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Citizen Science:
Data and service infrastructure Meeting
Ispra, 26-27 January 2016
Emmanouela Panteri
Contributors: Michalakis Nikitas, Irene Filiopoulou,Veljo Runnel
Registry of online tools
This repository contains online tools and apps supporting citizen
scientists initiatives and volunteer scientists in their study of nature.
Tools that can help for:
identification or
monitoring,
share and analyze
available data,
create and manage a
new project.
http://eubon.cybertaxonomy.africamuseum.be/cs-tools-repository
https://plutof.ut.ee/
PlutoF Citizen Science
There is a citizen science module available on PlutoF workbench to create
projects for biodiversity data mobilization.
Project coordinator can create new project and custom data input form that
can be used for collecting data in a uniform and standard way.
Ongoing developments will also able to share their data through APIs, as well
as data recording through API tools.
● Compatible with Darwin Core standards
● Can be published through the GBIF IPT (Integrated Publishing Toolkit).
Current consensus for the taxonomic backbone is that it should follow PESI
for the European species lists and higher classifications.
http://test-eubon.ebd.csic.es/web/citizen-science/home
EUBON Portal & Citizen Science Gateway
EUBON Portal will include CS Gateway
● CS tool directory
● intranet for CS content providers to work/publish
CS gateway will help to mobilize biodiversity data - offer some
tools, manuals, guidelines, standards recommendation
Different Citizen Science projects
...With Similar Data
Observations
Coordinates
Scientific Names
Images
Gathering data
JSON
JSON
...from different sources
One Source
CS Open Data with DKAN
CSOD is an open source, open data platform with a full suite of data and content
management cataloging, publishing and visualization features. It provides features
that make it easy to upload, parse, store, publish, catalog and visualize a vast
array of data, including spreadsheets, text documents and maps.
Datasets and Resources with DKAN and CKAN
DKAN is an open data portal built in Drupal. DKAN is designed to be feature-compatible
with CKAN, the Open Data portal built by the Open Knowledge Foundation.
DKAN Features
With DKAN, you can:
● Easily publish datasets in key machine readable formats
including JSON, XML, RDF and more
● Share datasets through an API
● Manage the importing of large datasets
Dataset
A dataset contains individual resources
as well as metadata. Metadata is the
"Who, What, When, Where, Why" of each
dataset. There are a number of
specifications for dataset metadata and
DKAN currently complies with the DCAT
and Project Open Data schemas.
It is possible to add new fields to DKAN to
conform to additional specifications or
custom requirements.
Resource
Resources are the actual files, APIs or links that are being shared. Resource types include csv, html,
xls, json, xlsx, doc, docx, rdf, txt, jpg, png, gif, tiff, pdf, odf, ods, odt, tsv, geojson and xml files.
Data API
Data from / to different sources
Data from GBIF through
Web services
Link to Micro-CT
Link to FishBase
JSON
thank you

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Citizen Science Open Data

  • 1. Citizen Science: Data and service infrastructure Meeting Ispra, 26-27 January 2016 Emmanouela Panteri Contributors: Michalakis Nikitas, Irene Filiopoulou,Veljo Runnel
  • 2. Registry of online tools This repository contains online tools and apps supporting citizen scientists initiatives and volunteer scientists in their study of nature. Tools that can help for: identification or monitoring, share and analyze available data, create and manage a new project. http://eubon.cybertaxonomy.africamuseum.be/cs-tools-repository
  • 3. https://plutof.ut.ee/ PlutoF Citizen Science There is a citizen science module available on PlutoF workbench to create projects for biodiversity data mobilization. Project coordinator can create new project and custom data input form that can be used for collecting data in a uniform and standard way. Ongoing developments will also able to share their data through APIs, as well as data recording through API tools. ● Compatible with Darwin Core standards ● Can be published through the GBIF IPT (Integrated Publishing Toolkit). Current consensus for the taxonomic backbone is that it should follow PESI for the European species lists and higher classifications.
  • 4. http://test-eubon.ebd.csic.es/web/citizen-science/home EUBON Portal & Citizen Science Gateway EUBON Portal will include CS Gateway ● CS tool directory ● intranet for CS content providers to work/publish CS gateway will help to mobilize biodiversity data - offer some tools, manuals, guidelines, standards recommendation
  • 5. Different Citizen Science projects ...With Similar Data Observations Coordinates Scientific Names Images
  • 8. CS Open Data with DKAN CSOD is an open source, open data platform with a full suite of data and content management cataloging, publishing and visualization features. It provides features that make it easy to upload, parse, store, publish, catalog and visualize a vast array of data, including spreadsheets, text documents and maps.
  • 9. Datasets and Resources with DKAN and CKAN DKAN is an open data portal built in Drupal. DKAN is designed to be feature-compatible with CKAN, the Open Data portal built by the Open Knowledge Foundation. DKAN Features With DKAN, you can: ● Easily publish datasets in key machine readable formats including JSON, XML, RDF and more ● Share datasets through an API ● Manage the importing of large datasets Dataset A dataset contains individual resources as well as metadata. Metadata is the "Who, What, When, Where, Why" of each dataset. There are a number of specifications for dataset metadata and DKAN currently complies with the DCAT and Project Open Data schemas. It is possible to add new fields to DKAN to conform to additional specifications or custom requirements. Resource Resources are the actual files, APIs or links that are being shared. Resource types include csv, html, xls, json, xlsx, doc, docx, rdf, txt, jpg, png, gif, tiff, pdf, odf, ods, odt, tsv, geojson and xml files.
  • 11. Data from / to different sources Data from GBIF through Web services Link to Micro-CT Link to FishBase JSON