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Developing a classification framework for landcover
landuse change analysis in Chile
Dipl. Geoecologist Andreas Ch. Braun – Karlsruhe Institute of Technology – KIT


Institute of Photogrammetry and Remote Sensing - IPF




KIT – University of the State of Baden-Wuerttemberg and
National Research Center of the Helmholtz Association                      www.kit.edu
My background

      Andreas Ch. Braun – Diploma Geoecologist

      Works at the Institute of Photogrammetry and Remote Sensing
                Kernel-based (Vegetation) Classification
                    Support Vector Machines
                    Import Vector Machines
                    Relevance Vector Machines
                Feature Extraction Methods & Data Mining


      Received a special Ph. D. scholarship in 2010 from the german
      „Initiative for Excellence“

      For a case study on Deforestation and Forest Degradation in Chile



2    22.07.11        Dipl. Geoecologist Andreas Ch. Braun   Institute of Photogrammetry and Remote Sensing
The project on Deforestation in Chile

      Analyse impact of substitution of native forests with plantations (Pinus,
      Eucalyptus, Populus)
                Landscape fragmentation
                Habitat loss
                Biodiversity loss
      Approach:
      Biodiversity data (point data) in the field, interpolate via remote
      sensing/geoinformation on entire area (areal data)




3    22.07.11       Dipl. Geoecologist Andreas Ch. Braun   Institute of Photogrammetry and Remote Sensing
How can we get from here....




                                  Overall Accuracy 61,3%

4    22.07.11   Dipl. Geoecologist Andreas Ch. Braun       Institute of Photogrammetry and Remote Sensing
.... to here?




                                  Overall Accuracy 80,8% (+19,5)

5    22.07.11   Dipl. Geoecologist Andreas Ch. Braun       Institute of Photogrammetry and Remote Sensing
Review: Image Morphology




        Im. Matrix B                              Structuring Element S                     Im.Matrix B
     Erosion:         B⊖S :={z | Sz ⊆ B}                  →      All Pixels in S must be in foreground
     Dilatation:      B⊕S :={z | Sz ∩ B ≠ ∅} →                   Min. 1 Pixel in S must be in foreground
     Opening:         Erosion dann Dilatation
     Closing:         Dilatation dann Erosion




     Original                  Erosion                    Dilatation        Opening                       Closing
6    22.07.11      Dipl. Geoecologist Andreas Ch. Braun                        Institute of Photogrammetry and Remote Sensing
How can mathematical morphology help?




         Pinus radiata plantation




                                                        Populus nigra plantation
Nothofagus spec.
forest




 7    22.07.11   Dipl. Geoecologist Andreas Ch. Braun      Institute of Photogrammetry and Remote Sensing
How can mathematical morphology help?

      Toy-Example: Classification of plantations, forests, open soils




8    22.07.11   Dipl. Geoecologist Andreas Ch. Braun    Institute of Photogrammetry and Remote Sensing
How can mathematical morphology help?

      Toy-Example: Classification of plantations, forests, open soils




9    22.07.11   Dipl. Geoecologist Andreas Ch. Braun    Institute of Photogrammetry and Remote Sensing
How can mathematical morphology help?

       Toy-Example: Classification of plantations, forests, open soils




         Original                                          Opening               Closing




10    22.07.11      Dipl. Geoecologist Andreas Ch. Braun             Institute of Photogrammetry and Remote Sensing
How can mathematical morphology help?




       By using math. morphology, pixels are getting „more intelligent“. They
                 „know“ something about their neighbour pixels.

     Math. Morphology is one possibility of integrating the spatial context into a
                             spectral classification.

     „Mathematical morphology is a theory aiming to analyse the spatial
         relationships between pixels“ (Fauvel et al., 2008, p.3805)




11    22.07.11   Dipl. Geoecologist Andreas Ch. Braun     Institute of Photogrammetry and Remote Sensing
Morphological Attribute Profiles
      M. Dalla Mura, J. A. Benediktsson, B. Waske, L. Bruzzone (2010): „Morphological
      Attribute Profiles for the Analysis of Very High Resolution Images“. - IEEE
      Transactions on Geoscience and Remote Sensing, Vol. 48(10).

      Enhancements to the research on morphology in image classification by
      J.A.Benediktsson.

      Multilevel image analysis through opening, closing following these criteria:
             Area
             Moment of inertia
             Std. Deviation
             Diag. Of Bounding Box



      Not only one filter size but a vast range of different structuring elements.
      Graph-based approach increases computational performance.



