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Janus Update


                     Armando Oliva, M.D.
         Deputy Director for Bioinformatics
          Office of Critical Path Programs
              armando.oliva@fda.hhs.gov

                           March 10, 2009
The views expressed in this presentation are
 those of the speaker and not necessarily
 those of the Food and Drug Administration
 …
What is Janus?
• FDA’s Enterprise Program to improve
  management of structured scientific data
  – Clinical study data
  – Nonclinical study data
  – Pharmacogenomic (and other –omic) data
  – Product quality and manufacturing data
  – Post-market surveillance data
What will Janus do?
• Implementing data standards - Move
  towards a single information model: the
  HL7 Reference Information Model (RIM)
• Improving access: multiple interoperable
  data warehouses
• Support and improve analytic tools
Janus Activity - Governance
• Sept. 2008:
  – Janus approved by Bioinformatics Board as Agency-
    wide initiative
  – Previously Center-specific activities
     • Uncoordinated
     • Under-resourced
• January 2009:
  – FDA Management Council approved Janus funding
    from FY08 supplemental appropriations
Janus Architecture
Exchange Layer                                                 HL7 Messages (XML)


                                                                      RIM Database
Source Layer                                                        (Data Warehouse)


                                                        Janus Database              SPL Database
Database Layer                                        (Materialized Views)
                                                      (Materialized view)         (Materialized view)
                                                                                                Views)



Data Mart &
                                  CDISC SDTM             CDISC SEND                CDISC ADaM             FAERS Databases
Special Purpose                (Materialized Views)
                               (Analysis Views)       (Materialized Views)
                                                      (Analysis Views)          (Materialized Views)
                                                                                (Analysis Views)         (Materialized Views)
                                                                                                         (Analysis Views)
Layer

                                                                                               FAERS COTS
                          SAS                    JReview                  WebSDM                                          WebVDME
Analysis Layer                                                                                    Package
                  (Software Application)   (Software Application)   (Software Application   (Software Application)   (Software Application)
                                                                                            (Software Application)




Results Layer
                                                                        Results
Janus Architecture




                                                                                                                                                   Management
                                                                                                                                                      Data
Exchange Layer                                                       HL7 Messages (XML)
                                                                                                                    Common
                                                                                                                       EDR
                                                                           RIM Database
                                                                                 RIM Database
Source Layer                                                             (Data Warehouse)


                                            Clinical                Nonclinical                                                  Harmonized
                                                                                                                  Product Information
                                           Database                 Database                 Database n            Database (SPL)
Database Layer                               (NCI)                   (NCTR)                                                        Inventory

Data Mart &                 CDISC SDTM               CDISC SEND               CDISC ADaM                                        FAERS Database
                                                                                                                                    MedWatch+
                           (Analysis Views)         (Analysis Views)         (Analysis Views)             Data Mart n           (Analysis Views)
Special Purpose
Layer
                                                                                                                                       FAERS

                                                                                         FAERS COTS
Analysis           SAS                    JReview                Array Track               Package                 WebVDME                   Analysis
           (Software Application)   (Software Application)   (Software Application)   (Software Application)   (Software Application)       Software n
Layer




                                                                                                                                                         Analysis
Results Layer
                                                                               Results
Janus Architecture
•   Flexible, Modular, and Extensible
•   Leverages the HL7 RIM for healthcare information to promote
    interoperability both within and outside FDA
•   Open architecture and standards allow multiple plug-and-play
    solutions
•   Initial focus:
     –   Clinical study data
     –   Nonclinical study data
     –   Pharmacogenomic data
     –   Product Labeling, Registration, Listing data
     –   Post-marketing AE data
•   Additional interoperable databases, data marts, and tools can be
    added to accommodate additional scientific data streams
Now/Near Future
                                     SDTM XPT                      SEND XPT
Exchange Layer                                                                                                   HL7 ICSR XML



Source Layer                                                                                                                      (planned)



                                          Clinical                 Nonclinical
                                         Database                  Database
Database Layer                         (NCI Janus 1.x)          (NCTR Janus 1.x)



Data Mart &                 CDISC SDTM               CDISC SEND                                                FAERS Database
                           (Analysis Views)         (Analysis Views)                                           (Analysis Views)
Special Purpose
Layer


                                                                                                                         FAERS COTS
Analysis        WebSDM                    JReview                Array Track               ToxVision                       Package
           (Software Application)   (Software Application)   (Software Application)   (Software Application)          (Software Application)
Layer


Results Layer
                                                                               Results
Phase 1: Pre-market human study data
                                                                   SEND XPT
                                        SDTM XPT
Exchange Layer                                                       HL7 Messages (CDISC-HL7 XML)                HL7 ICSR XML


                                                                          RIM Database
Source Layer                                                            (Data Warehouse)                                          (planned)



                                           Clinical                Nonclinical
                                          Database                 Database
Database Layer                         (NCI Janus 2.0)          (NCTR Janus 1.x)



Data Mart &                 CDISC SDTM               CDISC SEND               CDISC ADaM                       FAERS Database
                           (Analysis Views)         (Analysis Views)         (Analysis Views)                  (Analysis Views)
Special Purpose
Layer


