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EXXIM - all you need for cone beam tomography




             Dr. Horst Bruning
   CEO, Animage LLC and Exxim Computing

        Stanford School of Engineering
                  May 4 2009
European – Silicon Valley
        Entrepreneurship
• What can we learn from European
  entrepreneurs (if anything)?
• Personal story
• Exxim and Animage
• What’s European about it?
• What is Silicon Valley specific?
The Personal Story
Background in Germany and Switzerland
Studied Physics at Universities of Erlangen/Nurnberg and
   Freiburg/Germany
The Personal Story -2
PhD work at CERN in Geneva, Switzerland:
Charm quarks, neutral currents, PSI-particles 3.1 GeV/c
Competition with SLAC and MIT/Brookhaven

 Do something of fundamental importance
Personal Story - 3
•   SIEMENS Healthcare in Erlangen Germany
•   CT, Angiography, cross-modality work
•   VP Engineering
•   Head of Basic Research
•   Concept Intrapreneurship
Personal Story - 4
Founding of Exxim Computing Corporation
 in 2002 (Extreme X-ray IMaging)
  – 3 people, 2 products:
    • COBRA software and
    • LIDO active pixel array for detectors
Exxim. Our team
Calculates tomographic slices from a set of 2-D projection
images: Cone Beam Tomography

COBRA supports a wide spectrum of scanner hardware
configurations
Clockwise: transaxial slice, surface
 rendered insect, sagittal cut into
   volume rendered head image
Can be setup on a wide spectrum of computer hardware:
laptops, desktops, desktops with powerful graphics cards (nVidia
         Geforce), and network (Cobra Cluster Solutions)
Based on Feldkamp’s algorithm




                                                 Raw (intensity values)
                                                       projection




Air raw (bright field)
      projection
First step of Feldkamp’s algorithm: converting
          input data to attenuation projections




+


=
Second step of Feldkamp’s algorithm:
   filtering attenuation projections
Third step of Feldkamp’s algorithm:
 backprojecting and accumulation
Incorporates correction
   algorithms making
  output images more
 accurate and visually
       pleasant:

- post-reconstruction
   noise reduction,

    - metal artifact
      reduction,

 - water-level density
    auto-calibration




      Noise reduction
      when different
      factors applied
Iterative metal artifact reduction (MAR)




Important for dental
   applications
water-level density auto-calibration
Useful optional features:

- DICOM output,

 - Arbitrary output volume size (cubes even bigger
than 4096x4096x4096 can be reconstructed),

- Output volume origin offset and volume flips,

- Built-in geometry calibration utility,

- Accepting input projections containing intensity
or logged attenuation values
Cobra performance

                            Dual-core 3 GHz PC
                     nVidia Geforce 285 GTX installed
                         Windows 64-bit platform

Input data            Output Volume    Reconstruction time



512x512               512x512x512      < 20 sec
   512 projections

960x768               640x640x576      60 sec
   600 projections

1024x1024             1024x1024x1024   180 sec
   700 projections
Cobra software architecture
Cobra SDK
                                     Flexible and easy to integrate

char company[]           = "YourCompanyName";
char serialNumber[]      = "YourLicense";

DWORD result = 0;

// ************  Init     ************
result = CobraDispatcher_Init(company, serialNumber);
result = CobraDispatcher_Communicate();
result = CobraDispatcher_SetReconMode(
                 BPMODETAG_CONEBEAM | MODE_OFFLINE);

// ************ Set parameters from file ************
CobraDispatcher_SetParametersByFile(cParFileName);

// ************  Reconstruct      ************
result = CobraDispatcher_TerminateReconstruction();
result = CobraDispatcher_ResetReconstruction();
result = CobraDispatcher_StartReconstruction();
Version 7. New look. Built-in visualization
Version 7.
Scan database. Full DICOM interface
Exxim is dedicated to continuous
improvement of Volume CT software

- Increase performance

- Add functionality

- Mitigate artifacts

- Open for the future
Founding of Animage, LLC in 1/2008
Serves the veterinary radiology market with a
multi-modality x-ray imager

    – Volume CT
    – Digital Radiography
    – Digital Fluoroscopy
Conclusions
• Personal goals
• Deep expertise in at least one field
• Sufficient knowledge of all other fields of
  the corporate world
• Access to venture capital questionable
• A bit of luck