12    22.07.11      Dipl. Geoecologist Andreas Ch. Braun             Institute of Photogrammetry and Remote Sensing
Graph-based approach

       Math. Morphology so far on binary images. How can grayscale images
       be used?
       Grayscale image is a stack of binary thresholds (e.g.. 8bit, [0,...,255])




     Intensity IKA                IKA > 80                  IKA > 120   IKA > 200                   IKA > 240

       Within this stack, a 256 level graph of connected components exits.




13    22.07.11       Dipl. Geoecologist Andreas Ch. Braun                  Institute of Photogrammetry and Remote Sensing
Morphological profile

       For these connected components (CC), certain criteria are checked
                 Area:        Is the area of a CC < the area of the structuring element ?
                 Inertia:     Is the extendedness of a CC < structuring element ?
                 Std. σ:      ...
                 Diag. BB:    ...


       If criteria are met, one image opening and one image closing is
       performed.

       Not only one structuring element is used, but an entire range →
       morphological profile.




14    22.07.11       Dipl. Geoecologist Andreas Ch. Braun             Institute of Photogrammetry and Remote Sensing
Morphological profile
      Afterwards, for classification we have:
                 One original image Im
                 Openings Opn, n=1,...,i,                  for different structuring elements
                 Closings Cln, n=1,...,i,                  for different structuring elements
      The morphological profile (MP) (Pesaresi, Benediktsson, 2000) is then:
                 MP={Cln, ...Im,...Opn}

     Cl3                  Cl2                     Cl1               Im             Op1              Op2                    Op3




      Instead of using only one channel and one MP, we can compute this on many
      channels, resulting in many Mps: extended morphological profile (EMP)
      (Benediktsson et al., 2005, Fauvel et al., 2008)
                 EMP={MPk1, MPk2, … , MPkm}



15    22.07.11           Dipl. Geoecologist Andreas Ch. Braun                             Institute of Photogrammetry and Remote Sensing
Additional features for classification

       For each channel of Landsat ETM+, we compute the features
                 Area:        2 per λ (Opening, Closing)
                 Inertia:     2 per λ
                 Std.:        2 per λ
                 Diag.BB:     2 per λ


       For 8 different λ

       8(features) * 8(channels) * 8(lambdas) = 512 new features for
       classification




16    22.07.11       Dipl. Geoecologist Andreas Ch. Braun   Institute of Photogrammetry and Remote Sensing
Classification of Landsat ETM+ image
                                                        3 Subsets

                                                        1: Forested area

                                                        2: Urban area

                                                        3: Agricultural area




17    22.07.11   Dipl. Geoecologist Andreas Ch. Braun    Institute of Photogrammetry and Remote Sensing
Subset 1: Forested area




                                   Overall Accuracy 61,3%

18    22.07.11   Dipl. Geoecologist Andreas Ch. Braun       Institute of Photogrammetry and Remote Sensing
Subset 1: Forested area




                                   Overall Accuracy 80,8% (+19,5)

19    22.07.11   Dipl. Geoecologist Andreas Ch. Braun       Institute of Photogrammetry and Remote Sensing
Subset 2: Urban area




                                   Overall Accuracy 75,5%

20    22.07.11   Dipl. Geoecologist Andreas Ch. Braun       Institute of Photogrammetry and Remote Sensing
Subset 2: Urban area




                                   Overall Accuracy 92,2% (+16,7)

21    22.07.11   Dipl. Geoecologist Andreas Ch. Braun       Institute of Photogrammetry and Remote Sensing
Subset 3: Agricultural area




                                   Overall Accuracy 62,2%

22    22.07.11   Dipl. Geoecologist Andreas Ch. Braun       Institute of Photogrammetry and Remote Sensing
Subset 3: Agricultural area




                                   Overall Accuracy 89,2% (+27,7)

23    22.07.11   Dipl. Geoecologist Andreas Ch. Braun       Institute of Photogrammetry and Remote Sensing
Conclusions

       Morphological Attribute Profiles are a very good, though implicit,
       method of integrating spatial context into spectrally motivated
       classification.

       Especially recommendable for classification of textured classed.

       Accuracy on three subsets in a image of Chile could be raised
       significantly.




24    22.07.11   Dipl. Geoecologist Andreas Ch. Braun    Institute of Photogrammetry and Remote Sensing
Challenges

       High dimensional feature space (>>500 features) can not be processed
       with standard methods (maximum likelihood).

       Specialized methods needed: kernel based:
                 Support vector machines
                 Import vector machines
                 Relevance vector machines


       Considerable programming effort.