                                                                                                                         FAERS COTS
Analysis        WebSDM                    JReview                Array Track               ToxVision                       Package
           (Software Application)   (Software Application)   (Software Application)   (Software Application)          (Software Application)
Layer


Results Layer
                                                                               Results
Phase 2: Pre-market animal study data
                                                                   SEND XPT
Exchange Layer                                                       HL7 Messages (CDISC-HL7 XML)                HL7 ICSR XML


                                                                          RIM Database
Source Layer                                                            (Data Warehouse)                                          (planned)



                                          Clinical                 Nonclinical
                                         Database                  Database
Database Layer                         (NCI Janus 2.0)          (NCTR Janus 2.0)



Data Mart &                 CDISC SDTM               CDISC SEND               CDISC ADaM                       FAERS Database
                           (Analysis Views)         (Analysis Views)         (Analysis Views)                  (Analysis Views)
Special Purpose
Layer


                                                                                                                         FAERS COTS
Analysis        WebSDM                    JReview                Array Track               ToxVision                       Package
           (Software Application)   (Software Application)   (Software Application)   (Software Application)          (Software Application)
Layer


Results Layer
                                                                               Results
Phase 3: Post-market data
                                                                       HL7 Messages
Exchange Layer                                                     (CDISC-HL7; ICSR XML)                         HL7 ICSR XML


                                                                          RIM Database
Source Layer                                                            (Data Warehouse)

                                          Clinical                 Nonclinical
                                         Database                  Database
Database Layer                         (NCI Janus 2.0)          (NCTR Janus 2.0)



Data Mart &                 CDISC SDTM               CDISC SEND               CDISC ADaM                       FAERS Database
                           (Analysis Views)         (Analysis Views)         (Analysis Views)                  (Analysis Views)
Special Purpose
Layer


                                                                                                                         FAERS COTS
Analysis        WebSDM                    JReview                Array Track               ToxVision                       Package
           (Software Application)   (Software Application)   (Software Application)   (Software Application)          (Software Application)
Layer


Results Layer
                                                                               Results
Phase 4: Structured Product Information
                                                                     HL7 Messages                                      (already started)
Exchange Layer                                                 (CDISC-HL7; ICSR; SPL XML)


                                                                          RIM Database
Source Layer                                                            (Data Warehouse)

                                            Clinical               Nonclinical                                 Product Information
                                           Database                Database                                     Database (SPL)
Database Layer                            (Janus 2.0)           (NCTR Janus 2.0)



Data Mart &                 CDISC SDTM               CDISC SEND               CDISC ADaM                                   FAERS Database
                           (Analysis Views)         (Analysis Views)         (Analysis Views)                              (Analysis Views)
Special Purpose
Layer


                                                                                                                                        FAERS COTS
Analysis        WebSDM                    JReview                Array Track               ToxVision                                      Package
           (Software Application)   (Software Application)   (Software Application)   (Software Application)                         (Software Application)
Layer


Results Layer
                                                                               Results
Janus Activities for 2009
• Long-term planning
   – Assess/incorporate all Centers’ needs into long-term Agency
     roadmap / strategic plan for Janus
• Support ongoing pilots
   – Janus Phase 3 pilot for clinical data
       • Move NCI Janus 1.x at NCI to production for SDTM submissions
   – Phase 2 SEND pilot for nonclinical data
       • Test SEND and NCTR Janus 1.x for animal toxicology data
• Test CDISC-HL7 messages
   – RIM database for study data

