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KICK OFF MEETING 
UR3 ACTIVITIES 
Olivier Terzo, Pietro Ruiu 
ISMB
UR3: OBJECTIVES 
• Cloud computing Infrastructure implementation 
• Share data/algorithms and HD resources 
• Improve applications/data portability in Cloud 
• Data accessibility for different teams, communities 
• Computational resources availability for analysis
GANTT: UR3 TASKS 
Deliverable 
DEMOGRAPE 
Year 1: (Start: 06/2014) Year 2 (End: 05/2016) Partners Involved 
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 
2014 2015 2016 
6 7 8 9 10 11 12 1 2 3 4 5 6 7 8 9 10 11 12 1 2 3 4 5 INGV ISMB POLITO CRAAM SANSA 
DURATION 
PERIOD 
MANAGEMENT 
USE CASES DEFINITION 
RECEIVERS INSTALLATION 
PROTOTYPE DELIVERY 
3.0 UR3 (ISMB) 
3.1 USERS, RESOURCES, STORAGE REQUIREMENTS X X X X X 
3.2 CLOUD INFRASTRUCTURE DESIGN x x x 
3.3 DATA STORAGE DESIGN x x x x x 
3.4 CLOUD INFRASTRUCTURE IMPLEMENTATION x x x 
3.5 DATA STORAGE IMPLEMENTATION x x x 
3.6 APPLICATIONS CLOUD INTEGRATION x x x 
3.7 CLOUD INFRASTRUCTURE TESTING x x x x x
DEMOGRAPE: CLOUD GENERAL CONCEPT
Cloud non Cloud 
• Automatically add Virtual Nodes, suitably sized (num. of CPU 
and RAM) depending on the workload. 
• Virtualization enables the optimization of resources and simplifies 
infrastructure management. 
• The real advantage of this model, is the flexibility of the use of the 
hardware 
IT capacities 
UNDER CAPACITIES 
OVER CAPACITIES 
NON cloud 
ON cloud 
Resources available 
Real 
needs 
Time 
ESTIMATED NEEDS 
27/10/2014 ISMB – Copyright 2013 5
CLOUD TERMINOLOGY 
Horizontal scalability: 
• dynamic allocation in upscaling and downscaling of more virtual 
machines 
• dynamic allocation of storage for data management 
Vertical scalability: 
• capability to change RAM memory and core allocation in a single 
virtual machine 
27/10/2014 ISMB – Copyright 2013 6
DEMOGRAPE: CLOUD MOTIVATIONS 
Reduce IT costs for HW 
infrastructure 
servers usage optimization 
«Pay per Use» 
«On demand resources» 
On E-Science, demand of computational 
resources and storage are increasing 
constantly 
Dynamic and flexible use of hardware capacities 
Reduce the risk of 
fragmentation, isolation from 
existing infrastructure 
Full compatibility and flexibility 
on using existing algorithms / 
applications independently of 
the SW 
Collaborative Infrastructures, 
Horizontal and vertical scalability, computational infrastructure platforms
CLOUD TECHNOLOGICAL LAYERS 
Virtualization 
Infrastructure 
Hybrid Cloud: 
Private and public 
Cloud 
Cloud services 
Open Source Plaforms
Dataset 
International Cloud Research Infrastructure 
Resources 
Sensors Upload 
Upload/Download 
WEB PLATFORM 
Sharing data 
Sharing resources 
Deploy applications 
INGV: Istituto Nazionale 
di Geofisica e 
Vulcanologia 
SANSA: 
South Africa National 
Space Agency 
CRAAM-INPE: Centro De 
Radio Astronomia E 
Astrofisica 
MACKENZIE 
Brazil 
South Africa 
Italy
DEMOGRAPE: ARCHITECTURE COMPONENTS 
Resources 
orchestration 
User & Admin 
console 
Management 
Application 
orchestration 
C 
O 
M 
P 
A 
T 
I 
B 
L 
E 
A 
P 
I 
Applications 
CLOUD MANAGEMENT 
CPU RAM Network Storage 
Virtualization 
Users (SaaS) 
Cloud 
Platform 
Resources 
Virtualization 
Resources and 
storage (IaaS) 
services 
Cloud Services 
(PaaS) 
Public 
Cloud 
Providers
DAAS: DATA AS A SERVICES 
