Motivating students to Open Science using examples from computational biology.

1. The Path to Open Science with Illustrations from Computational Biology Philip E. Bourne University of California San Diego [email_address] http://www.sdsc.edu/pb Relevant Work from Us: http://www.sdsc.edu/pb/SummaryScholarComm.pdf MURPHA Sept 8, 2011

5. Open Science Can Accelerate the Scientific Process… For some people the change may be too slow to save their life

6. Josh Sommer – A Remarkable Young Man Co-founder & Executive Director the Chordoma Foundation http://sagecongress.org/Presentations/Sommer.pdf

8. http://sagecongress.org/Presentations/Sommer.pdf

9. http://sagecongress.org/Presentations/Sommer.pdf

10. http://sagecongress.org/Presentations/Sommer.pdf

11. Adapted: http://sagecongress.org/Presentations/Sommer.pdf Isaac If I have seen further it is only by standing on the shoulders of giants Isaac Newton From Josh’s point of view the climb up just takes too long > 15 years and > $850M to be more precise

12. http://sagecongress.org/Presentations/Sommer.pdf

13. http://sagecongress.org/Presentations/Sommer.pdf

14. http://fora.tv/2010/04/23/Sage_Commons_Josh_Sommer_Chordoma_Foundation

15. Other Reasons for Open Science

16. We Cannot Possibly Read a Fraction of the Papers We Should Why Open Science Renear & Palmer 2009 Science 325:828-832

17. Hence We Are Scanning More Reading Less Renear & Palmer 2009 Science 325:828-832 Why Open Science

18. We Need Tools That Can Automatically Scan the Literature and Make Sense of It

19. Automatic Knowledge Discovery for Those with No Time to Read Shared Function Immunology Literature Cardiac Disease Literature

20. Open Science Does Not Just Mean the Final Publication, But the Scientific Process Itself

21. The Scientific Process Research [Grants] Journal Article Conference Paper Poster Session Reviews Blogs Community Service/Data Curation

23. We Need Better Tools to Manage the Scientific Enterprise

24. Many Great Tools Out There We Need Scientist Management Tools Taverna

26. Yes The Workflow is Real

28. The Problem at this Time is There is Little Reward for Such Activities

30. Are There Killer Apps Out There That Could be A Game Changer for Improving Science as Well as the Reward Process?

31. Data – Knowledge Integration Perhaps?

35. Interactive PDFs etc..

36. Article of the Future

37. The Embracing of Rich Media Perhaps?

38. Yes YouTube Can Increase the Rate of Discovery Unleash the full power of the Internet

39. Pubcast – Video Integrated with the Full Text of the Paper

40. Postercasts

41. The Semantic Web Perhaps?

42. Unimaginable Connections Made Automatically Through RDF Descriptions http://richard.cyganiak.de/2007/10/lod/lod-datasets_2010-09-22_colored.html

43. Living Documents

44. The Journal Has A Copy of Record that Provides a Reward

45. The App Model

48. What Are Your Ideas To Accelerate the Rate of Scientific Discovery?

50. Questions? [email_address]