       Computational expense requires high-perfomance PC (8-core
       processor with >120 GB Ram in our case)




25    22.07.11       Dipl. Geoecologist Andreas Ch. Braun   Institute of Photogrammetry and Remote Sensing
References
      M. Dalla Mura, J. A. Benediktsson, B. Waske, L. Bruzzone (2010): „Morphological Attribute
      Profiles for the Analysis of Very High Resolution Images“. - IEEE Transactions on Geoscience
      and Remote Sensing, Vol. 48(10).
      M. Fauvel, J.A. Benediktsson, J. Chanussot, J.R. Sveinsson (2008): „Spectral and Spatial
      Classification of Hyperspectral Data Using SVMs and Morphological Profiles“. - IEEE
      Transactions on Geoscience and Remote Sensing, Vol. 46(10).
      J.A. Benediktsson, J.A. Palmason, J.R. Sveinsson (2005): „Classification of Hyperspectral Data
      From Urban Areas Based on Extended Morphological Profiles“. - IEEE Transactions on
      Geoscience and Remote Sensing, Vol. 46(10).
      P. Soille, M. Pesaresi (2002): „Advances in mathematical morphology applied to geoscience and
      remote sensing“. - IEEE Transactions on Geoscience and Remote Sensing, Vol. 40(9).
      M. Pesaresi, J.A. Benediktsson (2000): „Image Segmentation based on the derivate of the
      morphological profile“.- In: Mathematical Morphology and Its Application to Image and Signal
      Processing, J. Goustsias, L. Vincent, D.S. Bloomberg, Eds. Norwell, MA: Kluwer, 2000.




26    22.07.11    Dipl. Geoecologist Andreas Ch. Braun                Institute of Photogrammetry and Remote Sensing

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Developing a classification framework for landcover landuse change analysis in Chile

