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Turbulence: a computational
overview & CO2 transfer
Fabio Fonseca
Overview
   Turbulent flow
    ◦ Randomicity vs. Chaos
    ◦ The Navier-Stokes equation
   Computational overview
    ◦ Discretizing and solving the fluid mechanics
      equations
    ◦ Sample applications
    ◦ Understanding the computational problem
   CO2 transfer at the equatorial Atlantic ocean
    ◦ CO2 on the oceans
    ◦ Turbulent transfer
    ◦ Heat and momentum transfer
Turbulent vs. smooth flow




 Turbulent flow

                  Smooth flow
Turbulence




“Turbulence is composed of
eddies: patches of
zigzagging, often swirling
fluid, moving randomly around the
overall direction of motion.”    source: SCIAM




               Source: McDonnough 2004, 2007
Why study turbulence?
   What if we could...
    ◦ Predict the weather?
    ◦ Simulate the human heart?
    ◦ Simulate the galaxies flow through the
      space?
    ◦ Create air and sea transportation relying
      only on computer simulations (i.e., not
      relying on air tunnels)?
Turbulence: The problem

“The most important unsolved problem of classical physics.”
                               Richard Feynman




               “I am an old man now, and when I die and go to heaven
               there are two matters on which I hope for enlightenment.
               One is quantum electrodynamics, and the other is the
               turbulent motion of fluids. And about the former I am rather
               optimistic.”
                                                    Sir Horace Lamb
               (1932)
Turbulence: The problem (as of
today)




source: http//www.claymath.org/millennium
A brief history of turbulence




              “Observe the motion of the surface of the
              water, which resembles that of hair, which has
              two motions, of which one is caused by the
              weight of the hair, the other by the direction of
              the curls; thus the water has eddying
              motions, one part of which is due to the
              principal current, the other to the random and
              reverse motion.”
                          - Leonardo da Vinci, circa 1500
A brief history of turbulence
   The Navier-Stokes equation (Early
    19th century):




     • Believed to embody the physics of all fluid flows
     (turbulent or otherwise)
     •Accounts for:
          The rate of change of momentum at each
          point in a viscous fluid, u is the fluid velocity
          field; pressure variations, P is the pressure
A brief history of turbulence




   This equation cannot be analytically
    “solved”:
    ◦ “Two realizations of the flow with
      infinitesimally different initial conditions
      may be complete unrelated to each other”
      – Ecke (2005)
A brief history of turbulence
   Late 19th century:
    ◦ In 1987 Boussinesq hypothesis tell us that
      the turbulent motions are proportional to
      strains in the flow.
    ◦ In 1894 Reynolds states that turbulence is
      far too complicated to permit a detailed
      understanding and simplifies the problem
      using an statistical approach,
      decomposing the flow in its mean and
      fluctuating parts.
A brief history of turbulence
   1960‟s, the onset of the digital
    computer:
    ◦ MIT‟s E. Lorenz presented a numerical
      solution to the Navier-Stokes equation
   Lorenz‟s model could:
    ◦ be sensible to variations to the initial
      conditions
    ◦ offer „turbulence like‟ structures
    ◦ be non-repeatable or chaotic
    ◦ offer a deterministic solution to the N-S
      equations
Interval: randomicty vs. chaos
   Lorenz‟s solutions were chaotic
A brief history of turbulence
   Today:
    ◦ The statistical approach to the turbulence
      has become the standard
    ◦ Experimental studies advanced and
      helped to define and pinpoint the physical
      structures of the turbulent flow
    ◦ Mathematical advances on the solution of
      the N-S equation
    ◦ Boom of computational techniques born in
      the 70‟s and 80‟s
Computational overview
   What are computers really doing?




                               Simulated fire-plume
Computational overview
   They‟re solving the N-S equation
    ◦ At least a specialized, statistically based,
      version of them
    ◦ Using simple geometry
    ◦ Using simplified and/or parameterized
      physical effects such as chemistry,
      radiation and others
Estimating the N-S equation
   The N-S equation is a partial
    differential equation:
    ◦ Discretize the partial differential equation
      by choosing a numerical method
    ◦ Obtain initial conditions for each variable
      at every spatial coordinate (and boundary
      conditions for the simulation)
    ◦ Choose an adequate time/space grid
    ◦ Improve it to be feasible to solve at an
      adequate time (or have a supercomputer
      and then wait)
Estimating the N-S equation
   Partial differential equation
Estimating the N-S equation
   A (very) simple discretization of a
    partial differential equation




