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Data Management and
Analysis
IPMS Workshop on Alternatives for Improving Field AI Delivery
System to Enhance Beef and Dairy Production in Ethiopia
ILRI, Addis Ababa, 24-25 August 2011
Zerihun Taddese
ILRI/ICRAF Research Methods Group
Content
• Introduction and Objectives
• Data Management
• Data Analysis
ZT (ILRI-ICRAFJan 30, 2015 2
Introduction and Objectives
Introduction:
• IPMS experience in mass insemination of cows
– Lack of record keeping and reporting by AI service providers!!
– Lack of confidence in believing the results reported!!
• Four regional states are selected (viz., Tigray, Amhara,
Oromia and SNNPRS)
• Results of intervention work is promising
• Simulated data are used to demonstrate this success.
ZT (ILRI-ICRAFJan 30, 2015 3
Introduction and Objectives (Cont’d)
Objective:
• To share experience in data management and
analysis
The HOWs:
• Managing the data
• Analyzing the data
ZT (ILRI-ICRAFJan 30, 2015 4
Data Management (Cont’d)
Refers to any activity concerned with
• Planning data management,
– objectives
– outputs
– resources and
– skills available.
• Designing data recording format
• Collection of data, with appropriate quality control
• Checking of raw data
ZT (ILRI-ICRAFJan 30, 2015 5
Data Management (Cont’d)
Refers to any activity concerned with (Cont’d)
• Cleaning data
• Keep back up of the data
• Preparing for analysis
• Maintaining records of the processing steps
• Archiving the data for future use
ZT (ILRI-ICRAFJan 30, 2015 6
Data Management (Cont’d)
Some Examples:
• Mostly refers to collecting data. DATA
• Designing the data capturing format: FORM.doc
• The design and organization of our computer
files: AI Record Sheet.xls
• One of the regions data: Tigrai.xls
• Store all of the relevant information required with
maximum care (Quality assurance)
ZT (ILRI-ICRAFJan 30, 2015 7
Data Analysis
• Choice of a Statistical Software
Genstat.lnk
ZT (ILRI-ICRAFJan 30, 2015 8
Data Analysis (Cont’d)
• What statistical procedures do you need?
• What platform – Windows, Macintosh, Unix?
• Balance among
– Ease of learning and use
– Power, expandability, flexibility
– Data management and sharing data with other
statistical packages.
– Innovativeness
– Graphical capabilities
• Cost!
ZT (ILRI-ICRAFJan 30, 2015 9
Data Analysis (Cont’d)
Study Design
• What was the question that prompted the research?
• The research question must be articulated clearly,
concisely, and accurately.
How will relations between factors be quantified?
• What parameter are to be estimated?
• How large was the sample to ensure a sufficiently
precise answer?
• Was the study Experimental or Survey?
Start with DUMMY tables.
ZT (ILRI-ICRAFJan 30, 2015 10
Data Analysis (Cont’d)
Choosing Statistical Techniques:
• Descriptive Statistics
• Inferential Statistics
– Nominal – Χ2
– test of association
– Ordinal – methods based on ranks
– Interval
– Ratio
– Modeling Logistic Multiple Linear
Regression
Non-parametric
Parametric
DISCRETE & CONTINUOUS
Nominal Interval
Ordinal Ratio
ZT (ILRI-ICRAFJan 30, 2015 11
Data Analysis (Cont’d)
SAS was used to analyze the simulated data.
– Importing the four Excel data files from the regions
– Merging the data sets from the regions
• A few examples of questions answered from
analysis.
– WHAT % OF PREGNANCY RESPONDED TO OESTRUS AMONG
TREATED?
– WHAT PROPORTION OF COWS RESPONDED TO HORMON
TREATMENT?
– AMONG THOSE WHO RESPONDED, WHAT IS THE AVERAGE
RESPONSE INTERVAL?
ZT (ILRI-ICRAFJan 30, 2015 12
Data Analysis (Cont’d)
• A few examples of questions answered from
analysis (Cont’d).
– WHAT IS THE PERCENTAGE OF PREGNANCY RESULT
BY DIFFERENT FACTORS?
– COMPARISON OF PREGNANCY RESULT AMONG THE
BULLS, AI TECHNICIAN, BREED, and PARITY
respectively
– WHAT ARE THE FACTORS INFLUENCING OESTRUS
RESPONSE?
ZT (ILRI-ICRAFJan 30, 2015 13
Data Analysis (Cont’d)
SAS program leading to the following results
– Pregnancy result was 86.1% .
– Oestrus response was 86.5%.
– The mean Oestrus response was 4.36 days with
SD = 1.41 days.
