structure             examples
                                                                       All carbohydrates contain hydrogen, oxygen and carbon. The
                                               Glucose (pictured)
   Monosaccharide
                                                    Ribose
                                                                       3 main types of carbohydrates are monosaccharides,
   (Simple sugars)
                                                   Fructose            disaccharides and polysaccharides. (saccharide = sugar) The
      CnH2nOn
                                                  Deoxyribose          carbohydrates in one’s diet allow cells to produce energy.


                                                 Sucrose/table
    Disaccharides
                                                 sugar(pictured)         Dehydration synthesis - A simple process by which
                                                    Maltose                   monosaccharides become di- or polysaccharides:
   (Double sugars)
                                                    Lactose
                                                                             Dehydration (removal of water) occurs when two
                                                                            carbohydrates are brought together to form a new
                                                                          carbohydrate. Water is left over as a by-product of the
                                                    Starch
                                                                          synthesis, taking a hydrogen (H) and a hydroxide (OH)
    Polysaccharides                           Cellulose (pictured)                        from either carbohydrate.
   (Complex sugars)                                Glycogen              Hydrolysis is the reverse of this process in which water
                                                                            is added to a compound in order to break it down.

                                               Cellulose: Found
  Starch: Storage                             only in plants - forms
   form of sugar in                            cell walls and gives
plants. Helps maintain                         them their rigidity.
 structural integrity.   Glycogen: Storage       Contains inra-
   Contains double         form of sugar in      intermolecular
        bonds.            animals. Contains   hydrogens bonds. An
                            double bonds.        insoluble fiber.
                                                                                           Dehydration Synthesis
Proteins
                                                    Proteins are organic compounds made
Amino Group   Side chain                                                                              Main Functions of
                                                      up of one or several polypeptides.
                                                                                                      Proteins
                                                       Amino acids (monomers) are
                                                                                                      •Source of energy
                                                     bonded together in certain ways to
                                                                                                      • Builds / repairs body tissues
                                                     form different proteins. There are a
                                                                                                      (muscle, etc.)
                                                     total of 20 individual amino acids, all
                                                                                                      • Makes up enzymes &
                                                     with a nitrogen-based amino group.
                                                                                                      hormones
                                                      Peptide bonds, which form through
                                                                                                      • Maintains healthy hair, nails,
                                                    dehydration reactions, link amino acids
                                                                                                      skin
                           Carboxylic acid group.                 in a protein.


                                                                                                         Structure
                                                                      Primary: a sequence of amino acids held together by peptide bonds.
                                                                      Secondary: forms as a result of weak attractive forces between adjacent amino
                                                                      acids.
                                                                      Tertiary: globular proteins that hold their shape due to disulphide bonds between
                                                                      folded strands. Many enzymes have this structure.
                                                                      Quaternary: made of several polypeptides coming together to form a larger
                                                                      molecule. Hemoglobin has this structure and is made up of 4 polypeptides.
Nucleic Acids
                              Nucleotides (a type of monomer) form polymers called nucleic acids.

                                                  ATP: a single nucleotide
                                                which acts as a “mobile energy
                                                source” for all cells in the body.
   Deoxyribonucleic
        Acid                   DNA                                                    RNA             Ribonucleic Acid


The genetic material itself                                                                  involved in using genetic information

            Double alpha helix structure                                             Linear (single-stranded) structure

                                                 The nucleotides are made
                The four types of                                                            The four types of
                                                   up of a 5-carbon sugar, a
          nitrogenous bases in DNA                                                      nitrogenous bases in RNA
                                                 phosphate, and a nitrogenous
            fall into two categories.                                                    fall into two categories.
                                                             base.

  Purine bases          Pyrimidine bases                                             Purine bases         Pyrimidine bases
  • Adenine (A)         • Thymine (T)                                                • Adenine (A)        •   Uracil (U)
  • Guanine (G)         • Cytosine (C)                                               • Guanine (G)        • Cytosine (C)


                                                                                                           DNA has a double helix
                                                                                                       structure, consisting of a sugar-
                                                                                                        phosphate backbone (purple),
                                                                                                          held in helix formation by
                                                                                                       complimentary base pairings (T-
                                                                                                       A, C-G) and hydrogen bonding.
Lipids
                                       Oils, fats, waxes, steroids and phospholipids are all classified as lipids.



