This is a tutorial on indexing diffraction patterns, deriving reflection conditions from SAED, derving point groups from CBED and combining both to find the space group. The slides contain exercises, the page to work on is at the end of the presentation and should be printed first to be able to measure on that page.
2. At the end of this lecture you should be able to
(1) index SAED patterns in case the cell parameters
are already known
(2) determine the possible space groups from SAED
patterns
(3) determine possible point groups from CBED
patterns
Combine (2) and (3) to find the space group.
3. Reflections: what do they represent?
What is their origin? What information
can they give us?
4. Constructive vs. destructive interference
reflection – no reflection
position distances between the planes (d-values)
intensity occupation in the planes
both symmetry of the structure
21. *How?
Make a list of all reflections with hkl and their d-values.
• use Excel to make the list yourself
• use free software like Powdercell
• ...
d hkl
7.68 001
5.64 010
5.46 100
4.55 011
4.45 101
3.92 110
... ...
26. h k l d I F
1 1 1 3.15349 83.73 61.89
2 0 0 2.731 0.11 3.07
2 2 0 1.93111 100 96.55
3 1 1 1.64685 31.44 46.49
2 2 2 1.57674 0.2 6.81
4 0 0 1.3655 12.69 74.25
3 3 1 1.25307 11.35 38.65
4 2 0 1.22134 0.54 8.67
4 2 2 1.11493 23.75 61.87
5 1 1 1.05116 6.88 34.2
3 3 3 1.05116 2.29 34.2
You need this table made for CaF2
27. We are going to index these patterns.
They are obtained by tilting around the diagonal row.
(Online version:
working page can
be found at the
end.)
28. We are going to index these patterns.
They are obtained by tilting around the diagonal row.
(Online version:
workpage can be
found at the end.)
29. Start with easiest:
highest symmetry or smallest interreflection distances
= usually lower zone indices (“main zones”)
(Online version:
workpage can be
found at the end.)
30. h k l d I F
1 1 1 3.15349 83.73 61.89
2 0 0 2.731 0.11 3.07
2 2 0 1.93111 100 96.55
3 1 1 1.64685 31.44 46.49
2 2 2 1.57674 0.2 6.81
4 0 0 1.3655 12.69 74.25
3 3 1 1.25307 11.35 38.65
4 2 0 1.22134 0.54 8.67
4 2 2 1.11493 23.75 61.87
5 1 1 1.05116 6.88 34.2
3 3 3 1.05116 2.29 34.2
Why go for smaller interreflection distances?
=higher d = less choices
34. probably this is <001>
(Cubic: [100], [010], [001] equivalent = <001>)
35. To do: measure the distances, compare to list d-hkl, index
consistently.
Scalebar = R (in mm)
Step 1: Use the scalebar for the conversion
factor to 1/d-values.
equal to 1/0.08 nm
R.d=L
L
42
43
44
34.4 mmÅ
53.8 mmÅ
0.02 mmÅ
36. To do: measure the distances, compare to list d-hkl, index
consistently.
Scalebar = R (in mm)
Step 1: Use the scalebar for the conversion
factor to 1/d-values.
equal to 1/0.08 nm
R.d=L
L
42
43
44
34.4 mmÅ
53.8 mmÅ
0.02 mmÅ
37. To do: measure the distances, compare to list d-hkl, index
consistently.
Scalebar = R (in mm)
Step 1: Use the scalebar for the conversion
factor to 1/d-values.
equal to 1/0.08 nm
R.d=L
L
42
43
44
34.4 mmÅ
53.8 mmÅ
0.02 mmÅ
38. Step 2: measure the distance of two reflections,
not on the same line, calculate the corresponding
d-value
Point 1
d
5.46 Å
3.15 Å
2.73 Å
Point 2
d
5.46 Å
3.15 Å
2.73 Å
1
2
39. Step 2: measure the distance of two reflections,
not on the same line, calculate the corresponding
d-value
Point 1
d
5.46 Å
3.15 Å
2.73 Å
Point 2
d
5.46 Å
3.15 Å
2.73 Å
1
2
40. Step 2: measure the distance of two reflections,
not on the same line, calculate the corresponding
d-value
Point 1
d
5.46 Å
3.15 Å
2.73 Å
Point 2
d
5.46 Å
3.15 Å
2.73 Å
1
2
41. To do: measure the distances, compare to list d-hkl, index.
Step 3: look up in the table to which
reflection this corresponds
100
110
200
Point 1
d
Point 2
d
Point 1
hkl
Point 2
hkl
1
2
5.46 Å
3.15 Å
2.73 Å
5.46 Å
3.15 Å
2.73 Å
100
110
200
42. To do: measure the distances, compare to list d-hkl, index.
Step 3: look up in the table to which
reflection this corresponds
100
110
200
Point 1
d
Point 2
d
Point 1
hkl
Point 2
hkl
1
2
5.46 Å
3.15 Å
2.73 Å
5.46 Å
3.15 Å
2.73 Å
100
110
200
43. To do: measure the distances, compare to list d-hkl, index.
Step 3: look up in the table to which
reflection this corresponds
100
110
200
Point 1
d
Point 2
d
Point 1
hkl
Point 2
hkl
1
2
5.46 Å
3.15 Å
2.73 Å
5.46 Å
3.15 Å
2.73 Å
100
110
200
44. Keep in mind: d-values valid for all equivalent {hkl}!
Step 4: make the indexation consistent
100
010
1
2
If point 1 is 200 then point 2 is 020 or 002.