                             Classical explicit method
Estimating the N-S equation
   Initial condition



   Boundary condition
Estimating the N-S equation
                Visualizing the conditions                 Boundary values
                                                          given to the problem
                                                              beforehand




This shape was given
to the problem as a
initial
condition




                           Numerical solution to the wave equation – Fonseca (20
Estimating the N-S equation
   The computational grid




            Adaptative grid following a shock solution – Fonseca (20
2 sample applications
   Aircraft engineering
2 sample applications
   Aircraft engineering




    Initial conditions: wind velocity & atmospheric disturbances
    Boundary conditions: the precise airplane shape
    Grid: The mesh over the airplane
    Numerical Model: Dependent on the physical properties you want
    to simulate: drag, lift, momentum, heat diffusion, etc.
2 sample applications
   Air pollution
2 sample applications
   Air pollution




                                                     Source: http://www.me.jhu.edu/eddy-simulation.htm

    Initial conditions: Wind velocity, pressure distribution, pollutant
    source
    Boundary conditions: The cityscape
    Grid: The mesh over the cityscape
    Numerical Model: N coupled types:
    particle, turbulence, chemistry, etc
Computer simulations: the nitty-
gritty
   What kind of computer can solve the
    turbulent flow?

                            ANY

      One dimensional,
      parameterized



    Hundred points can            Can be intractable even in
    be solved in 20s in a         today‟s supercomputer;
    Intel‟s CORE 2 quad           e.g., DNS
Computer simulations: the nitty-
      gritty
           Simulations done by the IAG-USP
            micrometeorology laboratory
             ◦ ~ 2003: 3D, serial LES. 8 nodes. 5 days
               to simulate 1 h using a CRAY
               supercomputer
             ◦ ~ 2008: 3D, parallelized LES. 8 nodes. 4
               days to simulate 10 h using an Intel
               cluster
             ◦ ~ 2009: 3D, parallelized LES. 8 nodes.
               1.5 day to simulate 12 h using an Intel
               cluster
             ◦ ~ 2011: 3D, parallelized LES. 1024 nodes.
Sources: Codato (2008), Marques Filho, (2004); Oliveira et al., (2002); Barbaro (2010)

               8 hours to simulate an hour* using an IBM
* Personal letter to Barbaro, 2011, SARA: http://www.sara.nl/systems/huygens. The LES model used computed several different physical
effects, from cloud microphysics to chemistry. In short, a much more complex and superior model than the ones listed before
Computer simulations: the nitty-
gritty
   Why does it take so long to compute?
    ◦ Each point in the computation grid
      depends on the calculated values of its
      neighbors and itself …
    ◦ … and values for the same points
      obtained at previous iteration steps
    ◦ Roughly speaking, the more physical
      properties you retain, the more
      “communication” between points and
      physical parameterizations you have.
Computer simulations: the nitty-
gritty
   Computational grid




Discretization for velocities and viscous stresses around a cell cut by an interface, extracted from
Tryggvason G., Scardovelli R. and Zaleski S., Direct Numerical Simulations of Gas-Liquid Multiphase
Flows, Cambrigge University Press, to appear (February 2011) .
                                                                Source: http://www.lmm.jussieu.fr/~zaleski/drops2.html
Computer simulations: the nitty-
gritty
   In a nutshell
    ◦ The maths that allow the N-S equations to
      be discretized at all are crude
      representations of the complete flow.
    ◦ The more physical effects you retain in
      the problem, greater is the effort to
      compute it.
    ◦ The more realistic the geometry of the
      problem, the more intensive is the use of
      computer resources.
Turbulent CO2 transfer on the
equatorial Atlantic ocean
   Objectives
    ◦ Investigate the CO2 transfer on the
      equatorial Atlantic Ocean
      Gather CO2 and other meteorological data
      Estimate the heat fluxes
      Estimate the CO2 flux
    ◦ Provide a methodology for further studies
    ◦ Couple the CO2 transfer algorithm to a 1D
      turbulence model
Turbulent CO2 transfer on the
    equatorial Atlantic ocean
        CO2 over the oceans




                                                 Atmospheric CO2 concentration at Ascension Island (8°S, 14°W)

                                                                           Fonseca (2011)




Atmospheric CO2 concentration over the oceans Source: NOAA
Turbulent CO2 transfer on the
equatorial Atlantic ocean
   CO2 transfer on the oceans
Turbulent CO2 transfer on the
equatorial Atlantic ocean
   What is flux?             Flux is the amount of “something”
                              passing through a surface
                                          http://betterexplained.com/articles/flu
                              x/




                                   Source: http://isites.harvard.edu/icb/icb.do?keyword=k41471&pageid=icb.page194990




          Source: wikipedia
Turbulent CO2 transfer on the
equatorial Atlantic ocean
   Why the heat flux?



