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FAIR Data in the Scholarly
Communications Lifecycle
Chris Erdmann
Engagement, Support, Training Expert
RENCI | NHLBI BioData Catalyst | GO FAIR US
@libcce | erdmannc@renci.org
Data infused research lifecycle… and software!
Diagram: Bournemouth University UK
Data
Data
Data
How to support FAIR?
FAIR is a shared responsibility
FAIR needs an ecosystem of services
FAIR needs people
Open (research) needs FAIR
What is motivating you to learn more about FAIR?
For this session, we will be using a collaborative
Etherpad to collect responses:
https://pad.carpentries.org/FAIRlifecycle
Please take a minute to bring up the Etherpad in your browser.
Note: When responding to questions in the Etherpad, if someone has a similar
response, you can add a “+” to it. Also, add your first names to the responses, just
in case we might want to follow up on the call to discuss further or for clarification.
FAIR Motivations
- Research Practices / Culture
- Research Impact
- Institutional Policies / Support
- Infrastructure / Publishing
- Funders
- Legal
- Just Interested
Outline
- Background
- FAIR principles in more depth
- Understanding what FAIR means in your context (assessment)
- FAIR examples
- Types of output (research software)
- Communities to follow
- Q&A
Origins of FAIR
2014 Leiden, Lorentz Center Workshop
● Not to be Prescriptive
● Community Driven
● Avoid the Standards Path
● Avoid Narrative w/ Trapped Data
● Machine Actionable
● Guiding Principles
15 FAIR Principles
● Humans and machines as digesters of data
● FAIR Principles apply to both metadata and data
● As Open as possible, as closed as necessary
● The Principles are not rules or standards
● Documentation, file formats, RDM training...
● FAIR from the disciplines
How are you responding to the principles?
Briefly describe how you are responding (or would respond) to the subset of
principles (below) in the Etherpad:
https://pad.carpentries.org/FAIRlifecycle
- F1: (Meta) data are assigned globally unique and persistent identifiers
- R1.3: (Meta)data meet domain-relevant community standards
You can also find these listed in the Etherpad...
F1: (Meta) data are assigned globally unique and
persistent identifiers
What’s the problem?
What does a persistent identifier (PID) look like?
Example: a DataCite Digital Object Identifier (DOI)
There are many PIDs and PID providers to choose from
PEARC '20: Practice and Experience in Advanced Research Computing July 2020
Pages 99–105 https://doi.org/10.1145/3311790.3396660
Pidforum.org - for the harder PID questions
Jisc PID Agency Project
The Tickell report recommended that Jisc lead sector
agreement and adoption of a basket of ‘unique
identifiers’
https://assets.publishing.service.gov.uk/government/up
loads/system/uploads/attachment_data/file/774956/Op
en-access-to-research-publications-2018.pdf
The proposed UK PID consortium would
both help enable the UK’s ‘open research
infrastructure’ and also support the use of
open PID infrastructures as needed by the
community.
Developing a persistent identifier roadmap
for open access to UK research.
http://repository.jisc.ac.uk/7840/
Five priority PIDs
R1.3: (Meta)data meet domain-relevant community
standards
What is metadata?
Standardised
Structured
Machine and human readable
https://www.wikidata.org/wiki/Q180160
Source: https://flickr.com/photos/33255628@N00/8071729256
Domain specific standards for description
RDA Metadata Standards Directory https://rd-alliance.github.io/metadata-
directory/standards/
FAIRsharing https://fairsharing.org/standards/
Project policies for (meta)data
Multidisciplinary drifting Observatory for the Study of the Arctic Climate (MOSAiC)
data policy
Metadata shall make data findable and provide additional contextual information about measurement details,
methods, relevance, lineage, quality, usage and access restrictions of the data. It shall allow coupling users,
software, and computing resources to the data. Hence, metadata must be machine-readable and interpretable as
well as human-understandable. Furthermore, metadata for each data set should follow the FAIR data principles in
terms of fitness for purpose and fitness for re-use. The metadata should be agreed on, listed, and explained within
the MSOPs.
Includes recommendations for metadata and vocabularies, listing examples for oceanography, climatology, and modelling;
biology; provenance.
