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The TNRS: a Taxonomic Name Resolution Service for Plants

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Naim Matasci
Naim Matasci

iPlant presentation given at iEvoBio 2011

TecnologíaDesarrollo personal
1 de 22
The TNRS: a Taxonomic Name Resolution Service for Plants Naim Matasci (nmatasci@iplantcollaborative.org) The iPlant Collaborative iEvoBio 2011 Jun 21-22, 2011
What is iPlant?
Discovery Environment http://www.iplantcollaborative.org/discovery-environment-preview-access
 
Taxonomic uncertainty ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
a) Centaurium curvistamineum (Wittr.) Abrams (1951) b) Centaurium minimum (Howell) Piper (1915) c) Centaurium muhlenbergii (Griseb.) Wight ex Piper (1906) d) Centaurium muhlenbergii (Griseb.) Wight ex Piper forma albiflorum (Suksd.) St. John (1937) e) Centaurium muhlenbergii (Griseb.) Wight ex Piper var. albiflorum Suksd. (1927) f) Centaurodes muhlenbergii (Griseb.) Kuntze (1891) g) Erythraea curvistaminea Wittr. (1886) h) Erythraea minima Howell (1901) i) Erythraea muhlenbergii Griseb. (1839) Image: Gordon Leppig & Andrea J. Pickart
How to figure that out? … or ask around at My-Plant.org
Makemake at de.wikipedia
Non-existent names: Herbarium specimens ,[object Object],Total specimens: ,[object Object],Unique species names: ,[object Object],Published names (legitimate & illegitimate): ,[object Object],Misspelled names: ,[object Object],Specimens with misspelled names: ,[object Object]
Hans Hillewaert
 
Taxonomic Name Resolution Service ,[object Object],[object Object],[object Object]
 
 
 
Availability Source code (3-clause BSD) http://github.com/iPlantCollaborativeOpenSource/TNRS Web + API instructions http://tnrs.iplantcollaborative.org
 
 
 
 
Availability Source code (3-clause BSD) http://github.com/iPlantCollaborativeOpenSource/TNRS Web + API instructions http://tnrs.iplantcollaborative.org Questions, suggestions, collaborations [email_address]

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The TNRS: a Taxonomic Name Resolution Service for Plants

  • 1. The TNRS: a Taxonomic Name Resolution Service for Plants Naim Matasci (nmatasci@iplantcollaborative.org) The iPlant Collaborative iEvoBio 2011 Jun 21-22, 2011
  • 4.
  • 5.  
  • 6.
  • 7. a) Centaurium curvistamineum (Wittr.) Abrams (1951) b) Centaurium minimum (Howell) Piper (1915) c) Centaurium muhlenbergii (Griseb.) Wight ex Piper (1906) d) Centaurium muhlenbergii (Griseb.) Wight ex Piper forma albiflorum (Suksd.) St. John (1937) e) Centaurium muhlenbergii (Griseb.) Wight ex Piper var. albiflorum Suksd. (1927) f) Centaurodes muhlenbergii (Griseb.) Kuntze (1891) g) Erythraea curvistaminea Wittr. (1886) h) Erythraea minima Howell (1901) i) Erythraea muhlenbergii Griseb. (1839) Image: Gordon Leppig & Andrea J. Pickart
  • 8. How to figure that out? … or ask around at My-Plant.org
  • 10.
  • 12.  
  • 13.
  • 14.  
  • 15.  
  • 16.  
  • 17. Availability Source code (3-clause BSD) http://github.com/iPlantCollaborativeOpenSource/TNRS Web + API instructions http://tnrs.iplantcollaborative.org
  • 18.  
  • 19.  
  • 20.  
  • 21.  
  • 22. Availability Source code (3-clause BSD) http://github.com/iPlantCollaborativeOpenSource/TNRS Web + API instructions http://tnrs.iplantcollaborative.org Questions, suggestions, collaborations [email_address]

Notas del editor

  1. Bringing a culture of computing to the Plant Sciences.
  2. Parsing: GNI Parser Dmitry Mozzherin Matching: Taxamatch by Tony Rees