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March 2009 DIA Janus Update

  • 1. Janus Update Armando Oliva, M.D. Deputy Director for Bioinformatics Office of Critical Path Programs armando.oliva@fda.hhs.gov March 10, 2009
  • 2. The views expressed in this presentation are those of the speaker and not necessarily those of the Food and Drug Administration …
  • 3. What is Janus? • FDA’s Enterprise Program to improve management of structured scientific data – Clinical study data – Nonclinical study data – Pharmacogenomic (and other –omic) data – Product quality and manufacturing data – Post-market surveillance data
  • 4. What will Janus do? • Implementing data standards - Move towards a single information model: the HL7 Reference Information Model (RIM) • Improving access: multiple interoperable data warehouses • Support and improve analytic tools
  • 5. Janus Activity - Governance • Sept. 2008: – Janus approved by Bioinformatics Board as Agency- wide initiative – Previously Center-specific activities • Uncoordinated • Under-resourced • January 2009: – FDA Management Council approved Janus funding from FY08 supplemental appropriations
  • 6. Janus Architecture Exchange Layer HL7 Messages (XML) RIM Database Source Layer (Data Warehouse) Janus Database SPL Database Database Layer (Materialized Views) (Materialized view) (Materialized view) Views) Data Mart & CDISC SDTM CDISC SEND CDISC ADaM FAERS Databases Special Purpose (Materialized Views) (Analysis Views) (Materialized Views) (Analysis Views) (Materialized Views) (Analysis Views) (Materialized Views) (Analysis Views) Layer FAERS COTS SAS JReview WebSDM WebVDME Analysis Layer Package (Software Application) (Software Application) (Software Application (Software Application) (Software Application) (Software Application) Results Layer Results
  • 7. Janus Architecture Management Data Exchange Layer HL7 Messages (XML) Common EDR RIM Database RIM Database Source Layer (Data Warehouse) Clinical Nonclinical Harmonized Product Information Database Database Database n Database (SPL) Database Layer (NCI) (NCTR) Inventory Data Mart & CDISC SDTM CDISC SEND CDISC ADaM FAERS Database MedWatch+ (Analysis Views) (Analysis Views) (Analysis Views) Data Mart n (Analysis Views) Special Purpose Layer FAERS FAERS COTS Analysis SAS JReview Array Track Package WebVDME Analysis (Software Application) (Software Application) (Software Application) (Software Application) (Software Application) Software n Layer Analysis Results Layer Results
  • 8. Janus Architecture • Flexible, Modular, and Extensible • Leverages the HL7 RIM for healthcare information to promote interoperability both within and outside FDA • Open architecture and standards allow multiple plug-and-play solutions • Initial focus: – Clinical study data – Nonclinical study data – Pharmacogenomic data – Product Labeling, Registration, Listing data – Post-marketing AE data • Additional interoperable databases, data marts, and tools can be added to accommodate additional scientific data streams
  • 9. Now/Near Future SDTM XPT SEND XPT Exchange Layer HL7 ICSR XML Source Layer (planned) Clinical Nonclinical Database Database Database Layer (NCI Janus 1.x) (NCTR Janus 1.x) Data Mart & CDISC SDTM CDISC SEND FAERS Database (Analysis Views) (Analysis Views) (Analysis Views) Special Purpose Layer FAERS COTS Analysis WebSDM JReview Array Track ToxVision Package (Software Application) (Software Application) (Software Application) (Software Application) (Software Application) Layer Results Layer Results
  • 10. Phase 1: Pre-market human study data SEND XPT SDTM XPT Exchange Layer HL7 Messages (CDISC-HL7 XML) HL7 ICSR XML RIM Database Source Layer (Data Warehouse) (planned) Clinical Nonclinical Database Database Database Layer (NCI Janus 2.0) (NCTR Janus 1.x) Data Mart & CDISC SDTM CDISC SEND CDISC ADaM FAERS Database (Analysis Views) (Analysis Views) (Analysis Views) (Analysis Views) Special Purpose Layer FAERS COTS Analysis WebSDM JReview Array Track ToxVision Package (Software Application) (Software Application) (Software Application) (Software Application) (Software Application) Layer Results Layer Results
  • 11. Phase 2: Pre-market animal study data SEND XPT Exchange Layer HL7 Messages (CDISC-HL7 XML) HL7 ICSR XML RIM Database Source Layer (Data Warehouse) (planned) Clinical Nonclinical Database Database Database Layer (NCI Janus 2.0) (NCTR Janus 2.0) Data Mart & CDISC SDTM CDISC SEND CDISC ADaM FAERS Database (Analysis Views) (Analysis Views) (Analysis Views) (Analysis Views) Special Purpose Layer FAERS COTS Analysis WebSDM JReview Array Track ToxVision Package (Software Application) (Software Application) (Software Application) (Software Application) (Software Application) Layer Results Layer Results
  • 12. Phase 3: Post-market data HL7 Messages Exchange Layer (CDISC-HL7; ICSR XML) HL7 ICSR XML RIM Database Source Layer (Data Warehouse) Clinical Nonclinical Database Database Database Layer (NCI Janus 2.0) (NCTR Janus 2.0) Data Mart & CDISC SDTM CDISC SEND CDISC ADaM FAERS Database (Analysis Views) (Analysis Views) (Analysis Views) (Analysis Views) Special Purpose Layer FAERS COTS Analysis WebSDM JReview Array Track ToxVision Package (Software Application) (Software Application) (Software Application) (Software Application) (Software Application) Layer Results Layer Results
  • 13. Phase 4: Structured Product Information HL7 Messages (already started) Exchange Layer (CDISC-HL7; ICSR; SPL XML) RIM Database Source Layer (Data Warehouse) Clinical Nonclinical Product Information Database Database Database (SPL) Database Layer (Janus 2.0) (NCTR Janus 2.0) Data Mart & CDISC SDTM CDISC SEND CDISC ADaM FAERS Database (Analysis Views) (Analysis Views) (Analysis Views) (Analysis Views) Special Purpose Layer FAERS COTS Analysis WebSDM JReview Array Track ToxVision Package (Software Application) (Software Application) (Software Application) (Software Application) (Software Application) Layer Results Layer Results
  • 14. Janus Activities for 2009 • Long-term planning – Assess/incorporate all Centers’ needs into long-term Agency roadmap / strategic plan for Janus • Support ongoing pilots – Janus Phase 3 pilot for clinical data • Move NCI Janus 1.x at NCI to production for SDTM submissions – Phase 2 SEND pilot for nonclinical data • Test SEND and NCTR Janus 1.x for animal toxicology data • Test CDISC-HL7 messages – RIM database for study data