Note: the link to the resource page should have been http://bit.ly/2QRVw0S
As big data jobs move from the proof-of-concept phase into powering real production services, you will need to consider what will happen when everything eventually goes wrong (such as recommending inappropriate products or other decisions taken on bad data).
During this talk, you will discover that you will eventually get aboard the failboat (especially with ~40% of respondents automatically deploying their Spark jobs results to production). It's important to automatically recognise when things have gone wrong, so you can stop deployment before you have to update our resumes.
Figuring out when things have gone terribly wrong is trickier than it first appears, since you want to catch the errors before your users notice them (or failing that before CNN notices them). We will explore general techniques for validation, look at responses from people validating big data jobs in production environments, and libraries that can assist you in writing relative validation rules based on historical data. For folks working in streaming, you will learn about the unique challenges of attempting to validate in a real-time system, and what you can do besides keeping an up-to-date resume on file for when things go wrong.
You will discover code examples in Apache Spark, as well as learn about similar concepts in Apache BEAM (a cross platform tool), but the techniques should be applicable across systems.
Real-world examples (with company names removed) will be presented, as well as several creative-common licensed cat pictures
Validating big data pipelines - Scala eXchange 2018
1. Validating
Big Data & ML Pipelines
With Apache Spark & Friends:
knowing when you crash
Melinda
Seckington
2. Some links (slides & etc will be at):
http://bit.ly/2E5qFsC
CatLoversShow
3. Holden:
● My name is Holden Karau
● Prefered pronouns are she/her
● Developer Advocate at Google
● Apache Spark PMC, Beam contributor
● previously IBM, Alpine, Databricks, Google, Foursquare & Amazon
● co-author of Learning Spark & High Performance Spark
● Twitter: @holdenkarau
● Slide share http://www.slideshare.net/hkarau
● Code review livestreams: https://www.twitch.tv/holdenkarau /
https://www.youtube.com/user/holdenkarau
● Spark Talk Videos http://bit.ly/holdenSparkVideos
● Talk feedback (if you are so inclined): http://bit.ly/holdenTalkFeedback
4.
5. What is going to be covered:
● What validation is & why you should do it for your data pipelines
● How to make simple validation rules & our current limitations
● ML Validation - Guessing if our black box is “correct”
● Cute & scary pictures
○ I promise at least one cat
○ And at least one picture of my scooter club
Andrew
6. Who I think you wonderful humans are?
● Nice* people
● Like silly pictures
● Possibly Familiar with one of Scala, if your new WELCOME!
● Possibly Familiar with one of Spark, BEAM, or a similar system (but also ok if
not)
● Want to make better software
○ (or models, or w/e)
● Or just want to make software good enough to not have to keep your resume
up to date
● Open to the idea that pipeline validation can be explained with a scooter club
that is definitely not a gang.
7. Test are not perfect: See Motorcycles/Scooters/...
● Are not property checking
● It’s just multiple choice
● You don’t even need one to ride a scoot!
8. So why should you validate?
● tl;dr - Your tests probably aren’t perfect
● You want to know when you're aboard the failboat
● Our code will most likely fail at some point
○ Sometimes data sources fail in new & exciting ways (see “Call me Maybe”)
○ That jerk on that other floor changed the meaning of a field :(
○ Our tests won’t catch all of the corner cases that the real world finds
● We should try and minimize the impact
○ Avoid making potentially embarrassing recommendations
○ Save having to be woken up at 3am to do a roll-back
○ Specifying a few simple invariants isn’t all that hard
○ Repeating Holden’s mistakes is still not fun
9. So why should you test & validate:
Results from: Testing with Spark survey http://bit.ly/holdenTestingSpark
10. So why should you test & validate - cont
Results from: Testing with Spark survey http://bit.ly/holdenTestingSpark
11. What happens when we don’t
This talk is being recorded so we’ll leave it at:
● Go home after an accident rather than checking on bones
Or with computers:
● Breaking a feature that cost a few million dollars
● Every search result was a coffee shop
● Rabbit (“bunny”) versus rabbit (“queue”) versus rabbit (“health”)
● VA, BoA, etc.
itsbruce
12. Cat photo from http://galato901.deviantart.com/art/Cat-on-Work-Break-173043455
13. Lets focus on validation some more:
*Can be used during integration tests to further validate integration results
14.
15. So how do we validate our jobs?
● The idea is, at some point, you made software which worked.
○ If you don’t you probably want to run it a few times and manually validate it
● Maybe you manually tested and sampled your results
● Hopefully you did a lot of other checks too
● But we can’t do that every time, our pipelines are no longer write-once
run-once they are often write-once, run forever, and debug-forever.
16. How many people have something like this?
val data = ...
val parsed = data.flatMap(x =>
try {
Some(parse(x))
} catch {
case _ => None // Whatever, it's JSON
}
}
Lilithis
17. But we need some data...
val data = ...
data.cache()
val validData = data.filter(isValid)
val badData = data.filter(! isValid(_))
if validData.count() < badData.count() {
// Ruh Roh! Special business error handling goes here
}
...
