Jonathan Eisen talk for #ASM2012 on "#microBEnet - the microbiology of the built environment network"
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Talk by Jonathan Eisen for #ASM2012 meeting. Video of talk is here http://youtu.be/sIsHURTted0
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Similar a Jonathan Eisen talk for #ASM2012 on "#microBEnet - the microbiology of the built environment network"
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Jonathan Eisen talk for #ASM2012 on "#microBEnet - the microbiology of the built environment network"
- 1. The Great Indoors: Recent Advances in the Ecology of Built Environments #ASM2012 Convener: Brendan Bohannan Tuesday, June 26, 12
- 2. The Great Indoors: Recent Advances in the Ecology of Built Environments #ASM2012 Convener: Brendan Bohannan Jonathan Eisen Tuesday, June 26, 12
- 3. • 3:00-3:30 Jonathan Eisen • microBEnet • 3:30-3:45 Nicholas Be • Air Microbiome • 3:45-4:00 Katie Kirsch • Hotel rooms • 4:00-4:30 Mark Hernandez • Airborne microbes • 4:30-4:45 John Senko • Flue gas microbes • 4:45-5:00 Kimberly Ross • Drinking water • 5:00-5:30 Jordan Peccia • Aspergillus indoors Tuesday, June 26, 12
- 4. The Microbiology of the Built Environment Network http://microBE.net Jonathan A. Eisen UC Davis @phylogenomics Tuesday, June 26, 12
- 5. Microbes in the Built Environment: Why Care? • The BE is a large part of our niche • Buildings, planes, cars, etc. • The BE can be considered a model system for studying microbial ecology and diversity • defined components • controllable inputs and outputs • many replicates possible • Microbes in the BE likely influence • Human health • Human microbiome • BE ecology Tuesday, June 26, 12
- 6. History • Interest in microbes in the built environment is nothing new • Most focus historically has been: • on pathogens • done using culturing • New approaches possible • culture independent (e.g., DNA sequencing) • rapid decreases in cost / difficulty • also applies to culture-based studies Tuesday, June 26, 12
- 7. But ... Tuesday, June 26, 12
- 8. But ... • Culture independent approaches have taken off in many areas of microbial studies • Ocean microbiology • Human microbiome • Genomics taken off too • Microbes of phylogenetic, economic, health, ecological interest • But ... • Not been so fast an uptake in BE studies Tuesday, June 26, 12
- 9. How to accelerate progress? Tuesday, June 26, 12
- 10. How to accelerate progress? • $$$ • Recruitment • Openness • Communication • New Technology • Education Tuesday, June 26, 12
- 11. How to accelerate progress? • $$$ - Sloan Foundation • Recruitment • Openness • Communication • New Technology • Education Tuesday, June 26, 12
- 12. Sloan Program • Alfred P. Sloan Foundation funded a few “pilot” studies in microbiology of the built environment • Launched larger program a few years ago with calls for proposals in multiple areas including • Database/informatics • Center • Network Tuesday, June 26, 12
- 13. How to accelerate progress? • $$$ • Recruitment • Openness • Communication • New Technology • Education Tuesday, June 26, 12
- 14. microBEnet the microbiology of the Built Environment network microBEnet http://microbe.net Tuesday, June 26, 12
- 15. microBEnet: Who? • UC Davis: • Jonathan Eisen • David Coil • Mary Jo Seminoff • Holly Bik • Tom Olson • many undergrads • Building Ecology Research Group: • Hal Levin • Other collaborators • Jessica Green • Jack Gilbert Tuesday, June 26, 12
- 16. microBEnet Targets • Those funded by Sloan Program • Anyone in related fields w/ current or potential interest in microBE • Stakeholders Tuesday, June 26, 12
- 17. microBEnet Activities 1.Web site/hub 2.Organizing meetings and workshops 3.Creating and curating resources 4.Social media activities 5.Teaching how to share Tuesday, June 26, 12
- 18. 1. Web Site/Hub • http://microBE.net • Tuesday, June 26, 12
- 19. 2. Meetings & Workshops • Indoor Air 2011 • Citizen Microbiology 2011 • AAAS 2012 • GSC13 - Shenzen 2012 • Healthy Buildings 2012 • Lake Arrowhead Small Genomes 2012 • ASM 2012 (done mostly by Brendan Bohannan of BioBE Center) Tuesday, June 26, 12
- 20. 2. Meetings • IDEAS WANTED Tuesday, June 26, 12
- 21. 3. Resources Tuesday, June 26, 12
- 22. Simple guides Tuesday, June 26, 12
- 23. Simple Guides Tuesday, June 26, 12
- 24. Reference Collections Tuesday, June 26, 12
- 25. Sloan Program Tuesday, June 26, 12
- 26. Other resources • Meeting reports • Compilation of government reports • Calendar • Funding opportunities • Many others in development Tuesday, June 26, 12
- 27. 3. Resources • IDEAS WANTED Tuesday, June 26, 12
- 28. 4. Social Media Tuesday, June 26, 12
- 29. microBEnet blog Tuesday, June 26, 12
- 30. Other Blogs of Interest • BE blogs • Microbiology blogs • Feeds into microBEnet Tuesday, June 26, 12
- 31. Social Media • Facebook • LinkedIn • Mendeley • Slideshare • YouTube Channel • Twitter posts • etc. Tuesday, June 26, 12
- 32. RSS Feeds • Pull in blog posts and news from other sources • Updates to social media • New papers • Twitter feed Tuesday, June 26, 12
- 33. 5. How to share • Give a man a fish and you feed him for a day. Teach a man to fish and you feed him for a lifetime. • Share something for someone and you help them for a day. Teach them to share and you help them and everyone for a lifetime. Tuesday, June 26, 12
- 34. Sharing ... • How to post slides to Slideshare • How to record audio and video of talks from laptop • How to post to Mendeley • How to use Social Media for work • Benefits of open access publishing • Benefits of open data release Tuesday, June 26, 12
- 35. Tuesday, June 26, 12
- 36. Future • Love to host any resources you have that could be helpful • Guest blog posts • Latest papers with background • More targeted workshops to develop interactions • Undergrad education • K-12 outreach • Public outreach Tuesday, June 26, 12
- 37. Thanks • Alfred P. Sloan Foundation • Hal Levin, David Coil, Mary Jo Seminoff, Tom Olson, Holly Bik • Others working in microBE topics Tuesday, June 26, 12