Data as a Services (DaaS) is an emerging 
service on cloud for large users communities 
Constraints: 
1. Moving data (time transfers, network link limitations) 
2. Datasets are growing constantly 
3. Data Management 
Proposed approach: 
1. Decoupling resources sharing and data processing 
2. Federation of infrastructures 
3. Moving applications NON data
Decoupling data Location and data Processing 
• Scientifics disciplines are growing 
• Communities are growing 
• Large scale experiments 
Need new paradigms for facilitate 
co-operation , co-ordination 
• Moving from datasets/resources isolation to 
datasets/resources share services model for: 
• Data location services 
• Data sharing services 
• Processing services 
ISMB – Copyright 2013 12
DaaS 
Services 
discovery 
DAAS SERVICES: CONCEPT 
2 
2 
Finding Dataset 
Datasets catalog 
3 Dataset location 
4 Sending application 
Metadata declaration 
Dataset 
Data format 
Data delivery 
Data quality 
Data availibility 
1 
Datasets 
declaration 
… 
Cloud Infrastructure
UR 3: OPEN POINTS 
Applications: 
1. Applications integration on cloud 
2. Data acquisition from Antartica to Cloud to be analyzed 
3. Application replication over all sites 
Data storage: 
1. Data estimation grow 
2. Data sharing / replication over all sites 
(centralized/decentralized approach) 
Cloud Infrastructure: 
1. Cloud model to be applied 
2. Resources availibility 
3. Implementation timeline
ISMB CONTACTS 
Pietro Ruiu ruiu@ismb.it 
Istituto Superiore Mario Boella 
Via Pier Carlo Boggio, 61 
10138 Torino, Italy 
T. +39 011 2276903 
MP. +39 366 693 7444 
Oliver Terzo terzo@ismb.it 
Istituto Superiore Mario Boella 
Via Pier Carlo Boggio, 61 
10138 Torino, Italy 
T. +39 011 2276855 
MP. +39 331 670 6418 
QUESTIONS?

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DGterzo

  • 1. KICK OFF MEETING UR3 ACTIVITIES Olivier Terzo, Pietro Ruiu ISMB
  • 2. UR3: OBJECTIVES • Cloud computing Infrastructure implementation • Share data/algorithms and HD resources • Improve applications/data portability in Cloud • Data accessibility for different teams, communities • Computational resources availability for analysis
  • 3. GANTT: UR3 TASKS Deliverable DEMOGRAPE Year 1: (Start: 06/2014) Year 2 (End: 05/2016) Partners Involved 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 2014 2015 2016 6 7 8 9 10 11 12 1 2 3 4 5 6 7 8 9 10 11 12 1 2 3 4 5 INGV ISMB POLITO CRAAM SANSA DURATION PERIOD MANAGEMENT USE CASES DEFINITION RECEIVERS INSTALLATION PROTOTYPE DELIVERY 3.0 UR3 (ISMB) 3.1 USERS, RESOURCES, STORAGE REQUIREMENTS X X X X X 3.2 CLOUD INFRASTRUCTURE DESIGN x x x 3.3 DATA STORAGE DESIGN x x x x x 3.4 CLOUD INFRASTRUCTURE IMPLEMENTATION x x x 3.5 DATA STORAGE IMPLEMENTATION x x x 3.6 APPLICATIONS CLOUD INTEGRATION x x x 3.7 CLOUD INFRASTRUCTURE TESTING x x x x x
  • 5. Cloud non Cloud • Automatically add Virtual Nodes, suitably sized (num. of CPU and RAM) depending on the workload. • Virtualization enables the optimization of resources and simplifies infrastructure management. • The real advantage of this model, is the flexibility of the use of the hardware IT capacities UNDER CAPACITIES OVER CAPACITIES NON cloud ON cloud Resources available Real needs Time ESTIMATED NEEDS 27/10/2014 ISMB – Copyright 2013 5