  • 1. Developing a classification framework for landcover landuse change analysis in Chile Dipl. Geoecologist Andreas Ch. Braun – Karlsruhe Institute of Technology – KIT Institute of Photogrammetry and Remote Sensing - IPF KIT – University of the State of Baden-Wuerttemberg and National Research Center of the Helmholtz Association www.kit.edu
  • 2. My background Andreas Ch. Braun – Diploma Geoecologist Works at the Institute of Photogrammetry and Remote Sensing Kernel-based (Vegetation) Classification Support Vector Machines Import Vector Machines Relevance Vector Machines Feature Extraction Methods & Data Mining Received a special Ph. D. scholarship in 2010 from the german „Initiative for Excellence“ For a case study on Deforestation and Forest Degradation in Chile 2 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 3. The project on Deforestation in Chile Analyse impact of substitution of native forests with plantations (Pinus, Eucalyptus, Populus) Landscape fragmentation Habitat loss Biodiversity loss Approach: Biodiversity data (point data) in the field, interpolate via remote sensing/geoinformation on entire area (areal data) 3 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 4. How can we get from here.... Overall Accuracy 61,3% 4 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 5. .... to here? Overall Accuracy 80,8% (+19,5) 5 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 6. Review: Image Morphology Im. Matrix B Structuring Element S Im.Matrix B Erosion: B⊖S :={z | Sz ⊆ B} → All Pixels in S must be in foreground Dilatation: B⊕S :={z | Sz ∩ B ≠ ∅} → Min. 1 Pixel in S must be in foreground Opening: Erosion dann Dilatation Closing: Dilatation dann Erosion Original Erosion Dilatation Opening Closing 6 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 7. How can mathematical morphology help? Pinus radiata plantation Populus nigra plantation Nothofagus spec. forest 7 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 8. How can mathematical morphology help? Toy-Example: Classification of plantations, forests, open soils 8 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 9. How can mathematical morphology help? Toy-Example: Classification of plantations, forests, open soils 9 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 10. How can mathematical morphology help? Toy-Example: Classification of plantations, forests, open soils Original Opening Closing 10 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 11. How can mathematical morphology help? By using math. morphology, pixels are getting „more intelligent“. They „know“ something about their neighbour pixels. Math. Morphology is one possibility of integrating the spatial context into a spectral classification. „Mathematical morphology is a theory aiming to analyse the spatial relationships between pixels“ (Fauvel et al., 2008, p.3805) 11 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 12. Morphological Attribute Profiles M. Dalla Mura, J. A. Benediktsson, B. Waske, L. Bruzzone (2010): „Morphological Attribute Profiles for the Analysis of Very High Resolution Images“. - IEEE Transactions on Geoscience and Remote Sensing, Vol. 48(10). Enhancements to the research on morphology in image classification by J.A.Benediktsson. Multilevel image analysis through opening, closing following these criteria: Area Moment of inertia Std. Deviation Diag. Of Bounding Box Not only one filter size but a vast range of different structuring elements. Graph-based approach increases computational performance. 12 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 13. Graph-based approach Math. Morphology so far on binary images. How can grayscale images be used? Grayscale image is a stack of binary thresholds (e.g.. 8bit, [0,...,255]) Intensity IKA IKA > 80 IKA > 120 IKA > 200 IKA > 240 Within this stack, a 256 level graph of connected components exits. 13 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 14. Morphological profile For these connected components (CC), certain criteria are checked Area: Is the area of a CC < the area of the structuring element ? Inertia: Is the extendedness of a CC < structuring element ? Std. σ: ... Diag. BB: ... If criteria are met, one image opening and one image closing is performed. Not only one structuring element is used, but an entire range → morphological profile. 14 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 15. Morphological profile Afterwards, for classification we have: One original image Im Openings Opn, n=1,...,i, for different structuring elements Closings Cln, n=1,...,i, for different structuring elements The morphological profile (MP) (Pesaresi, Benediktsson, 2000) is then: MP={Cln, ...Im,...Opn} Cl3 Cl2 Cl1 Im Op1 Op2 Op3 Instead of using only one channel and one MP, we can compute this on many channels, resulting in many Mps: extended morphological profile (EMP) (Benediktsson et al., 2005, Fauvel et al., 2008) EMP={MPk1, MPk2, … , MPkm} 15 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 16. Additional features for classification For each channel of Landsat ETM+, we compute the features Area: 2 per λ (Opening, Closing) Inertia: 2 per λ Std.: 2 per λ Diag.BB: 2 per λ For 8 different λ 8(features) * 8(channels) * 8(lambdas) = 512 new features for classification 16 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 17. Classification of Landsat ETM+ image 3 Subsets 1: Forested area 2: Urban area 3: Agricultural area 17 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 18. Subset 1: Forested area Overall Accuracy 61,3% 18 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 19. Subset 1: Forested area Overall Accuracy 80,8% (+19,5) 19 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 20. Subset 2: Urban area Overall Accuracy 75,5% 20 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 21. Subset 2: Urban area Overall Accuracy 92,2% (+16,7) 21 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 22. Subset 3: Agricultural area Overall Accuracy 62,2% 22 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 23. Subset 3: Agricultural area Overall Accuracy 89,2% (+27,7) 23 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 24. Conclusions Morphological Attribute Profiles are a very good, though implicit, method of integrating spatial context into spectrally motivated classification. Especially recommendable for classification of textured classed. Accuracy on three subsets in a image of Chile could be raised significantly. 24 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 25. Challenges High dimensional feature space (>>500 features) can not be processed with standard methods (maximum likelihood). Specialized methods needed: kernel based: Support vector machines Import vector machines Relevance vector machines Considerable programming effort. Computational expense requires high-perfomance PC (8-core processor with >120 GB Ram in our case) 25 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing
  • 26. References M. Dalla Mura, J. A. Benediktsson, B. Waske, L. Bruzzone (2010): „Morphological Attribute Profiles for the Analysis of Very High Resolution Images“. - IEEE Transactions on Geoscience and Remote Sensing, Vol. 48(10). M. Fauvel, J.A. Benediktsson, J. Chanussot, J.R. Sveinsson (2008): „Spectral and Spatial Classification of Hyperspectral Data Using SVMs and Morphological Profiles“. - IEEE Transactions on Geoscience and Remote Sensing, Vol. 46(10). J.A. Benediktsson, J.A. Palmason, J.R. Sveinsson (2005): „Classification of Hyperspectral Data From Urban Areas Based on Extended Morphological Profiles“. - IEEE Transactions on Geoscience and Remote Sensing, Vol. 46(10). P. Soille, M. Pesaresi (2002): „Advances in mathematical morphology applied to geoscience and remote sensing“. - IEEE Transactions on Geoscience and Remote Sensing, Vol. 40(9). M. Pesaresi, J.A. Benediktsson (2000): „Image Segmentation based on the derivate of the morphological profile“.- In: Mathematical Morphology and Its Application to Image and Signal Processing, J. Goustsias, L. Vincent, D.S. Bloomberg, Eds. Norwell, MA: Kluwer, 2000. 26 22.07.11 Dipl. Geoecologist Andreas Ch. Braun Institute of Photogrammetry and Remote Sensing