Ncbi Ncbi tools Ncbi database Blast

1. Subject:- computational Biology
Presentation on
Supervised by-
Dr. Bibhudutta Mishra
Presented by- IPSITA SAHOO
Reg. no- 200705180160

2. CONTENTS
NCBI
• Home page
• About
Tools and database of NCBI
• BLAST
• Types of BLAST
• Home page
• Databases
References

3.  NCBI stands for “National Center for
Biotechnology Information”
 It is part of the United States National Library of
Medicine (NLM), a branch of the National Institutes
of Health (NIH).
 It is approved and funded by the government of
the United States.
 The NCBI is located in Bethesda, Maryland and
was founded in 1988 through legislation sponsored
by US Congressman Claude Pepper.
 The NCBI houses a series of databases relevant
to biotechnology and biomedicine and is an
important resource for bioinformatics tools and
services.
 Major databases include GenBank for DNA
sequences and PubMed, a bibliographic database for
biomedical literature. Other databases include
the NCBI Epigenomics database. All these databases
are available online through the Entrez search
engine.
NCBI

4. Home page of NCBI

6. Tools and Databases of NCBI

9. Home page of BLAST

10. Nucleotide database-
The Nucleotide sequence database is a collection of sequences from GenBank, RefSeq,
and Third Party Annotation (TPA). Genome, gene and transcript sequence data provide
the foundation for biomedical research and discovery.
Protein sequence database-
The Protein sequence database is a collection of data from several sources, including
translations from annotated coding regions in GenBank, RefSeq and TPA, as well as
records from SwissProt, PIR, PRF, and PDB.
Structural databases-
Structural databases are essential tools for all crystallographic work and often need to be
consulted at several stages of the process of producing, solving, refining and publishing
the structure of a new material.
OMIM - Online Mendelian Inheritance in Man-
OMIM is a comprehensive, authoritative compendium of human genes and genetic
phenotypes that is freely available and updated daily. OMIM is authored and edited at the
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of
Medicine, under the direction of Dr. Ada Hamosh. Its official home is omim.org.
Some databases of NCBI

11.  My subject teacher: Mr. Bibhudutta Mishra
 Dr. Yashaswi Nayak, HoD and Dean SoAS
 All the Faculty members of Department of Zoology, School of
Applied sciences, CUTM
 Family and friends
Acknowledgements
Reference
National Center for Biotechnology Information (US). (2013). The NCBI
handbook. National Center for Biotechnology Information (US).