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MADE BY:
PRATEEK KUMAR
MSC BIOINFORMATICS
Gene of known function and location
Gene that allows studying the inheritance of that gene
Genetic information resides in the genome
Genetic Marker
Any phenotypic difference controlled by genes, that can be
used for studying recombination processes or selection of a more
or less closely associated target gene
Anything in the genome that is variable and can be used to
compare individuals
Detectable allelic variation on a chromosome can be a
phenotype, can also be a unique detectable sequence of DNA
Marker is a piece of DNA
molecule that is
associated with a certain
trait of a organism
Types of
Markers
Morphological
Biochemical Genetic
Chromosomal
Animals are selected based on
appearance
Eg. PIGMENTATION
Disadvantage: lack of polymorphism
Animals are selected based on biochemical
properties
Eg. Hb, AMYLASE, BLOOD GROUPS ETC.
Disadvantage:
Sex limited
Age dependent
Influenced by environment
It covers less than 10% of genome
Animals are selected based on
structural & numerical variations
Eg. Structural and Numerical Variations
Structural- Deletions, Insertions etc.
Numerical- Trisomy, Monosomy, Nullysomy
Disadvantage: low polymorphism
 Organism can be differentiated by analysis of patterns derived from cleavage of their
DNA.
Technique is mainly based on the special enzyme called Restriction Endonucleases.
In RFLP restriction enzyme digested DNA is resolved by gel electrophoresis and then
blotted to a nitro cellulose membrane.
Specific binding pattern can be visualized by hybridization with labeled probe.
Different size or length of restriction fragments are produced such polymorphism
are used to distinguish plant species, genotype etc.
RAPD, AFLP AND RFLP ANALYSIS
RAPD, AFLP AND RFLP ANALYSIS
RAPD, AFLP AND RFLP ANALYSIS
RAPD, AFLP AND RFLP ANALYSIS
RAPD, AFLP AND RFLP ANALYSIS
RAPD, AFLP AND RFLP ANALYSIS
RAPD, AFLP AND RFLP ANALYSIS
RAPD, AFLP AND RFLP ANALYSIS
RAPD, AFLP AND RFLP ANALYSIS
RAPD, AFLP AND RFLP ANALYSIS

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RAPD, AFLP AND RFLP ANALYSIS

  • 1. MADE BY: PRATEEK KUMAR MSC BIOINFORMATICS
  • 2. Gene of known function and location Gene that allows studying the inheritance of that gene Genetic information resides in the genome Genetic Marker Any phenotypic difference controlled by genes, that can be used for studying recombination processes or selection of a more or less closely associated target gene Anything in the genome that is variable and can be used to compare individuals Detectable allelic variation on a chromosome can be a phenotype, can also be a unique detectable sequence of DNA
  • 3. Marker is a piece of DNA molecule that is associated with a certain trait of a organism Types of Markers Morphological Biochemical Genetic Chromosomal
  • 4. Animals are selected based on appearance Eg. PIGMENTATION Disadvantage: lack of polymorphism
  • 5. Animals are selected based on biochemical properties Eg. Hb, AMYLASE, BLOOD GROUPS ETC. Disadvantage: Sex limited Age dependent Influenced by environment It covers less than 10% of genome
  • 6. Animals are selected based on structural & numerical variations Eg. Structural and Numerical Variations Structural- Deletions, Insertions etc. Numerical- Trisomy, Monosomy, Nullysomy Disadvantage: low polymorphism
  • 7.
  • 8.  Organism can be differentiated by analysis of patterns derived from cleavage of their DNA. Technique is mainly based on the special enzyme called Restriction Endonucleases. In RFLP restriction enzyme digested DNA is resolved by gel electrophoresis and then blotted to a nitro cellulose membrane. Specific binding pattern can be visualized by hybridization with labeled probe. Different size or length of restriction fragments are produced such polymorphism are used to distinguish plant species, genotype etc.