Sources: https://mosaic-expedition.org/science/mosaic-data/; https://spaces.awi.de/display/EFPW/MOSAiC+Data+Policy
Direct link to data policy (pdf)
Metadata Standards / Templates / Communities
Play with metadata in a sandbox
Zenodo Sandbox: https://sandbox.zenodo.org/
Understanding what FAIR means in your context
More on Assessment
FAIR Zenodo Principles
https://about.zenodo.org/principles/
Repository Checklist
● General / discipline / object
● Suits user needs
● Persistent and unique identifier
● Landing page / metadata to find, cite
● Access, download usage metrics
● Availability in the long term
● Responsive to community
● Certificates / standards
● Clear terms, conditions, licensing
See OpenAire’s Guides for Researchers:
How to select a repository?
FAIR Checklists
http://www.copdess.org/enabling-fair-data-
project%E2%80%BA/enabling-fair-data-faqs/
FAQs / Guidelines
Core Trust Seal
TRUSTworthy Digital Repositories
“...to make data FAIR whilst preserving
them over time requires trustworthy
digital repositories (TDRs) with
sustainable governance and
organizational frameworks, reliable
infrastructure, and comprehensive
policies supporting community-
agreed practices”
Principle Guidance for Repositories
Transparency To be transparent about specific repository services and data
holdings that are verifiable by publicly accessible evidence.
Responsibility To be responsible for ensuring the authenticity and integrity of data
holdings and for the reliability and persistence of its service.
User Focus To ensure that the data management norms and expectations of
target user communities are met.
Sustainability To sustain services and preserve data holdings for the long-term.
Technology To provide infrastructure and capabilities to support secure,
persistent, and reliable services.
Lin, D., Crabtree, J., Dillo, I. et al. The TRUST Principles for digital repositories. Sci Data 7, 144 (2020).
https://doi.org/10.1038/s41597-020-0486-7
How would you rate the awareness of the FAIR
principles within your institution?
FAIR in European Higher Education (FAIRsFAIR) https://doi.org/10.5281/zenodo.3629682
#FAIRexamples
Additional Examples of FAIR in Disciplines
Who is the FAIRest one of all?
Mirror, Mirror on the Wall: TKFDM announces
“FAIRest Dataset” Award
Kiesel, Johannes, Potthast, Martin, Hagen, Matthias,
Kneist, Florian, & Stein, Benno. (2017). Webis-Web-
Archive-17 (Version 1.0.0) [Data set]. Zenodo.
http://doi.org/10.5281/zenodo.1002204
Rath, Michael, Mäder, Patrick. (2019). The SEOSS
Dataset - Requirements, Bug Reports, Code History,
and Trace Links for Entire Projects. Harvard
Dataverse, V1. https://doi.org/10.7910/DVN/PDDZ4Q
Turning FAIR into reality
Lowndes, J., Best, B.,
Scarborough, C. et al. Our path
to better science in less time
using open data science tools.
Nat Ecol Evol 1, 0160 (2017).
https://doi.org/10.1038/s41559-
017-0160
Software and data skills training
https://carpentries.org/
Share your #FAIRexamples in the Etherpad
https://pad.carpentries.org/FAIRlifecycle
Types of
Research Output…
Research
Software.
Software Heritage Library
Software DOI, now what?
Related identifiers
Software Quality Checklists/Management Plans
● CLARIAH (Pages 38-42)
● SSI
● EURISE
● Deutsches Zentrum für Luft- und
Raumfahrt (Class 1)
● ELIXIR (SMP)
Top 10 FAIR Data & Software Things & Recommendations
Netherlands eScience Center : Research Software Directory
Papers with Code
Global Initiatives: Who is doing what and how to get
involved
https://conference.codata.org/FAIRconvergence2020/
https://gofair.us/
Asking others,
turning to your
colleagues
FAIR Data in the Scholarly Communications Lifecycle
Natasha Simons, Chris Erdmann, Daniel Bangert, & Fiona Murphy. (2020,
August). FAIR Data in the Scholarly Communications Lifecycle. Presented at the
FORCE11 Scholarly Communications Institute (FSCI), Online: Zenodo.
http://doi.org/10.5281/zenodo.3987052
Q&A Discussion
Thank you!