                                                                The latent and
                                                                sensible heat
                                                                fluxes are
                                                                estimated by the
                                                                algorithm and can
                                                                be used as initial
                                                                and boundary
                                                                condition to a
                                                                turbulence model.
Solar radiation powers the Earth system
Source: http://www.answers.com/topic/planetary-boundary-layer
Turbulent CO2 transfer on the
     equatorial Atlantic ocean
           Why the heat flux?


                                                           Values of the
                                                           flux of Latent
                                                           and sensible
                                                           heat and the
                                                           shortwave and
                                                           longwave
                                                           radiation are
                                                           used by the
                                                           algorithm to
                                                           estimate the
                                                           CO2 transfer

Source: NASA; The Earth Observer November-December, 2006
Turbulent CO2 transfer on the
equatorial Atlantic ocean
   Wind speed & momentum flux


                             Transfer of wind
                             momentum to
                             the ocean
                             drives the CO2
                             transfer on the
                             equatorial
                             Atlantic ocean.
Turbulent CO2 transfer on the
equatorial Atlantic ocean
   The CO2 fluxes can be obtained from the
    heat and momentum fluxes




   The equatorial Atlantic ocean act as a
    CO2 source to the atmosphere
Turbulent CO2 transfer on the
equatorial Atlantic ocean
   Implications:

    ◦ The CO2 transfer algorithm can now be
      coupled to ocean/atmosphere turbulence
      models

      It can act as an upper boundary
       condition, forcing the water column/atmosphere

      That, in turn, can force the algorithm, resulting
       in physically sound estimations of the upper
       layers of the ocean and the atmosphere.
Summary
   Turbulent vs. Smooth flow
       History and theory development
       Randomicity vs. chaos
   The N-S equations
    ◦ Describe all flow state, turbulent or
      otherwise
    ◦ Described by a non-linear partial
      differential equation
    ◦ Discretized by numerical methods
Summary
   Numerical methods
    ◦ Initial and boundary conditions
    ◦ The numerical grid
   Sample applications
    ◦ Aircraft engineering
    ◦ Air pollution
   Computer simulations: The nitty-gritty
    ◦ Dependent on the numerical model and
      the parameterized physical processes
    ◦ Dependent on the geometry
Summary
   Turbulent CO2 transfer
    ◦ CO2 over the oceans
    ◦ Flux
      Heat & Momentum
    ◦ CO2 over the equatorial Atlantic ocean
      Gas flux
      Turbulent mixing
    ◦ Coupling of the algorithm to a turbulence
      model
Obrigado!
 Fabio Fonseca

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Turbulence - computational overview and CO2 transfer