Pager photo by Vitachao CC-SA 3
18. Well that’s less fun :(
● Our optimizer can’t just magically chain everything together anymore
● My flatMap.map.map is fnur :(
● Now I’m blocking on a thing in the driver
Sn.Ho
19. Counters* to the rescue**!
● Both BEAM & Spark have their it own counters
○ Per-stage bytes r/w, shuffle r/w, record r/w. execution time, etc.
○ In UI can also register a listener from spark validator project
● We can add counters for things we care about
○ invalid records, users with no recommendations, etc.
○ Accumulators have some challenges (see SPARK-12469 for progress) but are an interesting
option
● We can _pretend_ we still have nice functional code
*Counters are your friends, but the kind of friends who steal your lunch money
** In a similar way to how regular expressions can solve problems….
Miguel Olaya
20. So what does that look like?
val parsed = data.flatMap(x => try {
Some(parse(x))
happyCounter.add(1)
} catch {
case _ =>
sadCounter.add(1)
None // What's it's JSON
}
}
// Special business data logic (aka wordcount)
// Much much later* business error logic goes here
Pager photo by Vitachao CC-SA 3
Phoebe Baker
21. Ok but what about those *s
● Beam counters are implementation dependent
● Spark counters aren’t great for data properties
● etc.
Miguel Olaya
22. + You need to understand your domain, like bubbles
23. General Rules for making Validation rules
● According to a sad survey most people check execution time & record count
● spark-validator is still in early stages but interesting proof of concept
○ I’m going to rewrite it over the holidays as a two-stage job (one to collect metrics in your main
application and a second to validate).
○ I was probably a bit sleep deprived when I wrote it because looking at it… idk
● Sometimes your rules will miss-fire and you’ll need to manually approve a job
● Remember those property tests? Could be Validation rules
● Historical data
● Domain specific solutions
Photo by:
Paul Schadler
24. Input Schema Validation
● Handling the “wrong” type of cat
● Many many different approaches
○ filter/flatMap stages
○ Working in Scala/Java? .as[T]
○ Manually specify your schema after doing inference the first time :p
● Unless your working on mnist.csv there is a good chance your validation is
going to be fuzzy (reject some records accept others)
● How do we know if we’ve rejected too much?
Bradley Gordon
25. As a relative rule:
val (ok, bad) = (sc.accumulator(0), sc.accumulator(0))
val records = input.map{ x => if (isValid(x)) ok +=1 else bad += 1
// Actual parse logic here
}
// An action (e.g. count, save, etc.)
if (bad.value > 0.1* ok.value) {
throw Exception("bad data - do not use results")
// Optional cleanup
}
// Mark as safe
P.S: If you are interested in this check out spark-validator (still early stages).
Found Animals Foundation Follow
26. Do you do property testing like the cool kids?
● Yes in theory they’re already “tested” but...
● Common function to check accumulator value between validation & tests
● The real-world is can be fuzzier
27. Counters in BEAM: (1 of 2)
private final Counter matchedWords =
Metrics.counter(FilterTextFn.class, "matchedWords");
private final Counter unmatchedWords =
Metrics.counter(FilterTextFn.class, "unmatchedWords");
// Your special business logic goes here (aka shell out to Fortan
or Cobol)
Luke Jones
28. Counters in BEAM: (2 of 2)
Long matchedWordsValue = metrics.metrics().queryMetrics(
new MetricsFilter.Builder()
.addNameFilter("matchedWords")).counters().next().committed();
Long unmatchedWordsValue = metrics.metrics().queryMetrics(
new MetricsFilter.Builder()
.addNameFilter("unmatchedWords")).counters().next().committed();
assertThat("unmatchWords less than matched words",
unmatchedWordsValue,
lessThan(matchedWordsValue));
Luke Jones
29. % of data change
● Not just invalid records, if a field’s value changes everywhere it could still be
“valid” but have a different meaning
○ Remember that example about almost recommending illegal content?
● Join and see number of rows different on each side
● Expensive operation, but if your data changes slowly / at a constant ish rate
○ Sometimes done as a separate parallel job
● Can also be used on output if applicable
○ You do have a table/file/as applicable to roll back to right?
30. Validation rules can be a separate stage(s)
● Sometimes data validation in parallel in a separate process
● Combined with counters/metrics from your job
● Can then be compared with a seperate job that looks at the results and
decides if the pipeline should continue
31. What tools exist for scooters validation?
The scala rider packtalk(R)* could be
used to keep in touch with everyone
and if they fall out of the mesh we
can go find them.
*No endorsement implied in any
manner
32. TFDV: Magic*
● Counters, schema inference, anomaly detection, oh my!
# Compute statistics over a new set of data
new_stats = tfdv.generate_statistics_from_csv(NEW_DATA)
# Compare how new data conforms to the schema
anomalies = tfdv.validate_statistics(new_stats, schema)
# Display anomalies inline
tfdv.display_anomalies(anomalies)
Details:
https://medium.com/tensorflow/introducing-tensorflow-data-
validation-data-understanding-validation-and-monitoring-at-
scale-d38e3952c2f0
33. Not just data changes: Software too
● Things change! Yay! Often for the better.