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dkNET Webinar: FAIR Data & Software in the Research Life Cycle 01/22/2021

  • 1. FAIR Data in the Scholarly Communications Lifecycle Chris Erdmann Engagement, Support, Training Expert RENCI | NHLBI BioData Catalyst | GO FAIR US @libcce | erdmannc@renci.org
  • 2. Data infused research lifecycle… and software! Diagram: Bournemouth University UK Data Data Data
  • 3. How to support FAIR? FAIR is a shared responsibility FAIR needs an ecosystem of services FAIR needs people Open (research) needs FAIR
  • 4. What is motivating you to learn more about FAIR?
  • 5. For this session, we will be using a collaborative Etherpad to collect responses: https://pad.carpentries.org/FAIRlifecycle Please take a minute to bring up the Etherpad in your browser. Note: When responding to questions in the Etherpad, if someone has a similar response, you can add a “+” to it. Also, add your first names to the responses, just in case we might want to follow up on the call to discuss further or for clarification.
  • 6. FAIR Motivations - Research Practices / Culture - Research Impact - Institutional Policies / Support - Infrastructure / Publishing - Funders - Legal - Just Interested
  • 7. Outline - Background - FAIR principles in more depth - Understanding what FAIR means in your context (assessment) - FAIR examples - Types of output (research software) - Communities to follow - Q&A
  • 8. Origins of FAIR 2014 Leiden, Lorentz Center Workshop ● Not to be Prescriptive ● Community Driven ● Avoid the Standards Path ● Avoid Narrative w/ Trapped Data ● Machine Actionable ● Guiding Principles
  • 9.
  • 11.
  • 12. ● Humans and machines as digesters of data ● FAIR Principles apply to both metadata and data ● As Open as possible, as closed as necessary ● The Principles are not rules or standards ● Documentation, file formats, RDM training... ● FAIR from the disciplines
  • 13. How are you responding to the principles? Briefly describe how you are responding (or would respond) to the subset of principles (below) in the Etherpad: https://pad.carpentries.org/FAIRlifecycle - F1: (Meta) data are assigned globally unique and persistent identifiers - R1.3: (Meta)data meet domain-relevant community standards You can also find these listed in the Etherpad...
  • 14. F1: (Meta) data are assigned globally unique and persistent identifiers
  • 16. What does a persistent identifier (PID) look like? Example: a DataCite Digital Object Identifier (DOI)
  • 17. There are many PIDs and PID providers to choose from
  • 18. PEARC '20: Practice and Experience in Advanced Research Computing July 2020 Pages 99–105 https://doi.org/10.1145/3311790.3396660
  • 19. Pidforum.org - for the harder PID questions
  • 20. Jisc PID Agency Project The Tickell report recommended that Jisc lead sector agreement and adoption of a basket of ‘unique identifiers’ https://assets.publishing.service.gov.uk/government/up loads/system/uploads/attachment_data/file/774956/Op en-access-to-research-publications-2018.pdf The proposed UK PID consortium would both help enable the UK’s ‘open research infrastructure’ and also support the use of open PID infrastructures as needed by the community. Developing a persistent identifier roadmap for open access to UK research. http://repository.jisc.ac.uk/7840/
  • 22. R1.3: (Meta)data meet domain-relevant community standards
  • 23. What is metadata? Standardised Structured Machine and human readable https://www.wikidata.org/wiki/Q180160 Source: https://flickr.com/photos/33255628@N00/8071729256
  • 24. Domain specific standards for description RDA Metadata Standards Directory https://rd-alliance.github.io/metadata- directory/standards/ FAIRsharing https://fairsharing.org/standards/
  • 25. Project policies for (meta)data Multidisciplinary drifting Observatory for the Study of the Arctic Climate (MOSAiC) data policy Metadata shall make data findable and provide additional contextual information about measurement details, methods, relevance, lineage, quality, usage and access restrictions of the data. It shall allow coupling users, software, and computing resources to the data. Hence, metadata must be machine-readable and interpretable as well as human-understandable. Furthermore, metadata for each data set should follow the FAIR data principles in terms of fitness for purpose and fitness for re-use. The metadata should be agreed on, listed, and explained within the MSOPs. Includes recommendations for metadata and vocabularies, listing examples for oceanography, climatology, and modelling; biology; provenance. Sources: https://mosaic-expedition.org/science/mosaic-data/; https://spaces.awi.de/display/EFPW/MOSAiC+Data+Policy Direct link to data policy (pdf)
  • 26. Metadata Standards / Templates / Communities
  • 27. Play with metadata in a sandbox Zenodo Sandbox: https://sandbox.zenodo.org/
  • 28. Understanding what FAIR means in your context
  • 29.