Choose and stick with your choice.
50. Next zone: with reflections closest to the central beam.
Reflections closer to the central beam:
higher d-values
smaller amount of possible matches of hkl to this d
1
3
5
51. Measure the distance of two reflections, not on the
same line, calculate the corresponding d-value
Point 1
d
2.57 Å
2.75 Å
3.15 Å
Point 2
d
1 2
2.57 Å
2.73 Å
3.15 Å
52. Measure the distance of two reflections, not on the
same line, calculate the corresponding d-value
Point 1
d
2.57 Å
2.75 Å
3.15 Å
Point 2
d
1 2
2.57 Å
2.73 Å
3.15 Å
53. Measure the distance of two reflections, not on the
same line, calculate the corresponding d-value
Point 1
d
2.57 Å
2.75 Å
3.15 Å
Point 2
d
1 2
2.57 Å
2.73 Å
3.15 Å
54. Look up in the table to which reflection
this corresponds
110
200
111
110
200
111
Point 1
d = 3.15 Å
Point 2
d = 2.73 Å
hkl hkl
1 2
55. Look up in the table to which reflection
this corresponds
110
200
111
110
200
111
Point 1
d = 3.15 Å
Point 2
d = 2.73 Å
hkl hkl
1 2
56. Look up in the table to which reflection
this corresponds
110
200
111
110
200
111
Point 1
d = 3.15 Å
Point 2
d = 2.73 Å
hkl hkl
1 2
57. Make the indexation in a consistent manner.
1 2
Point 2 should be indexed as
200
020
200
all are correct
-
58. Make the indexation in a consistent manner.
1 2
Point 2 should be indexed as
200
020
200
all are correct
-
59. Consistency:
This is a tilt series...
...so the common row needs to have the
same indices in all patterns
200 200
200 200
67. Consistency:
200111
111
- 1
200
3
1 and 3 have the same d-value
+
relation between 1 and 3 = vector 200
you need two indices such that
h3+2 = h1
k3+0 = k1
l3+0 = l1
(also possible 111 and 111, make a choice and stick to it for the following patterns)
- - -
= h1 k1 l1
93. Right upper zone:
Point 2
d
1.22 Å
1.11 Å
1.05 Å
Measure the distance of two reflections, not on the
same line, calculate the corresponding d-value
We already know the
first point: 200.
200
2
94. Right upper zone:
Point 2
d
1.22 Å
1.11 Å
1.05 Å
Measure the distance of two reflections, not on the
same line, calculate the corresponding d-value
We already know the
first point: 200.
200
2
95. Look up in the table to which reflection this corresponds:
We know already it is either 151 or 131 or 042 or 153
1.05 Å 151
131
042
Point 2
d
Point 2
hkl
200
2
96. Look up in the table to which reflection this corresponds:
We know already it is either 151 or 131 or 042 or 153
1.05 Å 151
131
042
Point 2
d
Point 2
hkl
200
2
97. If this were not a tilt series...
Point 2 could have been at first sight
both 115 and 333...
In this case:
Can compare the experimental angles between reflections
to the theoretical angles
-either formulas from any standard crystallography work
-or simply simulate the different zones calculated for the
different options (JEMS, CrystalKit, Carine,...) to check this
Or in this particular case of 333: you would need to see 111 and 222 at 1/3 and 2/3 of the distance.
100. [001]
[015]-
[013]
-
[012]-
[035]-
[011]-
010
031 051
053
What if you didn’t know the material?
You would just need to check
more possibilities:
043
032
041021
[025]-
052 [014]-
[023]-
[034]-
When indexed correctly, the patterns in between
have to give you one of these as zone-index.
011
101. Pattern bottom left:
Point 2
d
Measure the distance of two reflections, not on the
same line, calculate the corresponding d-value
200
2
1.65 Å
1.58 Å
1.37 Å
102. Pattern bottom left:
Point 2
d
Measure the distance of two reflections, not on the
same line, calculate the corresponding d-value
200
2
1.65 Å
1.58 Å
1.37 Å
103. Look up in the table to which reflection this corresponds.
We know already it is either: 151 or 131 or 042 or 153
1.65 Å 042
131
153
Point 2
d
Point 2
hkl
200
2
104. Look up in the table to which reflection this corresponds.
We know already it is either: 151 or 131 or 042 or 153
1.65 Å
Point 2
d
Point 2
hkl
200
2
042
131
153
107. Make your analysis easier by not taking
ED patterns from separate crystals, but
taking different ED patterns from the
same crystallite, if possible.