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Horst Bruning Exxim Animage Stanford May409

  • 1. EXXIM - all you need for cone beam tomography Dr. Horst Bruning CEO, Animage LLC and Exxim Computing Stanford School of Engineering May 4 2009
  • 2. European – Silicon Valley Entrepreneurship • What can we learn from European entrepreneurs (if anything)? • Personal story • Exxim and Animage • What’s European about it? • What is Silicon Valley specific?
  • 3. The Personal Story Background in Germany and Switzerland Studied Physics at Universities of Erlangen/Nurnberg and Freiburg/Germany
  • 4. The Personal Story -2 PhD work at CERN in Geneva, Switzerland: Charm quarks, neutral currents, PSI-particles 3.1 GeV/c Competition with SLAC and MIT/Brookhaven  Do something of fundamental importance
  • 5. Personal Story - 3 • SIEMENS Healthcare in Erlangen Germany • CT, Angiography, cross-modality work • VP Engineering • Head of Basic Research • Concept Intrapreneurship
  • 6. Personal Story - 4 Founding of Exxim Computing Corporation in 2002 (Extreme X-ray IMaging) – 3 people, 2 products: • COBRA software and • LIDO active pixel array for detectors
  • 8. Calculates tomographic slices from a set of 2-D projection images: Cone Beam Tomography COBRA supports a wide spectrum of scanner hardware configurations
  • 9. Clockwise: transaxial slice, surface rendered insect, sagittal cut into volume rendered head image
  • 10. Can be setup on a wide spectrum of computer hardware: laptops, desktops, desktops with powerful graphics cards (nVidia Geforce), and network (Cobra Cluster Solutions)
  • 11. Based on Feldkamp’s algorithm Raw (intensity values) projection Air raw (bright field) projection
  • 12. First step of Feldkamp’s algorithm: converting input data to attenuation projections + =
  • 13. Second step of Feldkamp’s algorithm: filtering attenuation projections
  • 14. Third step of Feldkamp’s algorithm: backprojecting and accumulation
  • 15. Incorporates correction algorithms making output images more accurate and visually pleasant: - post-reconstruction noise reduction, - metal artifact reduction, - water-level density auto-calibration Noise reduction when different factors applied
  • 16. Iterative metal artifact reduction (MAR) Important for dental applications
  • 18. Useful optional features: - DICOM output, - Arbitrary output volume size (cubes even bigger than 4096x4096x4096 can be reconstructed), - Output volume origin offset and volume flips, - Built-in geometry calibration utility, - Accepting input projections containing intensity or logged attenuation values
  • 19. Cobra performance Dual-core 3 GHz PC nVidia Geforce 285 GTX installed Windows 64-bit platform Input data Output Volume Reconstruction time 512x512 512x512x512 < 20 sec 512 projections 960x768 640x640x576 60 sec 600 projections 1024x1024 1024x1024x1024 180 sec 700 projections
  • 21. Cobra SDK Flexible and easy to integrate char company[] = "YourCompanyName"; char serialNumber[] = "YourLicense"; DWORD result = 0; // ************ Init ************ result = CobraDispatcher_Init(company, serialNumber); result = CobraDispatcher_Communicate(); result = CobraDispatcher_SetReconMode( BPMODETAG_CONEBEAM | MODE_OFFLINE); // ************ Set parameters from file ************ CobraDispatcher_SetParametersByFile(cParFileName); // ************ Reconstruct ************ result = CobraDispatcher_TerminateReconstruction(); result = CobraDispatcher_ResetReconstruction(); result = CobraDispatcher_StartReconstruction();
  • 22. Version 7. New look. Built-in visualization
  • 23. Version 7. Scan database. Full DICOM interface
  • 24. Exxim is dedicated to continuous improvement of Volume CT software - Increase performance - Add functionality - Mitigate artifacts - Open for the future
  • 25. Founding of Animage, LLC in 1/2008 Serves the veterinary radiology market with a multi-modality x-ray imager – Volume CT – Digital Radiography – Digital Fluoroscopy
  • 26.
  • 27. Conclusions • Personal goals • Deep expertise in at least one field • Sufficient knowledge of all other fields of the corporate world • Access to venture capital questionable • A bit of luck