  • 32. Repository Checklist ● General / discipline / object ● Suits user needs ● Persistent and unique identifier ● Landing page / metadata to find, cite ● Access, download usage metrics ● Availability in the long term ● Responsive to community ● Certificates / standards ● Clear terms, conditions, licensing See OpenAire’s Guides for Researchers: How to select a repository?
  • 36. TRUSTworthy Digital Repositories “...to make data FAIR whilst preserving them over time requires trustworthy digital repositories (TDRs) with sustainable governance and organizational frameworks, reliable infrastructure, and comprehensive policies supporting community- agreed practices” Principle Guidance for Repositories Transparency To be transparent about specific repository services and data holdings that are verifiable by publicly accessible evidence. Responsibility To be responsible for ensuring the authenticity and integrity of data holdings and for the reliability and persistence of its service. User Focus To ensure that the data management norms and expectations of target user communities are met. Sustainability To sustain services and preserve data holdings for the long-term. Technology To provide infrastructure and capabilities to support secure, persistent, and reliable services. Lin, D., Crabtree, J., Dillo, I. et al. The TRUST Principles for digital repositories. Sci Data 7, 144 (2020). https://doi.org/10.1038/s41597-020-0486-7
  • 37. How would you rate the awareness of the FAIR principles within your institution? FAIR in European Higher Education (FAIRsFAIR) https://doi.org/10.5281/zenodo.3629682
  • 39. Additional Examples of FAIR in Disciplines
  • 40. Who is the FAIRest one of all? Mirror, Mirror on the Wall: TKFDM announces “FAIRest Dataset” Award Kiesel, Johannes, Potthast, Martin, Hagen, Matthias, Kneist, Florian, & Stein, Benno. (2017). Webis-Web- Archive-17 (Version 1.0.0) [Data set]. Zenodo. http://doi.org/10.5281/zenodo.1002204 Rath, Michael, Mäder, Patrick. (2019). The SEOSS Dataset - Requirements, Bug Reports, Code History, and Trace Links for Entire Projects. Harvard Dataverse, V1. https://doi.org/10.7910/DVN/PDDZ4Q
  • 41. Turning FAIR into reality Lowndes, J., Best, B., Scarborough, C. et al. Our path to better science in less time using open data science tools. Nat Ecol Evol 1, 0160 (2017). https://doi.org/10.1038/s41559- 017-0160
  • 42. Software and data skills training https://carpentries.org/
  • 43. Share your #FAIRexamples in the Etherpad https://pad.carpentries.org/FAIRlifecycle
  • 45.
  • 47. Software DOI, now what? Related identifiers
  • 48.
  • 49. Software Quality Checklists/Management Plans ● CLARIAH (Pages 38-42) ● SSI ● EURISE ● Deutsches Zentrum für Luft- und Raumfahrt (Class 1) ● ELIXIR (SMP)
  • 50. Top 10 FAIR Data & Software Things & Recommendations
  • 51.
  • 52. Netherlands eScience Center : Research Software Directory
  • 54. Global Initiatives: Who is doing what and how to get involved
  • 57. Asking others, turning to your colleagues
  • 58. FAIR Data in the Scholarly Communications Lifecycle Natasha Simons, Chris Erdmann, Daniel Bangert, & Fiona Murphy. (2020, August). FAIR Data in the Scholarly Communications Lifecycle. Presented at the FORCE11 Scholarly Communications Institute (FSCI), Online: Zenodo. http://doi.org/10.5281/zenodo.3987052