                           Fats and oils (neutral fats) provide
                           energy storage. They consist of 3                             Steroids
                           fatty acids attached to one glycerol         “Circular fats”, steroids are structured very
                           molecule and are known as                      differently than other lipids. Rather than
Fatty acids are made       triglycerides. Oils, liquid at room           having a glycerol and 3 fatty acids, steroids
of long hydrocarbon        temperature, store energy in plants,            consist of four carbon rings with other
chains ending in an acid   and fats, solid at room temperature do        groups of atoms (OH-, etc.) added. Some                 Cholesterol
group.                     the same in animals. Fats and oils are         common steroids in the human body are
                           not water soluble, and are stored in            testosterone, estrogen, and cholesterol.                            Testosterone
                           body tissue.
  There are two types                                                      Fatty acids
     of fatty acid.                                          Glycerol



Unsaturated                Saturated
• Has some double          • single bonds between                                                             Phospholipids
bonds between carbons,     carbons allows for more                                                            A certain kind of fat that
allowing for less          hydrogens to be bonded,                                                                has a phosphate
hydrogen atoms. Found      saturating the carbons with                                                         group substituted for
in plant oils. Hydrogens   hydrogen. Found only in                                                             one of the three fatty
can be added, making       animal fats, which are solid at                                                      acids attached to the
                                                                                                                glycerol molecule. A
them saturated.            room temperature.
                                                                                                               phospholipid molecule
                                                                                                                  consists of a polar
                                                                                                                 (hydrophilic) “head”
                                                                                                                consisting of glycerol,
                                                                                                                 nitrogen phosphate
                                                                                                               groups. and and non-
                                                                                                                 polar (hydrophobic)
                                                                                                              “tail”, consisting of two
                                                                                                                      fatty acids.
the end
Bibliography
                                  In Class Notes

 General & Human Biology: http://mhhe.com/biosci/genbio/espv2/data/cells/001/
                                 index.html

 Open School BC Biology 12 Course Resource: http://openschool.bc.ca/courses/
                          biology/bi12/mod1.html

Chemical Compound Outline (Part I): http://waynesword.palomar.edu/chemid1.htm

  Kimball's Biology Pages:http: //users.rcn.com/jkimball.ma.ultranet/BiologyPages/

 An On-Line Biology Book: http://www.emc.maricopa.edu/faculty/farabee/BIOBK/
                              BioBookTOC.html