ZT (ILRI-ICRAFJan 30, 2015 14
Data Analysis (Cont’d)Table 1: Oestrus Response for some selected characteristics
Number (%) X2
P-value
Breed 1.320 0.2506
Local 226 (66.18)
Cross 117(33.82)
Body Condition Score 8.5856 0.0353
3 152 (43.93)
4 74 (21.39)
5 76 (21.97)
6 44 (12.72)
Lactation Status 8.3583 0.0038
No 219 (63.29)
Yes 127 (36.71)
Parity 11.5754 0.0031
Heifer (0) 88 (25.43)
Young (1,2,3) 202 (58.38)
Old (> 3) 56(16.18)
ZT (ILRI-ICRAFJan 30, 2015 15
Data Analysis (Cont’d)Table 2: Pregnancy Results for some selected characteristics
Number (%) X2
P-value
Breed 1.128 0.2881
Local 194 (65.1)
Cross 104 (34.9)
Body Condition Score 4.9590 0.1748
3 137 (45.97)
4 64 (21.48)
5 62 (20.81)
6 35 (11.74)
Lactation Status 1.9988 0.1574
No 193 (64.47)
Yes 105 (35.23)
Parity 36.5492 0.0001
Heifer (0) 71(23.83)
Young (1,2,3) 191 (64.09)
Old (> 3) 36(12.08)
ZT (ILRI-ICRAFJan 30, 2015 16
Data Analysis (Cont’d)Table 3: Binary Logit estimates for the Odds Ratios associated with
the selected variables affecting Oestrus Response.
Selected OR 95.0% C.I.
Variables for OR*
Breed 1.134 0.566-2.27
Lactation Status 4.050 1.789-9.167
BCS 3 vs 6 3.297 1.355-8.020
BCS 4 vs 6 2.058 0.817-5.187
BCS 5 vs 6 1.494 0.600-3.723
Heifer vs Old 2.700 1.163-6.268
Young vs Old 3.750 1.769-7.951
*CIs including ‘1’ are not significant at p = 0.05.
ZT (ILRI-ICRAFJan 30, 2015 17
Data Analysis (Cont’d)Table 4: Binary Logit estimates for the Odds Ratios associated with
the selected variables affecting Pregnancy Results .
Selected OR 95.0% C.I.
Variables for OR*
Breed 1.396 0.665-2.933
Lactation Status 0.716 0.357-1.434
BCS 3 vs 6 1.456 0.527-4.021
BCS 4 vs 6 1.616 0.539-4.846
BCS 5 vs 6 0.881 0.297-2.614
Heifer vs Old 2.319 0.991-5.429
Young vs Old 9.201 3.964-21.358
*CIs including ‘1’ are not significant at p = 0.05.
ZT (ILRI-ICRAFJan 30, 2015 18
THANK YOU!!
ZT (ILRI-ICRAFJan 30, 2015 19

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Data management and analysis

  • 1. Data Management and Analysis IPMS Workshop on Alternatives for Improving Field AI Delivery System to Enhance Beef and Dairy Production in Ethiopia ILRI, Addis Ababa, 24-25 August 2011 Zerihun Taddese ILRI/ICRAF Research Methods Group
  • 2. Content • Introduction and Objectives • Data Management • Data Analysis ZT (ILRI-ICRAFJan 30, 2015 2
  • 3. Introduction and Objectives Introduction: • IPMS experience in mass insemination of cows – Lack of record keeping and reporting by AI service providers!! – Lack of confidence in believing the results reported!! • Four regional states are selected (viz., Tigray, Amhara, Oromia and SNNPRS) • Results of intervention work is promising • Simulated data are used to demonstrate this success. ZT (ILRI-ICRAFJan 30, 2015 3
  • 4. Introduction and Objectives (Cont’d) Objective: • To share experience in data management and analysis The HOWs: • Managing the data • Analyzing the data ZT (ILRI-ICRAFJan 30, 2015 4
  • 5. Data Management (Cont’d) Refers to any activity concerned with • Planning data management, – objectives – outputs – resources and – skills available. • Designing data recording format • Collection of data, with appropriate quality control • Checking of raw data ZT (ILRI-ICRAFJan 30, 2015 5
  • 6. Data Management (Cont’d) Refers to any activity concerned with (Cont’d) • Cleaning data • Keep back up of the data • Preparing for analysis • Maintaining records of the processing steps • Archiving the data for future use ZT (ILRI-ICRAFJan 30, 2015 6
  • 7. Data Management (Cont’d) Some Examples: • Mostly refers to collecting data. DATA • Designing the data capturing format: FORM.doc • The design and organization of our computer files: AI Record Sheet.xls • One of the regions data: Tigrai.xls • Store all of the relevant information required with maximum care (Quality assurance) ZT (ILRI-ICRAFJan 30, 2015 7
  • 8. Data Analysis • Choice of a Statistical Software Genstat.lnk ZT (ILRI-ICRAFJan 30, 2015 8