  • 1. Turbulence: a computational overview & CO2 transfer Fabio Fonseca
  • 2. Overview  Turbulent flow ◦ Randomicity vs. Chaos ◦ The Navier-Stokes equation  Computational overview ◦ Discretizing and solving the fluid mechanics equations ◦ Sample applications ◦ Understanding the computational problem  CO2 transfer at the equatorial Atlantic ocean ◦ CO2 on the oceans ◦ Turbulent transfer ◦ Heat and momentum transfer
  • 3. Turbulent vs. smooth flow Turbulent flow Smooth flow
  • 4. Turbulence “Turbulence is composed of eddies: patches of zigzagging, often swirling fluid, moving randomly around the overall direction of motion.” source: SCIAM Source: McDonnough 2004, 2007
  • 5. Why study turbulence?  What if we could... ◦ Predict the weather? ◦ Simulate the human heart? ◦ Simulate the galaxies flow through the space? ◦ Create air and sea transportation relying only on computer simulations (i.e., not relying on air tunnels)?
  • 6. Turbulence: The problem “The most important unsolved problem of classical physics.” Richard Feynman “I am an old man now, and when I die and go to heaven there are two matters on which I hope for enlightenment. One is quantum electrodynamics, and the other is the turbulent motion of fluids. And about the former I am rather optimistic.” Sir Horace Lamb (1932)
  • 7. Turbulence: The problem (as of today) source: http//www.claymath.org/millennium
  • 8. A brief history of turbulence “Observe the motion of the surface of the water, which resembles that of hair, which has two motions, of which one is caused by the weight of the hair, the other by the direction of the curls; thus the water has eddying motions, one part of which is due to the principal current, the other to the random and reverse motion.” - Leonardo da Vinci, circa 1500
  • 9. A brief history of turbulence  The Navier-Stokes equation (Early 19th century): • Believed to embody the physics of all fluid flows (turbulent or otherwise) •Accounts for: The rate of change of momentum at each point in a viscous fluid, u is the fluid velocity field; pressure variations, P is the pressure
  • 10. A brief history of turbulence  This equation cannot be analytically “solved”: ◦ “Two realizations of the flow with infinitesimally different initial conditions may be complete unrelated to each other” – Ecke (2005)
  • 11. A brief history of turbulence  Late 19th century: ◦ In 1987 Boussinesq hypothesis tell us that the turbulent motions are proportional to strains in the flow. ◦ In 1894 Reynolds states that turbulence is far too complicated to permit a detailed understanding and simplifies the problem using an statistical approach, decomposing the flow in its mean and fluctuating parts.
  • 12. A brief history of turbulence  1960‟s, the onset of the digital computer: ◦ MIT‟s E. Lorenz presented a numerical solution to the Navier-Stokes equation  Lorenz‟s model could: ◦ be sensible to variations to the initial conditions ◦ offer „turbulence like‟ structures ◦ be non-repeatable or chaotic ◦ offer a deterministic solution to the N-S equations
  • 13. Interval: randomicty vs. chaos  Lorenz‟s solutions were chaotic
  • 14. A brief history of turbulence  Today: ◦ The statistical approach to the turbulence has become the standard ◦ Experimental studies advanced and helped to define and pinpoint the physical structures of the turbulent flow ◦ Mathematical advances on the solution of the N-S equation ◦ Boom of computational techniques born in the 70‟s and 80‟s
  • 15. Computational overview  What are computers really doing? Simulated fire-plume
  • 16. Computational overview  They‟re solving the N-S equation ◦ At least a specialized, statistically based, version of them ◦ Using simple geometry ◦ Using simplified and/or parameterized physical effects such as chemistry, radiation and others
  • 17. Estimating the N-S equation  The N-S equation is a partial differential equation: ◦ Discretize the partial differential equation by choosing a numerical method ◦ Obtain initial conditions for each variable at every spatial coordinate (and boundary conditions for the simulation) ◦ Choose an adequate time/space grid ◦ Improve it to be feasible to solve at an adequate time (or have a supercomputer and then wait)
  • 18. Estimating the N-S equation  Partial differential equation
  • 19. Estimating the N-S equation  A (very) simple discretization of a partial differential equation Classical explicit method
  • 20. Estimating the N-S equation  Initial condition  Boundary condition
  • 21. Estimating the N-S equation  Visualizing the conditions Boundary values given to the problem beforehand This shape was given to the problem as a initial condition Numerical solution to the wave equation – Fonseca (20
  • 22. Estimating the N-S equation  The computational grid Adaptative grid following a shock solution – Fonseca (20
  • 23. 2 sample applications  Aircraft engineering
  • 24. 2 sample applications  Aircraft engineering Initial conditions: wind velocity & atmospheric disturbances Boundary conditions: the precise airplane shape Grid: The mesh over the airplane Numerical Model: Dependent on the physical properties you want to simulate: drag, lift, momentum, heat diffusion, etc.
  • 25. 2 sample applications  Air pollution
  • 26. 2 sample applications  Air pollution Source: http://www.me.jhu.edu/eddy-simulation.htm Initial conditions: Wind velocity, pressure distribution, pollutant source Boundary conditions: The cityscape Grid: The mesh over the cityscape Numerical Model: N coupled types: particle, turbulence, chemistry, etc