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Biology Keynote

  • 1. Biological Molecules Project Biology 12 by Coleman Everest
  • 2. WATER • Earth’s ability to support life is based on the presence of Water as a solvent liquid water. It makes up approximately 60% of the human -Solvent for all polar molecules and ionic compounds, dissolves more body and 60% - 70% of all life forms. than any other liquid. -Acts as a “chemical wedge”; can break apart and form new bonds; facilitates many chemical reactions in biological systems in the human • A water molecule consists of two positively charged hydrogen atoms and one negatively charged oxygen body. atom. Water molecules are held together by weak attractive Water as a temperature regulator forces called hydrogen bonds. -Water temperature changes slowly; no drastic changes. -High boiling point (100 degrees Celsius) Water as a lubricant -A vital, natural lubricant. -Humans need water to produce the bodily fluids that allow us to blink, circulate blood, swallow, and do the horizontal monster mash. McGraw-Hill Companies • H2O is a polar molecule because the electrons are unevenly distributed meaning the hydrogen ends of the molecule have a slight positive negative charge and the oxygen end has a mild negative charge. This weak attraction is enough to create hydrogen bonds, but a whole water molecule is electrically neutral.
  • 3. Acids, Bases, & Buffers Acids, bases and buffers all have important roles in the biological systems within the human body, with particular regard to maintaining chemical balance. Acids (substances with a pH lower than 7): essential to the digestive system. Hydrochloric Acid in our stomach helps us break down food particles so that nutrients can be extracted. Bases (with a pH greater than 7): blood must maintain a pH of about 7.35-7.45, (a slight base) in order for hemoglobin to be carried. Buffers are chemical combinations present throughout the systems of the human body that keep pH levels regular. Buffers resist changes in pH (from, for example, a poorly balanced diet) because they can take up hydrogen or hydroxide ions produced through the dissociation of water molecules. (see below) The scale used to measure the acidity or alkalinity of shows how dissociated substances is pH (0-14), 0 being very acidic and 14 hydrogen and being very alkali. Water is considered neutral at about 7. hydroxide ions can bond with other chemicals to form acids or bases.
  • 4. Carbohydrates type structure examples All carbohydrates contain hydrogen, oxygen and carbon. The Glucose (pictured) Monosaccharide Ribose 3 main types of carbohydrates are monosaccharides, (Simple sugars) Fructose disaccharides and polysaccharides. (saccharide = sugar) The CnH2nOn Deoxyribose carbohydrates in one’s diet allow cells to produce energy. Sucrose/table Disaccharides sugar(pictured) Dehydration synthesis - A simple process by which Maltose monosaccharides become di- or polysaccharides: (Double sugars) Lactose Dehydration (removal of water) occurs when two carbohydrates are brought together to form a new carbohydrate. Water is left over as a by-product of the Starch synthesis, taking a hydrogen (H) and a hydroxide (OH) Polysaccharides Cellulose (pictured) from either carbohydrate. (Complex sugars) Glycogen Hydrolysis is the reverse of this process in which water is added to a compound in order to break it down. Cellulose: Found Starch: Storage only in plants - forms form of sugar in cell walls and gives plants. Helps maintain them their rigidity. structural integrity. Glycogen: Storage Contains inra- Contains double form of sugar in intermolecular bonds. animals. Contains hydrogens bonds. An double bonds. insoluble fiber. Dehydration Synthesis
  • 5. Proteins Proteins are organic compounds made Amino Group Side chain Main Functions of up of one or several polypeptides. Proteins Amino acids (monomers) are •Source of energy bonded together in certain ways to • Builds / repairs body tissues form different proteins. There are a (muscle, etc.) total of 20 individual amino acids, all • Makes up enzymes & with a nitrogen-based amino group. hormones Peptide bonds, which form through • Maintains healthy hair, nails, dehydration reactions, link amino acids skin Carboxylic acid group. in a protein. Structure Primary: a sequence of amino acids held together by peptide bonds. Secondary: forms as a result of weak attractive forces between adjacent amino acids. Tertiary: globular proteins that hold their shape due to disulphide bonds between folded strands. Many enzymes have this structure. Quaternary: made of several polypeptides coming together to form a larger molecule. Hemoglobin has this structure and is made up of 4 polypeptides.
  • 6. Nucleic Acids Nucleotides (a type of monomer) form polymers called nucleic acids. ATP: a single nucleotide which acts as a “mobile energy source” for all cells in the body. Deoxyribonucleic Acid DNA RNA Ribonucleic Acid The genetic material itself involved in using genetic information Double alpha helix structure Linear (single-stranded) structure The nucleotides are made The four types of The four types of up of a 5-carbon sugar, a nitrogenous bases in DNA nitrogenous bases in RNA phosphate, and a nitrogenous fall into two categories. fall into two categories. base. Purine bases Pyrimidine bases Purine bases Pyrimidine bases • Adenine (A) • Thymine (T) • Adenine (A) • Uracil (U) • Guanine (G) • Cytosine (C) • Guanine (G) • Cytosine (C) DNA has a double helix structure, consisting of a sugar- phosphate backbone (purple), held in helix formation by complimentary base pairings (T- A, C-G) and hydrogen bonding.
  • 7. Lipids Oils, fats, waxes, steroids and phospholipids are all classified as lipids. Fats and oils (neutral fats) provide energy storage. They consist of 3 Steroids fatty acids attached to one glycerol “Circular fats”, steroids are structured very molecule and are known as differently than other lipids. Rather than Fatty acids are made triglycerides. Oils, liquid at room having a glycerol and 3 fatty acids, steroids of long hydrocarbon temperature, store energy in plants, consist of four carbon rings with other chains ending in an acid and fats, solid at room temperature do groups of atoms (OH-, etc.) added. Some Cholesterol group. the same in animals. Fats and oils are common steroids in the human body are not water soluble, and are stored in testosterone, estrogen, and cholesterol. Testosterone body tissue. There are two types Fatty acids of fatty acid. Glycerol Unsaturated Saturated • Has some double • single bonds between Phospholipids bonds between carbons, carbons allows for more A certain kind of fat that allowing for less hydrogens to be bonded, has a phosphate hydrogen atoms. Found saturating the carbons with group substituted for in plant oils. Hydrogens hydrogen. Found only in one of the three fatty can be added, making animal fats, which are solid at acids attached to the glycerol molecule. A them saturated. room temperature. phospholipid molecule consists of a polar (hydrophilic) “head” consisting of glycerol, nitrogen phosphate groups. and and non- polar (hydrophobic) “tail”, consisting of two fatty acids.
  • 9. Bibliography In Class Notes General & Human Biology: http://mhhe.com/biosci/genbio/espv2/data/cells/001/ index.html Open School BC Biology 12 Course Resource: http://openschool.bc.ca/courses/ biology/bi12/mod1.html Chemical Compound Outline (Part I): http://waynesword.palomar.edu/chemid1.htm Kimball's Biology Pages:http: //users.rcn.com/jkimball.ma.ultranet/BiologyPages/ An On-Line Biology Book: http://www.emc.maricopa.edu/faculty/farabee/BIOBK/ BioBookTOC.html