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Modeling the effect of improved diagnostics
and antibiotic treatment on the dynamics of
Contagious Bovine Pleuropneumonia (CBPP)
November 2013

Amos Ssematimba* and Jeffrey Mariner
Epidemics 4 conference, 2013, Amsterdam, The Netherlands, 19-22 November 2013

Methods II: modeling details

Background
CBPP is a livestock disease that has continuously
devastated the industry in the sub-Saharan
Africa.
Control intervention is mainly through
vaccination but seems unsuccessful due to
vaccine- and management-specific factors.
Currently, uninformed use of antibiotics is
rampant in the field; much as it is against OIE
recommendations.
• studies to unravel the “myths” about their use
are in place with hope to guide reconsideration
of the OIE position.

Above: Reported CBPP cases (red) 2010-2013; Below left: Cow
standing legs apart and extended neck, a sign of CBPP; Below
right: A typical encapsulation in the lungs of a CBPP “recovered”
animal

Methods I: The model

Currently, better diagnostic tools are being
sought and antibiotic efficacies being assessed. •

Study aims

•

Given the current CBPP research interests,
there is need for predictive tools to guide
field implementation of the improved
control strategies.

Pictures

• Assumed a gamma-distributed waning of
vaccine induced immunity (i.e. method
of steps); protection=8months.
• A seasonally forced transmission rate:
𝛽 𝑡 = 𝛽0 1 + 𝐴sin 2𝜋𝑡 with 𝛽0 =0.5.
• Effects of pulse vaccination or treatment
scenarios are explored in isolated herd.
• Six year period is simulated in a herd of
500 (S=205, E=10, I=10, R=275) heads.
• Treated animals are assumed 50% less
infectious.
• New recruits are all susceptible to CBPP
and for clarity, between herd mixing is
ignored in the comparison.
Sample graphical results

SVEIRQT compartmental model
implemented stochastically using
Gillespie direct algorithm.
incorporates vaccination and
treatment.

The aim here is to develop mathematical
models to assess how effectively antibiotics
can be used in the field as supplements to
vaccination campaigns.

Preliminary results

Conclusions and next steps

Simulation outcomes for the different interventions

Antibiotic treatment can provide the much wanted
supplement to the current vaccination campaigns and should
be supported.
Synchronizing intervention at regional level is paramount due
to the cross-boarder animal movements.
Cheaper diagnostic tools should be availed to aid CBPP
identification and better antibiotics with higher cure rate are
needed.
Next step: obtain field data to calibrate the models .

Intervention scenario

Cure rate/ detected
Extinction Epidemic
fraction/ vaccination chance
duration
coverage
(%)
(days)

a) Annual pulse
vaccination

30%

72

1194

315

110

90%

100

996

222

77

b) Treatment (default
detected fraction=80%);
different cure rates

1/7 per week

13

1296

526

29

1/2 per week

100

322

18

1

65

937

254

18

77

808

193

8

c) Treatment (default cure 20%
rate = 1/4.5 per week):
different detected fraction 90%

Cumulative
number of
cases

Cumulative
number of CBPPinduced deaths

Amos Ssematimba
a.ssematimba@cgiar.org ● Box 30709 Nairobi Kenya ● +254 20 422 3867
Nairobi Kenya ● ilri.org
This project was funded by BBSRC and partly by BMZ
This document is licensed for use under a Creative Commons Attribution –Non commercial-Share Alike 3.0
Unported License November 2013

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Training state-of-the-art general text embedding
 

Modeling the effect of improved diagnostics and antibiotic treatment on the dynamics of Contagious Bovine Pleuropneumonia (CBPP)

  • 1. Modeling the effect of improved diagnostics and antibiotic treatment on the dynamics of Contagious Bovine Pleuropneumonia (CBPP) November 2013 Amos Ssematimba* and Jeffrey Mariner Epidemics 4 conference, 2013, Amsterdam, The Netherlands, 19-22 November 2013 Methods II: modeling details Background CBPP is a livestock disease that has continuously devastated the industry in the sub-Saharan Africa. Control intervention is mainly through vaccination but seems unsuccessful due to vaccine- and management-specific factors. Currently, uninformed use of antibiotics is rampant in the field; much as it is against OIE recommendations. • studies to unravel the “myths” about their use are in place with hope to guide reconsideration of the OIE position. Above: Reported CBPP cases (red) 2010-2013; Below left: Cow standing legs apart and extended neck, a sign of CBPP; Below right: A typical encapsulation in the lungs of a CBPP “recovered” animal Methods I: The model Currently, better diagnostic tools are being sought and antibiotic efficacies being assessed. • Study aims • Given the current CBPP research interests, there is need for predictive tools to guide field implementation of the improved control strategies. Pictures • Assumed a gamma-distributed waning of vaccine induced immunity (i.e. method of steps); protection=8months. • A seasonally forced transmission rate: 𝛽 𝑡 = 𝛽0 1 + 𝐴sin 2𝜋𝑡 with 𝛽0 =0.5. • Effects of pulse vaccination or treatment scenarios are explored in isolated herd. • Six year period is simulated in a herd of 500 (S=205, E=10, I=10, R=275) heads. • Treated animals are assumed 50% less infectious. • New recruits are all susceptible to CBPP and for clarity, between herd mixing is ignored in the comparison. Sample graphical results SVEIRQT compartmental model implemented stochastically using Gillespie direct algorithm. incorporates vaccination and treatment. The aim here is to develop mathematical models to assess how effectively antibiotics can be used in the field as supplements to vaccination campaigns. Preliminary results Conclusions and next steps Simulation outcomes for the different interventions Antibiotic treatment can provide the much wanted supplement to the current vaccination campaigns and should be supported. Synchronizing intervention at regional level is paramount due to the cross-boarder animal movements. Cheaper diagnostic tools should be availed to aid CBPP identification and better antibiotics with higher cure rate are needed. Next step: obtain field data to calibrate the models . Intervention scenario Cure rate/ detected Extinction Epidemic fraction/ vaccination chance duration coverage (%) (days) a) Annual pulse vaccination 30% 72 1194 315 110 90% 100 996 222 77 b) Treatment (default detected fraction=80%); different cure rates 1/7 per week 13 1296 526 29 1/2 per week 100 322 18 1 65 937 254 18 77 808 193 8 c) Treatment (default cure 20% rate = 1/4.5 per week): different detected fraction 90% Cumulative number of cases Cumulative number of CBPPinduced deaths Amos Ssematimba a.ssematimba@cgiar.org ● Box 30709 Nairobi Kenya ● +254 20 422 3867 Nairobi Kenya ● ilri.org This project was funded by BBSRC and partly by BMZ This document is licensed for use under a Creative Commons Attribution –Non commercial-Share Alike 3.0 Unported License November 2013