  • 6. CLOUD TERMINOLOGY Horizontal scalability: • dynamic allocation in upscaling and downscaling of more virtual machines • dynamic allocation of storage for data management Vertical scalability: • capability to change RAM memory and core allocation in a single virtual machine 27/10/2014 ISMB – Copyright 2013 6
  • 7. DEMOGRAPE: CLOUD MOTIVATIONS Reduce IT costs for HW infrastructure servers usage optimization «Pay per Use» «On demand resources» On E-Science, demand of computational resources and storage are increasing constantly Dynamic and flexible use of hardware capacities Reduce the risk of fragmentation, isolation from existing infrastructure Full compatibility and flexibility on using existing algorithms / applications independently of the SW Collaborative Infrastructures, Horizontal and vertical scalability, computational infrastructure platforms
  • 8. CLOUD TECHNOLOGICAL LAYERS Virtualization Infrastructure Hybrid Cloud: Private and public Cloud Cloud services Open Source Plaforms
  • 9. Dataset International Cloud Research Infrastructure Resources Sensors Upload Upload/Download WEB PLATFORM Sharing data Sharing resources Deploy applications INGV: Istituto Nazionale di Geofisica e Vulcanologia SANSA: South Africa National Space Agency CRAAM-INPE: Centro De Radio Astronomia E Astrofisica MACKENZIE Brazil South Africa Italy
  • 10. DEMOGRAPE: ARCHITECTURE COMPONENTS Resources orchestration User & Admin console Management Application orchestration C O M P A T I B L E A P I Applications CLOUD MANAGEMENT CPU RAM Network Storage Virtualization Users (SaaS) Cloud Platform Resources Virtualization Resources and storage (IaaS) services Cloud Services (PaaS) Public Cloud Providers
  • 11. DAAS: DATA AS A SERVICES Data as a Services (DaaS) is an emerging service on cloud for large users communities Constraints: 1. Moving data (time transfers, network link limitations) 2. Datasets are growing constantly 3. Data Management Proposed approach: 1. Decoupling resources sharing and data processing 2. Federation of infrastructures 3. Moving applications NON data
  • 12. Decoupling data Location and data Processing • Scientifics disciplines are growing • Communities are growing • Large scale experiments Need new paradigms for facilitate co-operation , co-ordination • Moving from datasets/resources isolation to datasets/resources share services model for: • Data location services • Data sharing services • Processing services ISMB – Copyright 2013 12
  • 13. DaaS Services discovery DAAS SERVICES: CONCEPT 2 2 Finding Dataset Datasets catalog 3 Dataset location 4 Sending application Metadata declaration Dataset Data format Data delivery Data quality Data availibility 1 Datasets declaration … Cloud Infrastructure
  • 14. UR 3: OPEN POINTS Applications: 1. Applications integration on cloud 2. Data acquisition from Antartica to Cloud to be analyzed 3. Application replication over all sites Data storage: 1. Data estimation grow 2. Data sharing / replication over all sites (centralized/decentralized approach) Cloud Infrastructure: 1. Cloud model to be applied 2. Resources availibility 3. Implementation timeline
  • 15. ISMB CONTACTS Pietro Ruiu ruiu@ismb.it Istituto Superiore Mario Boella Via Pier Carlo Boggio, 61 10138 Torino, Italy T. +39 011 2276903 MP. +39 366 693 7444 Oliver Terzo terzo@ismb.it Istituto Superiore Mario Boella Via Pier Carlo Boggio, 61 10138 Torino, Italy T. +39 011 2276855 MP. +39 331 670 6418 QUESTIONS?