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Similar a Gmod update-2013-04
Similar a Gmod update-2013-04 (12)
Gmod update-2013-04
- 1. Current Work, Future Directions GMOD Spring Meeting 2013
- 2. For those who don't know, is: ● A data integration system ● An optimising data warehouse ● A set of web-services ● A collection of graphical data exploration and analysis tools ● Dedicated to putting bio-informatics tools in the hands of biologists.
- 3. For those who don't know, is: ● In use at:
- 4. In overview: Data Loaders
- 5. In overview: Web Application Embedded Web Widgets Services Scripts
- 6. Easy as one, two, three... ● Write some XML ● Load data ● Release to the world with – a graphical data-mining system – a fully capable set of web-services
- 7. What's new? ● New! interactive tables ● New! analysis tools ● New! documentation site ● New! github repos ● New! js client library
- 8. Driven by web-services ● GET /model ● GET /templates ● POST /query/results ● GET /lists ● GET /list/enrichment ● ...
- 12. If we can do it, so can you! ● Client libraries in perl, python, ruby, java, and javascript ● We eat our own dog food – web application built on javascript library – In house tools in perl and python ● Code generation to get you started
- 13. Benefits of building on InterMine
- 14. Free (and not just as in beer)
- 16. Gos Micklem (PI) Daniela Butano Adrian Carr Sergio Contrino Hu Fengyuan Mike Lyne Rachel Lyne Alex Kalderimis Radek Štěpán Julie Sullivan dev@intermine.org http://www.intermine.org alex@intermine.org
- 17. Gos Micklem (PI) Daniela Butano Adrian Carr Sergio Contrino Hu Fengyuan Mike Lyne Rachel Lyne Alex Kalderimis Radek Štěpán Julie Sullivan dev@intermine.org http://www.intermine.org alex@intermine.org https://github.com/intermine
Notas del editor
- Good to follow Dave - similar themes: - benefits of exploration (constructive feedback) - Client side work - Centralised resources and open-source software - read-the-docs - api
- In the past week we have have had help requests from: * France * India * Austria * Canada * USA
- In browser demo
- In browser demo
- Go through browser demos In browser console demo here...
- Dave time, effort, and money Access to a treasure trove of data: High quality curated data-sets freely available Messy data → Clean data Common currency: One API for multiple organisms/communities Introspectable data-model and queries → build once for multiple domains True query freedom - join multiple data sets, select any columns, any constraints, any sort-order LGPL, open standards, postgres, json, xml, ...
- LGPL, open standards, postgres, json, xml, ...
- Keeping the best parts of our interface Building a system out of composable parts Designing a powerful data exploration system Future users will still have a powerful system out of the box, but also have access to a common space where different parts can be put together.