  • 9. Data Analysis (Cont’d) • What statistical procedures do you need? • What platform – Windows, Macintosh, Unix? • Balance among – Ease of learning and use – Power, expandability, flexibility – Data management and sharing data with other statistical packages. – Innovativeness – Graphical capabilities • Cost! ZT (ILRI-ICRAFJan 30, 2015 9
  • 10. Data Analysis (Cont’d) Study Design • What was the question that prompted the research? • The research question must be articulated clearly, concisely, and accurately. How will relations between factors be quantified? • What parameter are to be estimated? • How large was the sample to ensure a sufficiently precise answer? • Was the study Experimental or Survey? Start with DUMMY tables. ZT (ILRI-ICRAFJan 30, 2015 10
  • 11. Data Analysis (Cont’d) Choosing Statistical Techniques: • Descriptive Statistics • Inferential Statistics – Nominal – Χ2 – test of association – Ordinal – methods based on ranks – Interval – Ratio – Modeling Logistic Multiple Linear Regression Non-parametric Parametric DISCRETE & CONTINUOUS Nominal Interval Ordinal Ratio ZT (ILRI-ICRAFJan 30, 2015 11
  • 12. Data Analysis (Cont’d) SAS was used to analyze the simulated data. – Importing the four Excel data files from the regions – Merging the data sets from the regions • A few examples of questions answered from analysis. – WHAT % OF PREGNANCY RESPONDED TO OESTRUS AMONG TREATED? – WHAT PROPORTION OF COWS RESPONDED TO HORMON TREATMENT? – AMONG THOSE WHO RESPONDED, WHAT IS THE AVERAGE RESPONSE INTERVAL? ZT (ILRI-ICRAFJan 30, 2015 12
  • 13. Data Analysis (Cont’d) • A few examples of questions answered from analysis (Cont’d). – WHAT IS THE PERCENTAGE OF PREGNANCY RESULT BY DIFFERENT FACTORS? – COMPARISON OF PREGNANCY RESULT AMONG THE BULLS, AI TECHNICIAN, BREED, and PARITY respectively – WHAT ARE THE FACTORS INFLUENCING OESTRUS RESPONSE? ZT (ILRI-ICRAFJan 30, 2015 13
  • 14. Data Analysis (Cont’d) SAS program leading to the following results – Pregnancy result was 86.1% . – Oestrus response was 86.5%. – The mean Oestrus response was 4.36 days with SD = 1.41 days. ZT (ILRI-ICRAFJan 30, 2015 14
  • 15. Data Analysis (Cont’d)Table 1: Oestrus Response for some selected characteristics Number (%) X2 P-value Breed 1.320 0.2506 Local 226 (66.18) Cross 117(33.82) Body Condition Score 8.5856 0.0353 3 152 (43.93) 4 74 (21.39) 5 76 (21.97) 6 44 (12.72) Lactation Status 8.3583 0.0038 No 219 (63.29) Yes 127 (36.71) Parity 11.5754 0.0031 Heifer (0) 88 (25.43) Young (1,2,3) 202 (58.38) Old (> 3) 56(16.18) ZT (ILRI-ICRAFJan 30, 2015 15
  • 16. Data Analysis (Cont’d)Table 2: Pregnancy Results for some selected characteristics Number (%) X2 P-value Breed 1.128 0.2881 Local 194 (65.1) Cross 104 (34.9) Body Condition Score 4.9590 0.1748 3 137 (45.97) 4 64 (21.48) 5 62 (20.81) 6 35 (11.74) Lactation Status 1.9988 0.1574 No 193 (64.47) Yes 105 (35.23) Parity 36.5492 0.0001 Heifer (0) 71(23.83) Young (1,2,3) 191 (64.09) Old (> 3) 36(12.08) ZT (ILRI-ICRAFJan 30, 2015 16
  • 17. Data Analysis (Cont’d)Table 3: Binary Logit estimates for the Odds Ratios associated with the selected variables affecting Oestrus Response. Selected OR 95.0% C.I. Variables for OR* Breed 1.134 0.566-2.27 Lactation Status 4.050 1.789-9.167 BCS 3 vs 6 3.297 1.355-8.020 BCS 4 vs 6 2.058 0.817-5.187 BCS 5 vs 6 1.494 0.600-3.723 Heifer vs Old 2.700 1.163-6.268 Young vs Old 3.750 1.769-7.951 *CIs including ‘1’ are not significant at p = 0.05. ZT (ILRI-ICRAFJan 30, 2015 17
  • 18. Data Analysis (Cont’d)Table 4: Binary Logit estimates for the Odds Ratios associated with the selected variables affecting Pregnancy Results . Selected OR 95.0% C.I. Variables for OR* Breed 1.396 0.665-2.933 Lactation Status 0.716 0.357-1.434 BCS 3 vs 6 1.456 0.527-4.021 BCS 4 vs 6 1.616 0.539-4.846 BCS 5 vs 6 0.881 0.297-2.614 Heifer vs Old 2.319 0.991-5.429 Young vs Old 9.201 3.964-21.358 *CIs including ‘1’ are not significant at p = 0.05. ZT (ILRI-ICRAFJan 30, 2015 18