  • 27. Computer simulations: the nitty- gritty  What kind of computer can solve the turbulent flow? ANY One dimensional, parameterized Hundred points can Can be intractable even in be solved in 20s in a today‟s supercomputer; Intel‟s CORE 2 quad e.g., DNS
  • 28. Computer simulations: the nitty- gritty  Simulations done by the IAG-USP micrometeorology laboratory ◦ ~ 2003: 3D, serial LES. 8 nodes. 5 days to simulate 1 h using a CRAY supercomputer ◦ ~ 2008: 3D, parallelized LES. 8 nodes. 4 days to simulate 10 h using an Intel cluster ◦ ~ 2009: 3D, parallelized LES. 8 nodes. 1.5 day to simulate 12 h using an Intel cluster ◦ ~ 2011: 3D, parallelized LES. 1024 nodes. Sources: Codato (2008), Marques Filho, (2004); Oliveira et al., (2002); Barbaro (2010) 8 hours to simulate an hour* using an IBM * Personal letter to Barbaro, 2011, SARA: http://www.sara.nl/systems/huygens. The LES model used computed several different physical effects, from cloud microphysics to chemistry. In short, a much more complex and superior model than the ones listed before
  • 29. Computer simulations: the nitty- gritty  Why does it take so long to compute? ◦ Each point in the computation grid depends on the calculated values of its neighbors and itself … ◦ … and values for the same points obtained at previous iteration steps ◦ Roughly speaking, the more physical properties you retain, the more “communication” between points and physical parameterizations you have.
  • 30. Computer simulations: the nitty- gritty  Computational grid Discretization for velocities and viscous stresses around a cell cut by an interface, extracted from Tryggvason G., Scardovelli R. and Zaleski S., Direct Numerical Simulations of Gas-Liquid Multiphase Flows, Cambrigge University Press, to appear (February 2011) . Source: http://www.lmm.jussieu.fr/~zaleski/drops2.html
  • 31. Computer simulations: the nitty- gritty  In a nutshell ◦ The maths that allow the N-S equations to be discretized at all are crude representations of the complete flow. ◦ The more physical effects you retain in the problem, greater is the effort to compute it. ◦ The more realistic the geometry of the problem, the more intensive is the use of computer resources.
  • 32. Turbulent CO2 transfer on the equatorial Atlantic ocean  Objectives ◦ Investigate the CO2 transfer on the equatorial Atlantic Ocean  Gather CO2 and other meteorological data  Estimate the heat fluxes  Estimate the CO2 flux ◦ Provide a methodology for further studies ◦ Couple the CO2 transfer algorithm to a 1D turbulence model
  • 33. Turbulent CO2 transfer on the equatorial Atlantic ocean  CO2 over the oceans Atmospheric CO2 concentration at Ascension Island (8°S, 14°W) Fonseca (2011) Atmospheric CO2 concentration over the oceans Source: NOAA
  • 34. Turbulent CO2 transfer on the equatorial Atlantic ocean  CO2 transfer on the oceans
  • 35. Turbulent CO2 transfer on the equatorial Atlantic ocean  What is flux? Flux is the amount of “something” passing through a surface http://betterexplained.com/articles/flu x/ Source: http://isites.harvard.edu/icb/icb.do?keyword=k41471&pageid=icb.page194990 Source: wikipedia
  • 36. Turbulent CO2 transfer on the equatorial Atlantic ocean  Why the heat flux? The latent and sensible heat fluxes are estimated by the algorithm and can be used as initial and boundary condition to a turbulence model. Solar radiation powers the Earth system Source: http://www.answers.com/topic/planetary-boundary-layer
  • 37. Turbulent CO2 transfer on the equatorial Atlantic ocean  Why the heat flux? Values of the flux of Latent and sensible heat and the shortwave and longwave radiation are used by the algorithm to estimate the CO2 transfer Source: NASA; The Earth Observer November-December, 2006
  • 38. Turbulent CO2 transfer on the equatorial Atlantic ocean  Wind speed & momentum flux Transfer of wind momentum to the ocean drives the CO2 transfer on the equatorial Atlantic ocean.
  • 39. Turbulent CO2 transfer on the equatorial Atlantic ocean  The CO2 fluxes can be obtained from the heat and momentum fluxes  The equatorial Atlantic ocean act as a CO2 source to the atmosphere
  • 40. Turbulent CO2 transfer on the equatorial Atlantic ocean  Implications: ◦ The CO2 transfer algorithm can now be coupled to ocean/atmosphere turbulence models  It can act as an upper boundary condition, forcing the water column/atmosphere  That, in turn, can force the algorithm, resulting in physically sound estimations of the upper layers of the ocean and the atmosphere.
  • 41. Summary  Turbulent vs. Smooth flow  History and theory development  Randomicity vs. chaos  The N-S equations ◦ Describe all flow state, turbulent or otherwise ◦ Described by a non-linear partial differential equation ◦ Discretized by numerical methods
  • 42. Summary  Numerical methods ◦ Initial and boundary conditions ◦ The numerical grid  Sample applications ◦ Aircraft engineering ◦ Air pollution  Computer simulations: The nitty-gritty ◦ Dependent on the numerical model and the parameterized physical processes ◦ Dependent on the geometry
  • 43. Summary  Turbulent CO2 transfer ◦ CO2 over the oceans ◦ Flux  Heat & Momentum ◦ CO2 over the equatorial Atlantic ocean  Gas flux  Turbulent mixing ◦ Coupling of the algorithm to a turbulence model