=“Tilt series”
108. So now you have indexed these four patterns.
200
131
200
151
200111
200020
[001] [015]
-
[013]
-
[011]
-
109. ...indexed patterns give you info on fase,
orientation, cell parameters,...
200
131
200
151
200111
200020
[001] [015]
-
[013]
-
[011]
-
110. What if you do not have any prior
knowledge when you have to
index?
Analyse the patterns try to propose basis vectors
(For example reflections closest to the central beam)
Same system as previous slides:
can you index all reflections?
If not, adapt your choice of
basis vectors and try again.
111. If we do not know the space group, the next step would
be to determine it!
(maybe you started from 0 or you had only cell parameters from XRD or...)
200
131
200
151
200111
200020
[001] [015]
-
[013]
-
[011]
-
112. Reflection conditions
(SAED)
Space group?
P no reflection conditions
F h+k=2n, k+l=2n, h+l=2n
I h+k+l=2n
A/B/C k+l=2n/h+k=2n/h+k=2n
Point Group (CBED)
glide planes conditions on hk0/h0l/0kl
screw axes conditions on h00/0k0/00l
mirror planes, inversion
centre, rotation axes
no extra conditions
CBED
SAED
+
113. Reflection conditions can be looked up in tables in
International Tables for Crystallography Vol. A
Or using freeware such as Space Group Explorer
114. Be careful: forbidden reflections can occur because of
dynamical diffraction
Incident electron wave
120. hkl:
h+k+l=2n
h+k, k+l, h+l=2n
h+k=2n
Step 1: determine the reflection conditions from the patterns.
200
131
200
151
200111
200020
[001] [015]
-
[013]
-
[011]
-
For these patterns
both would be
good....!?
121. This means we do not have sufficient information.
we missed [012], which will make the difference.
-
By coincidence
200
042
123. This means we do not have sufficient information.
we missed [012], which will make the difference.
-
By coincidence
200
042 hkl:
h+k+l=2n
h+k, k+l, h+l=2n
h+k=2n
124. This means we do not have sufficient information.
we miss [012], which will make the difference.
-
By coincidence
200
042 hkl:
h+k+l=2n
h+k, k+l, h+l=2n
h+k=2n
For only h+k=2n there is no reason why
021 would be absent.
125. It is possible to draw the wrong
conclusions if you do not have
enough zones!
130. 00l:
no condition
l=2n
l=4n
Step 1: determine the reflection conditions from the patterns.
200
131
200
151
200111
200020
[001] [015]
-
[013]
-
[011]
-
200
042
131. 00l:
no condition
l=2n
l=4n
Step 1: determine the reflection conditions from the patterns.
200
131
200
151
200111
200020
[001] [015]
-
[013]
-
[011]
-
200
042
132. Step 2: look up the matching extinction
symbol in the International Tables of
Crystallography.
?
?
133. 200 and 020 could be due to double
diffraction...
200
131
200
151
200111
200020
[001] [015]
-
[013]
-
[011]
-
134. 200 and 020 could be due to double
diffraction...
Tilt around 200 until all other
reflections gone except h00 axis:
200
131
200
151
200111
200020
[001] [015]
-
[013]
-
[011]
-
135. 200 and 020 could be due to double
diffraction...
Tilt around 200 until all other reflections
gone except h00 axis:
200 does not disappear
It is not double diffraction
00l: l=2n
not 00l: l=4n
136. Step 2: look up the matching extinction symbol in
the International Tables of Crystallography.
138. From the reflection conditions you get
the extinction symbol:
F - - -
This still leaves 5 possible space groups
F23 Fm3 F432 F43m Fm3m
-- -
139. From the reflection conditions you get
the extinction symbol:
F - - -
This still leaves 5 possible space groups
F23 Fm3 F432 F43m Fm3m
Only difference: rotation axes and mirror planes
cannot be derived from reflection conditions
need CBED
- -
185. What would make a difference further?
For example:
-cell parameters
-look for a third zone etc.
-SAED for reflection conditions
186. For example, if you need
cell parameters a=b= 4.72 Å, c=3.16 Å
to be able to index all patterns,
the point group is
4/mmm
m3m
187. For example, if you need
cell parameters a=b= 4.72 Å, c=3.16 Å
to be able to index all patterns,
the point group is
4/mmm
m3m
188. CBED
SAED
Space Group P42/mnm
Then you would combine this again with reflection
conditions (not derived in this exercise) to get the
space group.
189. At the end of this lecture you should be able to
(1) index SAED patterns in case the cell parameters
are already known
(2) determine the possible space groups from SAED
patterns
(3) determine possible point groups from CBED
patterns
Combine (2) and (3) to find the space group.