○ Especially with handling edge cases like NA fields
○ Don’t expect the results to change - side-by-side run + diff
● Have an ML model?
○ Welcome to new params - or old params with different default values.
○ We’ll talk more about that later
● Excellent PyData London talk about how this can impact
ML models
○ Done with sklearn shows vast differences in CVE results only changing
the model number
Francesco
34. Extra considerations for ML jobs:
● Harder to look at output size and say if its good
● We can look at the cross-validation performance
● Fixed test set performance
● Number of iterations / convergence rate
● Number of features selected / number of features
changed in selection
● (If applicable) delta in model weights or tree size or ...
Jennifer C.
35. Cross-validation
because saving a test set is effort
● Trains on X% of the data and tests on Y%
○ Multiple times switching the samples
● org.apache.spark.ml.tuning has the tools for auto fitting
using CB
○ If your going to use this for auto-tuning please please save a test set
○ Otherwise your models will look awesome and perform like a ford
pinto (or whatever a crappy car is here. Maybe a renault reliant?)
● Not perfect: sometimes the real world will still surprise
○ Do canary & A/B testing when possible as well
Jonathan Kotta
36. False sense of security:
● A/B test please even if CV says many many $s
● Rank based things can have training bias with previous
orders
● Non-displayed options: unlikely to be chosen
● Sometimes can find previous formulaic corrections
● Sometimes we can “experimentally” determine
● Other times we just hope it’s better than nothing
● Try and make sure your ML isn’t evil or re-encoding
human biases but stronger
37. Some ending notes
● Your validation rules don’t have to be perfect
○ But they should be good enough they alert infrequently
● You should have a way for the human operator to
override.
● Just like tests, try and make your validation rules
specific and actionable
○ # of input rows changed is not a great message - table XYZ grew
unexpectedly to Y%
● While you can use (some of) your tests as a basis for
your rules, your rules need tests too
○ e.g. add junk records/pure noise and see if it rejects
James Petts
38. Related talks & blog posts
● Testing Spark Best Practices (Spark Summit 2014)
● Every Day I’m Shuffling (Strata 2015) & slides
● Spark and Spark Streaming Unit Testing
● Making Spark Unit Testing With Spark Testing Base
● Testing strategy for Apache Spark jobs
● The BEAM programming guide
Interested in OSS (especially Spark)?
● Check out my Twitch & Youtube for livestreams - http://twitch.tv/holdenkarau
& https://www.youtube.com/user/holdenkarau
Becky Lai
39. Learning Spark
Fast Data
Processing with
Spark
(Out of Date)
Fast Data
Processing with
Spark
(2nd edition)
Advanced
Analytics with
Spark
Spark in Action
High Performance SparkLearning PySpark
40. High Performance Spark!
Available today, not a lot on testing and almost nothing on
validation, but that should not stop you from buying several
copies (if you have an expense account).
Cat’s love it!
Amazon sells it: http://bit.ly/hkHighPerfSpark :D
41. Sign up for the mailing list @
http://www.distributedcomputing4kids.com
42. And some upcoming talks:
● January
○ Data Day Texas
● February
○ Fosdem
● March
○ Strata San Francisco
● April
○ Strata London
● May
○ Code Mania
43. Sparkling Pink Panda Scooter group photo by Kenzi
k thnx bye! (or questions…)
If you want to fill out a survey:
http://bit.ly/holdenTestingSpark
Give feedback on this presentation
http://bit.ly/holdenTalkFeedback
I’m sadly heading out to
Berlin right after this but
e-mail me:
holden@pigscanfly.ca
44. Related packages
● spark-testing-base: https://github.com/holdenk/spark-testing-base
● sscheck: https://github.com/juanrh/sscheck
● spark-validator: https://github.com/holdenk/spark-validator *Proof of
concept, do not actually use*
● spark-perf - https://github.com/databricks/spark-perf
● spark-integration-tests - https://github.com/databricks/spark-integration-tests
● scalacheck - https://www.scalacheck.org/
Becky Lai
45. Traditional theory (Models)
● Human decides it's time to “update their models”
● Human goes through a model update run-book
● Human does other work while their “big-data” job runs
● Human deploys X% new models
● Looks at graphs
● Presses deploy
Andrew
46. Traditional practice (Models)
● Human is cornered by stakeholders and forced to update models
● Spends a few hours trying to remember where the guide is
● Gives up and kind of wings it
● Comes back to a trained model
● Human deploys X% models
● Human reads reddit/hacker news/etc.
● Presses deploy
Bruno Caimi
47. New possible practice (sometimes)
● Computer kicks off job (probably at an hour boundary because *shrug*) to
update model
● Workflow tool notices new model is available
● Computer deploys X% models
● Software looks at monitoring graphs, uses statistical test to see if it’s bad
● Robot rolls it back & pager goes off
● Human Presses overrides and deploys anyways
Henrique Pinto